RNA–Protein interactions for RNA: YDR339C

FCF1, Transcript of Putative PINc domain nuclease, yeast

Gene FCF1, Length 570 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
FCF1	YDR339C	VTC1	P40046	129 aa	RIP-Chip data	2.69	□□□□□ -1.98	not detected
FCF1	YDR339C	AIM19	P40502	157 aa		2.69	□□□□□ -1.98
FCF1	YDR339C	YJL027C	P47063	138 aa	Predicted RBP	2.69	□□□□□ -1.98
FCF1	YDR339C	VPS55	P47111	140 aa		2.69	□□□□□ -1.98
FCF1	YDR339C	KNH1	P50112	268 aa		2.69	□□□□□ -1.98
FCF1	YDR339C	IRC23	Q08416	157 aa		2.69	□□□□□ -1.98
FCF1	YDR339C	YDR029W	Q12111	104 aa		2.69	□□□□□ -1.98
FCF1	YDR339C	EMC6	Q12431	108 aa		2.69	□□□□□ -1.98
FCF1	YDR339C	RPL39	P04650	51 aa		2.68	□□□□□ -1.98
FCF1	YDR339C	MRPL38	P35996	138 aa	Predicted RBP	2.68	□□□□□ -1.98
FCF1	YDR339C	POR2	P40478	281 aa		2.68	□□□□□ -1.98
FCF1	YDR339C	DCV1	P43595	202 aa		2.68	□□□□□ -1.98
FCF1	YDR339C	YGR219W	P53307	113 aa		2.68	□□□□□ -1.98
FCF1	YDR339C	YDR381C-A	Q3E6R5	114 aa		2.68	□□□□□ -1.98
FCF1	YDR339C	YPL038W-A	Q3E7B4	63 aa		2.68	□□□□□ -1.98
FCF1	YDR339C	QCR8	P08525	94 aa		2.67	□□□□□ -1.98
FCF1	YDR339C	YER039C-A	P0CD97	72 aa		2.67	□□□□□ -1.98
FCF1	YDR339C	UBC5	P15732	148 aa		2.67	□□□□□ -1.98
FCF1	YDR339C	MPC2	P38857	129 aa		2.67	□□□□□ -1.98
FCF1	YDR339C	HUR1	P45820	110 aa		2.67	□□□□□ -1.98
FCF1	YDR339C	SBH1	P52870	82 aa		2.67	□□□□□ -1.98
FCF1	YDR339C	PRM7	Q12459	698 aa		2.67	□□□□□ -1.98
FCF1	YDR339C	YFR032C-B	Q8TGU2	87 aa		2.67	□□□□□ -1.98
FCF1	YDR339C	RPS28B	P0C0X0	67 aa	Known RBP	2.66	□□□□□ -1.98
FCF1	YDR339C	MRPS12	P53732	153 aa		2.66	□□□□□ -1.98
FCF1	YDR339C	RPS28A	Q3E7X9	67 aa	Predicted RBP	2.66	□□□□□ -1.98
FCF1	YDR339C	KTI11	Q3E840	82 aa		2.66	□□□□□ -1.98
FCF1	YDR339C	YHR032W-A	P0C5N6	59 aa		2.65	□□□□□ -1.99
FCF1	YDR339C	YSY6	P38374	65 aa		2.65	□□□□□ -1.99
FCF1	YDR339C	SHU1	P38751	150 aa		2.65	□□□□□ -1.99
FCF1	YDR339C	YJR146W	P47174	117 aa		2.65	□□□□□ -1.99
FCF1	YDR339C	YGL088W	P53151	121 aa		2.65	□□□□□ -1.99
FCF1	YDR339C	RPL26A	P05743	127 aa	Known RBP	2.64	□□□□□ -1.99
FCF1	YDR339C	RPL2A	P0CX45	254 aa	Known RBP	2.64	□□□□□ -1.99
FCF1	YDR339C	RPL2B	P0CX46	254 aa	Known RBP	2.64	□□□□□ -1.99
FCF1	YDR339C	YCR050C	P25630	102 aa		2.64	□□□□□ -1.99
FCF1	YDR339C	SVP26	P38869	228 aa		2.64	□□□□□ -1.99
FCF1	YDR339C	RPL26B	P53221	127 aa	Known RBP	2.64	□□□□□ -1.99
FCF1	YDR339C	YNL190W	P53872	204 aa		2.64	□□□□□ -1.99
FCF1	YDR339C	YPR195C	Q06594	109 aa		2.64	□□□□□ -1.99
FCF1	YDR339C	YBR200W-A	Q3E755	54 aa		2.64	□□□□□ -1.99
FCF1	YDR339C	YHL018W	P38744	120 aa	Predicted RBP	2.63	□□□□□ -1.99
FCF1	YDR339C	CTR2	P38865	189 aa		2.63	□□□□□ -1.99
FCF1	YDR339C	RGM1	Q00453	211 aa		2.63	□□□□□ -1.99
FCF1	YDR339C	YLR042C	Q07990	161 aa		2.63	□□□□□ -1.99
FCF1	YDR339C	CCW12	Q12127	133 aa		2.63	□□□□□ -1.99
FCF1	YDR339C	YLR412C-A	Q3E742	68 aa		2.63	□□□□□ -1.99
FCF1	YDR339C	YHR022C	P38763	256 aa		2.62	□□□□□ -1.99
FCF1	YDR339C	SED1	Q01589	338 aa		2.62	□□□□□ -1.99
FCF1	YDR339C	CDC39	P25655	2108 aa	Known RBP	2.61	□□□□□ -1.99
FCF1	YDR339C	YHL037C	P38733	133 aa		2.61	□□□□□ -1.99
FCF1	YDR339C	YAR029W	P39549	74 aa		2.61	□□□□□ -1.99
FCF1	YDR339C	YER187W	P40102	141 aa		2.61	□□□□□ -1.99
FCF1	YDR339C	IRC21	Q04772	201 aa		2.61	□□□□□ -1.99
FCF1	YDR339C	POL2	P21951	2222 aa	Known RBP	2.61	□□□□□ -1.99
FCF1	YDR339C	YJR107C-A	P0CT86	78 aa		2.6	□□□□□ -1.99
FCF1	YDR339C	YBR209W	P38311	105 aa		2.6	□□□□□ -1.99
FCF1	YDR339C	YEL008W	P40001	126 aa		2.6	□□□□□ -1.99
FCF1	YDR339C	YGR164W	P53291	111 aa		2.6	□□□□□ -1.99
FCF1	YDR339C	YLR285C-A	Q3E771	56 aa		2.6	□□□□□ -1.99
FCF1	YDR339C	YNL146C-A	Q3E7Z1	64 aa		2.6	□□□□□ -1.99
FCF1	YDR339C	BLM10	P43583	2143 aa		2.6	□□□□□ -1.99
FCF1	YDR339C	YLR236C	A0A023PZG4	107 aa		2.59	□□□□□ -1.99
FCF1	YDR339C	YAR023C	D6VPM8	179 aa		2.59	□□□□□ -1.99
FCF1	YDR339C	PMP3	P87284	55 aa		2.59	□□□□□ -1.99
FCF1	YDR339C	YCL048W-A	Q2V2Q2	79 aa		2.59	□□□□□ -1.99
FCF1	YDR339C	YML100W-A	Q8TGT0	57 aa		2.59	□□□□□ -1.99
FCF1	YDR339C	CYR1	P08678	2026 aa	Known RBP	2.59	□□□□□ -2
FCF1	YDR339C	FAS1	P07149	2051 aa	Known RBP	2.59	□□□□□ -2
FCF1	YDR339C	YRA2	P36036	203 aa	Known RBP RIP-Chip data	2.58	□□□□□ -2	not detected
FCF1	YDR339C	AIM4	P38305	123 aa	Predicted RBP	2.58	□□□□□ -2
FCF1	YDR339C	RPL33B	P41056	107 aa	Known RBP	2.58	□□□□□ -2
FCF1	YDR339C	YJL144W	P47009	104 aa		2.58	□□□□□ -2
FCF1	YDR339C	YGR025W	P53216	100 aa		2.58	□□□□□ -2
FCF1	YDR339C	RSM19	P53733	91 aa	Predicted RBP	2.58	□□□□□ -2
FCF1	YDR339C	YDR274C	P87283	123 aa		2.58	□□□□□ -2
FCF1	YDR339C	YMR295C	Q03559	197 aa		2.58	□□□□□ -2
FCF1	YDR339C	MRPS8	Q03799	155 aa		2.58	□□□□□ -2
FCF1	YDR339C	YOL014W	Q08110	124 aa		2.58	□□□□□ -2
FCF1	YDR339C	YOR011W-A	Q3E807	68 aa		2.58	□□□□□ -2
FCF1	YDR339C	TOM1	Q03280	3268 aa		2.58	□□□□□ -2
FCF1	YDR339C	UBC4	P15731	148 aa		2.57	□□□□□ -2
FCF1	YDR339C	YER135C	P40082	130 aa		2.57	□□□□□ -2
FCF1	YDR339C	YMR175W-A	Q3E766	64 aa		2.57	□□□□□ -2
FCF1	YDR339C	KSH1	Q8TGJ3	72 aa		2.57	□□□□□ -2
FCF1	YDR339C	ACC1	Q00955	2233 aa	Known RBP	2.56	□□□□□ -2
FCF1	YDR339C	YFR035C	P43608	114 aa		2.56	□□□□□ -2
FCF1	YDR339C	ATP18	P81450	59 aa		2.56	□□□□□ -2
FCF1	YDR339C	ATP20	Q12233	115 aa		2.56	□□□□□ -2
FCF1	YDR339C	YOR034C-A	Q3E735	80 aa		2.56	□□□□□ -2
FCF1	YDR339C	SEC16	P48415	2195 aa	Known RBP	2.56	□□□□□ -2
FCF1	YDR339C	FAB1	P34756	2278 aa		2.56	□□□□□ -2
FCF1	YDR339C	TDA2	P40045	126 aa		2.55	□□□□□ -2
FCF1	YDR339C	GAT4	P40569	121 aa		2.55	□□□□□ -2
FCF1	YDR339C	YFL019C	P43576	117 aa		2.55	□□□□□ -2
FCF1	YDR339C	YOR314W	Q12506	109 aa		2.55	□□□□□ -2
FCF1	YDR339C	YLL006W-A	Q3E814	58 aa		2.55	□□□□□ -2
FCF1	YDR339C	ICY1	Q04329	127 aa		2.54	□□□□□ -2
FCF1	YDR339C	VAM10	Q08474	114 aa		2.54	□□□□□ -2
FCF1	YDR339C	YPR013C	Q12145	317 aa		2.54	□□□□□ -2

Retrieved 100 of 5,963 RNA–protein pairs in 39.2 ms