RNA–Protein interactions for RNA: YLR399C

BDF1, Transcript of Protein involved in transcription initiation, yeastyeast

Gene BDF1, Length 2,061 nt, Biotype protein coding, Subcellular localisation Mitochondria .

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
BDF1YLR399C YER135CP40082 130 aa9.3□□□□□ -0.92
BDF1YLR399C YBR121C-AP0C5L4 52 aa9.29□□□□□ -0.92
BDF1YLR399C YNL146C-AQ3E7Z1 64 aa9.27□□□□□ -0.93
BDF1YLR399C YRA2P36036 203 aaKnown RBP RIP-Chip data9.25□□□□□ -0.93not detected
BDF1YLR399C IRC21Q04772 201 aa9.25□□□□□ -0.93
BDF1YLR399C YJR107C-AP0CT86 78 aa9.24□□□□□ -0.93
BDF1YLR399C YLR281CQ05863 155 aa9.24□□□□□ -0.93
BDF1YLR399C RPS28BP0C0X0 67 aaKnown RBP9.24□□□□□ -0.93
BDF1YLR399C YFR035CP43608 114 aa9.24□□□□□ -0.93
BDF1YLR399C YMR295CQ03559 197 aa9.24□□□□□ -0.93
BDF1YLR399C RPS28AQ3E7X9 67 aaPredicted RBP9.24□□□□□ -0.93
BDF1YLR399C ERG28P40030 148 aa9.23□□□□□ -0.93
BDF1YLR399C EDC1P53080 175 aaPredicted RBP9.23□□□□□ -0.93
BDF1YLR399C RPL11AP0C0W9 174 aaKnown RBP9.22□□□□□ -0.93
BDF1YLR399C YLR156WP0CE96 114 aa9.22□□□□□ -0.93
BDF1YLR399C YLR159WP0CE97 114 aa9.22□□□□□ -0.93
BDF1YLR399C YLR161WP0CE98 114 aa9.22□□□□□ -0.93
BDF1YLR399C SUT1P53032 299 aaKnown RBP9.22□□□□□ -0.93
BDF1YLR399C TRA1P38811 3744 aa9.22□□□□□ -0.93
BDF1YLR399C YLR236CA0A023PZG4 107 aa9.21□□□□□ -0.93
BDF1YLR399C MIG3P39943 394 aa9.21□□□□□ -0.93
BDF1YLR399C ALG13P53178 202 aa9.2□□□□□ -0.94
BDF1YLR399C RPL11BQ3E757 174 aaPredicted RBP9.2□□□□□ -0.94
BDF1YLR399C YDR246W-AQ3E763 66 aa9.2□□□□□ -0.94
BDF1YLR399C YMR175W-AQ3E766 64 aa9.2□□□□□ -0.94
BDF1YLR399C COX14P39103 70 aa9.19□□□□□ -0.94
BDF1YLR399C RPR2P40571 144 aa9.19□□□□□ -0.94
BDF1YLR399C YOR020W-AQ3E824 90 aa9.19□□□□□ -0.94
BDF1YLR399C BET1P22804 142 aa9.18□□□□□ -0.94
BDF1YLR399C HAL1Q01766 294 aa9.17□□□□□ -0.94
BDF1YLR399C TOS8P53147 276 aa9.17□□□□□ -0.94
BDF1YLR399C YBR219CP38317 127 aa9.16□□□□□ -0.94
BDF1YLR399C YLL006W-AQ3E814 58 aa9.16□□□□□ -0.94
BDF1YLR399C YMR244WQ04018 355 aa9.16□□□□□ -0.94
BDF1YLR399C KTI11Q3E840 82 aa9.16□□□□□ -0.94
BDF1YLR399C MPC3P53311 146 aa9.15□□□□□ -0.94
BDF1YLR399C COX17Q12287 69 aa9.14□□□□□ -0.95
BDF1YLR399C PMP3P87284 55 aa9.14□□□□□ -0.95
BDF1YLR399C KSH1Q8TGJ3 72 aa9.14□□□□□ -0.95
BDF1YLR399C AIM4P38305 123 aaPredicted RBP9.12□□□□□ -0.95
BDF1YLR399C VAM10Q08474 114 aa9.12□□□□□ -0.95
BDF1YLR399C ATP20Q12233 115 aa9.12□□□□□ -0.95
BDF1YLR399C MRPS8Q03799 155 aa9.12□□□□□ -0.95
BDF1YLR399C ATP18P81450 59 aa9.1□□□□□ -0.95
BDF1YLR399C RPL38P49167 78 aaKnown RBP9.09□□□□□ -0.95
BDF1YLR399C URA2P07259 2214 aaKnown RBP9.09□□□□□ -0.95
BDF1YLR399C SPS100P13130 326 aa9.09□□□□□ -0.95
BDF1YLR399C UBC4P15731 148 aa9.08□□□□□ -0.96
BDF1YLR399C GAT4P40569 121 aa9.08□□□□□ -0.96
BDF1YLR399C ERI1P62651 68 aaKnown RBP9.06□□□□□ -0.96
BDF1YLR399C SRL1Q08673 210 aa9.06□□□□□ -0.96
BDF1YLR399C YPR117WQ06116 2489 aa9.06□□□□□ -0.96
BDF1YLR399C YFL019CP43576 117 aa9.04□□□□□ -0.96
BDF1YLR399C TMC1Q08422 150 aaPredicted RBP9.04□□□□□ -0.96
BDF1YLR399C YAR029WP39549 74 aa9.04□□□□□ -0.96
BDF1YLR399C YIR020CP40575 100 aa9.03□□□□□ -0.96
BDF1YLR399C YLR412C-AQ3E742 68 aa9.03□□□□□ -0.96
BDF1YLR399C YFR009W-AP0C5M9 85 aa9.03□□□□□ -0.96
BDF1YLR399C YGL260WP53056 76 aa9.03□□□□□ -0.96
BDF1YLR399C TDA8Q6B2U8 126 aa9.03□□□□□ -0.96
BDF1YLR399C RPS11AP0CX47 156 aaKnown RBP9.02□□□□□ -0.97
BDF1YLR399C RPS11BP0CX48 156 aaKnown RBP9.02□□□□□ -0.97
BDF1YLR399C YMR320WQ04897 101 aa9.02□□□□□ -0.97
BDF1YLR399C HOR7Q05827 59 aa9.02□□□□□ -0.97
BDF1YLR399C TAR1Q8TGM6 124 aa9.02□□□□□ -0.97
BDF1YLR399C SPG4Q04438 115 aa9.01□□□□□ -0.97
BDF1YLR399C RSM18P40033 138 aa9.01□□□□□ -0.97
BDF1YLR399C YKL183C-AQ3E765 70 aa9.01□□□□□ -0.97
BDF1YLR399C ICY1Q04329 127 aa9□□□□□ -0.97
BDF1YLR399C NOP10Q6Q547 58 aaPredicted RBP9□□□□□ -0.97
BDF1YLR399C RSM19P53733 91 aaPredicted RBP9□□□□□ -0.97
BDF1YLR399C YGR164WP53291 111 aa8.98□□□□□ -0.97
BDF1YLR399C TDA2P40045 126 aa8.97□□□□□ -0.97
BDF1YLR399C YPS5P53057 165 aa8.96□□□□□ -0.98
BDF1YLR399C YAL065CO13511 128 aa8.95□□□□□ -0.98
BDF1YLR399C RTG1P32607 177 aa8.95□□□□□ -0.98
BDF1YLR399C YOR314WQ12506 109 aa8.95□□□□□ -0.98
BDF1YLR399C TIM10P87108 93 aa8.94□□□□□ -0.98
BDF1YLR399C TSC3Q3E790 80 aa8.94□□□□□ -0.98
BDF1YLR399C YOR268CQ08734 132 aa8.93□□□□□ -0.98
BDF1YLR399C RRT15Q3E811 62 aa8.92□□□□□ -0.98
BDF1YLR399C SFT1P43682 97 aa8.91□□□□□ -0.98
BDF1YLR399C YMR122W-AQ3E842 84 aa8.91□□□□□ -0.98
BDF1YLR399C CRC1Q12289 327 aa8.9□□□□□ -0.98
BDF1YLR399C RPL26AP05743 127 aaKnown RBP8.89□□□□□ -0.99
BDF1YLR399C RPL26BP53221 127 aaKnown RBP8.89□□□□□ -0.99
BDF1YLR399C SMD1Q02260 146 aaPredicted RBP8.88□□□□□ -0.99
BDF1YLR399C RPL29P05747 59 aaPredicted RBP8.87□□□□□ -0.99
BDF1YLR399C ICS3P47034 131 aa8.86□□□□□ -0.99
BDF1YLR399C YOL166W-AQ8TGJ1 51 aa8.86□□□□□ -0.99
BDF1YLR399C MVB12P42939 101 aa8.85□□□□□ -0.99
BDF1YLR399C RPL36BO14455 100 aaKnown RBP8.85□□□□□ -0.99
BDF1YLR399C RPL36AP05745 100 aaPredicted RBP8.85□□□□□ -0.99
BDF1YLR399C YOL014WQ08110 124 aa8.85□□□□□ -0.99
BDF1YLR399C MLF3P32047 452 aa8.83□□□□□ -1
BDF1YLR399C YLR162WQ06235 118 aa8.83□□□□□ -1
BDF1YLR399C YDR182W-AQ3E796 67 aa8.83□□□□□ -1
BDF1YLR399C YHL005CP38752 130 aa8.82□□□□□ -1
BDF1YLR399C YNL162W-AQ3E7A8 72 aa8.82□□□□□ -1
BDF1YLR399C YNL277W-AQ3E7Z0 62 aa8.82□□□□□ -1
Retrieved 100 of 5,963 RNA–protein pairs in 30.2 ms