RNA–Protein interactions for RNA: YKR036C

CAF4, Transcript of WD40 repeat-containing protein associated with the CCR4-NOT complex, yeastyeast

Gene CAF4, Length 1,932 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CAF4YKR036C YKL183C-AQ3E765 70 aa3.74□□□□□ -1.81
CAF4YKR036C YBR209WP38311 105 aa3.73□□□□□ -1.81
CAF4YKR036C HUR1P45820 110 aa3.73□□□□□ -1.81
CAF4YKR036C RPL11BQ3E757 174 aaPredicted RBP3.73□□□□□ -1.81
CAF4YKR036C YNL277W-AQ3E7Z0 62 aa3.73□□□□□ -1.81
CAF4YKR036C RPL11AP0C0W9 174 aaKnown RBP3.72□□□□□ -1.81
CAF4YKR036C PEX17P40155 199 aa3.72□□□□□ -1.81
CAF4YKR036C YJR146WP47174 117 aa3.72□□□□□ -1.81
CAF4YKR036C YML122CQ03207 126 aa3.72□□□□□ -1.81
CAF4YKR036C GAT3Q07928 141 aa3.72□□□□□ -1.81
CAF4YKR036C TDA8Q6B2U8 126 aa3.72□□□□□ -1.81
CAF4YKR036C RRT1P38192 103 aa3.72□□□□□ -1.81
CAF4YKR036C SHU1P38751 150 aa3.72□□□□□ -1.81
CAF4YKR036C YHR022CP38763 256 aa3.72□□□□□ -1.81
CAF4YKR036C KRE9P39005 276 aa3.72□□□□□ -1.81
CAF4YKR036C YER084WP40057 128 aa3.72□□□□□ -1.81
CAF4YKR036C PIR5P46999 287 aa3.72□□□□□ -1.81
CAF4YKR036C PPT2Q12036 173 aa3.72□□□□□ -1.81
CAF4YKR036C MIG3P39943 394 aa3.71□□□□□ -1.82
CAF4YKR036C YFL019CP43576 117 aa3.71□□□□□ -1.82
CAF4YKR036C YOL160WQ08321 113 aa3.71□□□□□ -1.82
CAF4YKR036C YDL009CQ12210 107 aa3.71□□□□□ -1.82
CAF4YKR036C YMR105W-AQ8TGS8 64 aa3.71□□□□□ -1.82
CAF4YKR036C SIP18P50263 79 aa3.7□□□□□ -1.82
CAF4YKR036C RSM19P53733 91 aaPredicted RBP3.7□□□□□ -1.82
CAF4YKR036C YLR285C-AQ3E771 56 aa3.7□□□□□ -1.82
CAF4YKR036C BPH1P25356 2167 aa3.7□□□□□ -1.82
CAF4YKR036C AIM4P38305 123 aaPredicted RBP3.7□□□□□ -1.82
CAF4YKR036C SUT1P53032 299 aaKnown RBP3.7□□□□□ -1.82
CAF4YKR036C YAR029WP39549 74 aa3.69□□□□□ -1.82
CAF4YKR036C YNL046WP53956 172 aa3.69□□□□□ -1.82
CAF4YKR036C YLR156WP0CE96 114 aa3.68□□□□□ -1.82
CAF4YKR036C YLR159WP0CE97 114 aa3.68□□□□□ -1.82
CAF4YKR036C YLR161WP0CE98 114 aa3.68□□□□□ -1.82
CAF4YKR036C RNH203Q12338 110 aa3.68□□□□□ -1.82
CAF4YKR036C RPL15AP05748 204 aaKnown RBP3.68□□□□□ -1.82
CAF4YKR036C RPL16AP26784 199 aaKnown RBP3.68□□□□□ -1.82
CAF4YKR036C ARC15P40518 154 aaRIP-Chip data3.68□□□□□ -1.82not detected
CAF4YKR036C YIR020CP40575 100 aa3.68□□□□□ -1.82
CAF4YKR036C IRC21Q04772 201 aa3.68□□□□□ -1.82
CAF4YKR036C RRT15Q3E811 62 aa3.68□□□□□ -1.82
CAF4YKR036C ERI1P62651 68 aaKnown RBP3.67□□□□□ -1.82
CAF4YKR036C SED1Q01589 338 aa3.67□□□□□ -1.82
CAF4YKR036C PBP4Q07362 185 aaKnown RBP3.67□□□□□ -1.82
CAF4YKR036C QCR8P08525 94 aa3.66□□□□□ -1.82
CAF4YKR036C RPB9P27999 122 aa3.66□□□□□ -1.82
CAF4YKR036C EDC1P53080 175 aaPredicted RBP3.66□□□□□ -1.82
CAF4YKR036C YGR025WP53216 100 aa3.66□□□□□ -1.82
CAF4YKR036C RGM1Q00453 211 aa3.66□□□□□ -1.82
CAF4YKR036C ATP20Q12233 115 aa3.66□□□□□ -1.82
CAF4YKR036C YBR200W-AQ3E755 54 aa3.66□□□□□ -1.82
CAF4YKR036C URA2P07259 2214 aaKnown RBP3.66□□□□□ -1.82
CAF4YKR036C YNL234WP53857 426 aa3.66□□□□□ -1.82
CAF4YKR036C YOR034C-AQ3E735 80 aa3.66□□□□□ -1.82
CAF4YKR036C MIC10Q96VH5 97 aa3.66□□□□□ -1.82
CAF4YKR036C YER145C-AA0A023PYF4 145 aa3.65□□□□□ -1.83
CAF4YKR036C GAT4P40569 121 aa3.65□□□□□ -1.83
CAF4YKR036C ICY1Q04329 127 aa3.65□□□□□ -1.83
CAF4YKR036C SPG4Q04438 115 aa3.65□□□□□ -1.83
CAF4YKR036C SRL1Q08673 210 aa3.65□□□□□ -1.83
CAF4YKR036C YLR236CA0A023PZG4 107 aa3.64□□□□□ -1.83
CAF4YKR036C YJR107C-AP0CT86 78 aa3.64□□□□□ -1.83
CAF4YKR036C RPS23AP0CX29 145 aaKnown RBP3.64□□□□□ -1.83
CAF4YKR036C RPS23BP0CX30 145 aa3.64□□□□□ -1.83
CAF4YKR036C MRPL38P35996 138 aaPredicted RBP3.64□□□□□ -1.83
CAF4YKR036C YOR268CQ08734 132 aa3.64□□□□□ -1.83
CAF4YKR036C YOL085CQ99345 113 aa3.64□□□□□ -1.83
CAF4YKR036C YAL065CO13511 128 aa3.64□□□□□ -1.83
CAF4YKR036C RPL39P04650 51 aa3.64□□□□□ -1.83
CAF4YKR036C MMS2P53152 137 aa3.64□□□□□ -1.83
CAF4YKR036C YLR162WQ06235 118 aa3.63□□□□□ -1.83
CAF4YKR036C YEL008WP40001 126 aa3.62□□□□□ -1.83
CAF4YKR036C ICS3P47034 131 aa3.62□□□□□ -1.83
CAF4YKR036C NOP10Q6Q547 58 aaPredicted RBP3.62□□□□□ -1.83
CAF4YKR036C SPT4P32914 102 aaPredicted RBP3.61□□□□□ -1.83
CAF4YKR036C PEX22P39718 180 aa3.61□□□□□ -1.83
CAF4YKR036C KEG1P43614 200 aa3.61□□□□□ -1.83
CAF4YKR036C YOR020W-AQ3E824 90 aa3.61□□□□□ -1.83
CAF4YKR036C YGL088WP53151 121 aa3.6□□□□□ -1.83
CAF4YKR036C YDR182W-AQ3E796 67 aa3.6□□□□□ -1.83
CAF4YKR036C YGR121W-AQ3E816 71 aa3.6□□□□□ -1.83
CAF4YKR036C HHF1P02309 103 aaKnown RBP3.6□□□□□ -1.83
CAF4YKR036C POR2P40478 281 aa3.6□□□□□ -1.83
CAF4YKR036C ATP18P81450 59 aa3.6□□□□□ -1.83
CAF4YKR036C CCW12Q12127 133 aa3.6□□□□□ -1.83
CAF4YKR036C YOR314WQ12506 109 aa3.6□□□□□ -1.83
CAF4YKR036C YCL048W-AQ2V2Q2 79 aa3.6□□□□□ -1.83
CAF4YKR036C YOL166W-AQ8TGJ1 51 aa3.6□□□□□ -1.83
CAF4YKR036C WWM1P43582 211 aaKnown RBP3.59□□□□□ -1.83
CAF4YKR036C YDR274CP87283 123 aa3.59□□□□□ -1.83
CAF4YKR036C DYN1P36022 4092 aa3.59□□□□□ -1.84
CAF4YKR036C RPL36BO14455 100 aaKnown RBP3.58□□□□□ -1.84
CAF4YKR036C RPL36AP05745 100 aaPredicted RBP3.58□□□□□ -1.84
CAF4YKR036C RSM18P40033 138 aa3.58□□□□□ -1.84
CAF4YKR036C RPR2P40571 144 aa3.58□□□□□ -1.84
CAF4YKR036C YFR035CP43608 114 aa3.58□□□□□ -1.84
CAF4YKR036C SMD1Q02260 146 aaPredicted RBP3.58□□□□□ -1.84
CAF4YKR036C YOR381W-AQ3E804 55 aa3.58□□□□□ -1.84
CAF4YKR036C RPL26AP05743 127 aaKnown RBP3.58□□□□□ -1.84
CAF4YKR036C RPL26BP53221 127 aaKnown RBP3.58□□□□□ -1.84
Retrieved 100 of 5,963 RNA–protein pairs in 12.8 ms