RNA–Protein interactions for RNA: YFR010W

UBP6, Transcript of Ubiquitin-specific protease, yeast

Gene UBP6, Length 1,500 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBP6	YFR010W	YJR146W	P47174	117 aa		2.77	□□□□□ -1.97
UBP6	YFR010W	YOR314W	Q12506	109 aa		2.77	□□□□□ -1.97
UBP6	YFR010W	STU1	P38198	1513 aa		2.76	□□□□□ -1.97
UBP6	YFR010W	BCK1	Q01389	1478 aa		2.76	□□□□□ -1.97
UBP6	YFR010W	FKS3	Q04952	1785 aa		2.76	□□□□□ -1.97
UBP6	YFR010W	MRPL31	P14063	131 aa	Predicted RBP	2.75	□□□□□ -1.97
UBP6	YFR010W	CDC25	P04821	1589 aa		2.75	□□□□□ -1.97
UBP6	YFR010W	PFY1	P07274	126 aa		2.74	□□□□□ -1.97
UBP6	YFR010W	YGL014C-A	P0C5N1	53 aa		2.74	□□□□□ -1.97
UBP6	YFR010W	YBL071C	P38185	102 aa		2.74	□□□□□ -1.97
UBP6	YFR010W	YCL048W-A	Q2V2Q2	79 aa		2.74	□□□□□ -1.97
UBP6	YFR010W	SPO14	P36126	1683 aa		2.74	□□□□□ -1.97
UBP6	YFR010W	YAL065C	O13511	128 aa		2.73	□□□□□ -1.97
UBP6	YFR010W	YER188C-A	P0C0V2	99 aa		2.73	□□□□□ -1.97
UBP6	YFR010W	PAU6	P0CE90	120 aa		2.73	□□□□□ -1.97
UBP6	YFR010W	PAU18	P0CE91	120 aa		2.73	□□□□□ -1.97
UBP6	YFR010W	AIM4	P38305	123 aa	Predicted RBP	2.73	□□□□□ -1.97
UBP6	YFR010W	SED1	Q01589	338 aa		2.73	□□□□□ -1.97
UBP6	YFR010W	MIX17	Q03667	156 aa		2.73	□□□□□ -1.97
UBP6	YFR010W	IRC21	Q04772	201 aa		2.73	□□□□□ -1.97
UBP6	YFR010W	YHR007C-A	Q07074	71 aa		2.73	□□□□□ -1.97
UBP6	YFR010W	TY3B-G	Q99315	1547 aa		2.73	□□□□□ -1.97
UBP6	YFR010W	UBR2	Q07963	1872 aa		2.73	□□□□□ -1.97
UBP6	YFR010W	TY4B-H	P0C2J7	1802 aa		2.73	□□□□□ -1.97
UBP6	YFR010W	PEP1	P32319	1579 aa		2.73	□□□□□ -1.97
UBP6	YFR010W	MPC2	P38857	129 aa		2.73	□□□□□ -1.97
UBP6	YFR010W	YKL065W-A	Q2V2P2	73 aa		2.73	□□□□□ -1.97
UBP6	YFR010W	YGR121W-A	Q3E816	71 aa		2.73	□□□□□ -1.97
UBP6	YFR010W	PMD1	P32634	1753 aa		2.72	□□□□□ -1.97
UBP6	YFR010W	YHR173C	P38864	112 aa		2.72	□□□□□ -1.97
UBP6	YFR010W	MRX7	P53869	86 aa		2.72	□□□□□ -1.97
UBP6	YFR010W	COX19	Q3E731	98 aa		2.72	□□□□□ -1.97
UBP6	YFR010W	PAU8	P0CE92	120 aa		2.71	□□□□□ -1.98
UBP6	YFR010W	PAU11	P0CE93	120 aa		2.71	□□□□□ -1.98
UBP6	YFR010W	QCR9	P22289	66 aa		2.71	□□□□□ -1.98
UBP6	YFR010W	PAU13	P38725	120 aa		2.71	□□□□□ -1.98
UBP6	YFR010W	YIL163C	P40448	117 aa		2.71	□□□□□ -1.98
UBP6	YFR010W	PAU4	P53427	120 aa		2.71	□□□□□ -1.98
UBP6	YFR010W	PAU10	Q03050	120 aa		2.71	□□□□□ -1.98
UBP6	YFR010W	RDS3	Q06835	107 aa	Predicted RBP	2.71	□□□□□ -1.98
UBP6	YFR010W	PAU9	Q3E770	120 aa		2.71	□□□□□ -1.98
UBP6	YFR010W	VPS55	P47111	140 aa		2.7	□□□□□ -1.98
UBP6	YFR010W	YMR122C	Q03879	124 aa		2.7	□□□□□ -1.98
UBP6	YFR010W	YLR162W	Q06235	118 aa		2.7	□□□□□ -1.98
UBP6	YFR010W	CDC39	P25655	2108 aa	Known RBP	2.7	□□□□□ -1.98
UBP6	YFR010W	USO1	P25386	1790 aa		2.7	□□□□□ -1.98
UBP6	YFR010W	RPL33A	P05744	107 aa	Known RBP	2.69	□□□□□ -1.98
UBP6	YFR010W	FPR2	P32472	135 aa		2.69	□□□□□ -1.98
UBP6	YFR010W	TAR1	Q8TGM6	124 aa		2.69	□□□□□ -1.98
UBP6	YFR010W	RIM15	P43565	1770 aa		2.68	□□□□□ -1.98
UBP6	YFR010W	CCW14	O13547	238 aa		2.68	□□□□□ -1.98
UBP6	YFR010W	APC1	P53886	1748 aa		2.68	□□□□□ -1.98
UBP6	YFR010W	YSY6	P38374	65 aa		2.68	□□□□□ -1.98
UBP6	YFR010W	BSC4	P53841	131 aa		2.68	□□□□□ -1.98
UBP6	YFR010W	YDR010C	Q12426	110 aa		2.68	□□□□□ -1.98
UBP6	YFR010W	YBT1	P32386	1661 aa		2.67	□□□□□ -1.98
UBP6	YFR010W	YSF3	P0C074	85 aa	Predicted RBP	2.66	□□□□□ -1.98
UBP6	YFR010W	PAU1	P0CE88	120 aa		2.66	□□□□□ -1.98
UBP6	YFR010W	PAU14	P0CE89	120 aa		2.66	□□□□□ -1.98
UBP6	YFR010W	AGA2	P32781	87 aa		2.66	□□□□□ -1.98
UBP6	YFR010W	DSE2	P38844	325 aa		2.66	□□□□□ -1.98
UBP6	YFR010W	SPI1	P40092	148 aa		2.66	□□□□□ -1.98
UBP6	YFR010W	ERI1	P62651	68 aa	Known RBP	2.66	□□□□□ -1.98
UBP6	YFR010W	TY4B-J	P47024	1803 aa		2.66	□□□□□ -1.98
UBP6	YFR010W	MLP2	P40457	1679 aa		2.65	□□□□□ -1.98
UBP6	YFR010W	LCL2	Q08045	131 aa		2.65	□□□□□ -1.99
UBP6	YFR010W	YIL156W-B	Q2V2P4	73 aa		2.65	□□□□□ -1.99
UBP6	YFR010W	YGR035W-A	Q45U48	73 aa		2.65	□□□□□ -1.99
UBP6	YFR010W	IML1	P47170	1584 aa		2.65	□□□□□ -1.99
UBP6	YFR010W	VAM10	Q08474	114 aa		2.64	□□□□□ -1.99
UBP6	YFR010W	CCW12	Q12127	133 aa		2.64	□□□□□ -1.99
UBP6	YFR010W	PRM7	Q12459	698 aa		2.64	□□□□□ -1.99
UBP6	YFR010W	YKL023C-A	Q2V2P3	75 aa		2.64	□□□□□ -1.99
UBP6	YFR010W	YGL041C-B	Q3E750	60 aa		2.64	□□□□□ -1.99
UBP6	YFR010W	AIM19	P40502	157 aa		2.63	□□□□□ -1.99
UBP6	YFR010W	YDR210W	Q03482	75 aa		2.63	□□□□□ -1.99
UBP6	YFR010W	YDR246W-A	Q3E763	66 aa		2.63	□□□□□ -1.99
UBP6	YFR010W	NOP10	Q6Q547	58 aa	Predicted RBP	2.63	□□□□□ -1.99
UBP6	YFR010W	STT4	P37297	1900 aa		2.63	□□□□□ -1.99
UBP6	YFR010W	CYR1	P08678	2026 aa	Known RBP	2.63	□□□□□ -1.99
UBP6	YFR010W	YEL008W	P40001	126 aa		2.63	□□□□□ -1.99
UBP6	YFR010W	MRPS12	P53732	153 aa		2.63	□□□□□ -1.99
UBP6	YFR010W	CHC1	P22137	1653 aa	Known RBP	2.62	□□□□□ -1.99
UBP6	YFR010W	MOT1	P32333	1867 aa		2.62	□□□□□ -1.99
UBP6	YFR010W	SMX2	P40204	77 aa	Known RBP	2.62	□□□□□ -1.99
UBP6	YFR010W	PAU20	Q08322	120 aa		2.62	□□□□□ -1.99
UBP6	YFR010W	NTE1	Q04958	1679 aa		2.61	□□□□□ -1.99
UBP6	YFR010W	RPS11A	P0CX47	156 aa	Known RBP	2.6	□□□□□ -1.99
UBP6	YFR010W	RPS11B	P0CX48	156 aa	Known RBP	2.6	□□□□□ -1.99
UBP6	YFR010W	PAU7	P39545	55 aa		2.6	□□□□□ -1.99
UBP6	YFR010W	THO2	P53552	1597 aa	Known RBP	2.59	□□□□□ -1.99
UBP6	YFR010W	RKR1	Q04781	1562 aa		2.59	□□□□□ -1.99
UBP6	YFR010W	YBR219C	P38317	127 aa		2.59	□□□□□ -1.99
UBP6	YFR010W	YGR240C-A	Q3E786	66 aa		2.58	□□□□□ -2
UBP6	YFR010W	YRF1-1	P0CX20	1796 aa		2.58	□□□□□ -2
UBP6	YFR010W	YRF1-5	P0CX21	1796 aa		2.58	□□□□□ -2
UBP6	YFR010W	YRF1-8	P0CX22	1796 aa		2.58	□□□□□ -2
UBP6	YFR010W	COA3	Q3E7B2	85 aa		2.58	□□□□□ -2
UBP6	YFR010W	DNF2	Q12675	1612 aa		2.57	□□□□□ -2
UBP6	YFR010W	NUP188	P52593	1655 aa	Known RBP	2.57	□□□□□ -2

Retrieved 100 of 5,963 RNA–protein pairs in 153.5 ms