RNA–Protein interactions for RNA: LSR1

LSR1, Transcript of U2 spliceosomal RNA (U2 snRNA), component of the spliceosome, yeastyeast

Gene LSR1, Length 1,175 nt, Biotype snRNA.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
LSR1LSR1 RPL2BP0CX46 254 aaKnown RBP6.45□□□□□ -1.38
LSR1LSR1 YOR020W-AQ3E824 90 aa6.45□□□□□ -1.38
LSR1LSR1 MRPL24P36525 258 aaPredicted RBP6.44□□□□□ -1.38
LSR1LSR1 YDL186WP48568 277 aa6.44□□□□□ -1.38
LSR1LSR1 YHR212W-AP0CX91 67 aa6.43□□□□□ -1.38
LSR1LSR1 KRE9P39005 276 aa6.43□□□□□ -1.38
LSR1LSR1 PBI2P0CT04 75 aaKnown RBP6.42□□□□□ -1.38
LSR1LSR1 MPC2P38857 129 aa6.42□□□□□ -1.38
LSR1LSR1 YPS5P53057 165 aa6.42□□□□□ -1.38
LSR1LSR1 RGM1Q00453 211 aa6.42□□□□□ -1.38
LSR1LSR1 YPL080CQ02826 108 aa6.42□□□□□ -1.38
LSR1LSR1 YIL059CP40520 121 aa6.41□□□□□ -1.38
LSR1LSR1 YDR381C-AQ3E6R5 114 aa6.41□□□□□ -1.38
LSR1LSR1 ENV10Q99382 181 aa6.41□□□□□ -1.38
LSR1LSR1 TOR1P35169 2470 aa6.4□□□□□ -1.38
LSR1LSR1 YHR139C-AO13536 103 aa6.4□□□□□ -1.38
LSR1LSR1 COF1Q03048 143 aaKnown RBP6.4□□□□□ -1.38
LSR1LSR1 PBA1Q05778 276 aa6.4□□□□□ -1.38
LSR1LSR1 YBR126W-AQ8TGU7 68 aa6.4□□□□□ -1.38
LSR1LSR1 MSN1P22148 382 aa6.39□□□□□ -1.39
LSR1LSR1 MSA2P36157 363 aa6.39□□□□□ -1.39
LSR1LSR1 YBR219CP38317 127 aa6.39□□□□□ -1.39
LSR1LSR1 YHL042WP38729 150 aa6.39□□□□□ -1.39
LSR1LSR1 SVP26P38869 228 aa6.39□□□□□ -1.39
LSR1LSR1 RPR2P40571 144 aa6.39□□□□□ -1.39
LSR1LSR1 CWP2P43497 92 aa6.39□□□□□ -1.39
LSR1LSR1 YGR039WP53225 103 aa6.39□□□□□ -1.39
LSR1LSR1 YMR295CQ03559 197 aa6.39□□□□□ -1.39
LSR1LSR1 SHH4Q06236 168 aa6.39□□□□□ -1.39
LSR1LSR1 EMC6Q12431 108 aa6.39□□□□□ -1.39
LSR1LSR1 CUP1-1P0CX80 61 aa6.37□□□□□ -1.39
LSR1LSR1 CUP1-2P0CX81 61 aa6.37□□□□□ -1.39
LSR1LSR1 TOA2P32774 122 aa6.37□□□□□ -1.39
LSR1LSR1 COX14P39103 70 aa6.37□□□□□ -1.39
LSR1LSR1 ARC15P40518 154 aaRIP-Chip data6.37□□□□□ -1.39not detected
LSR1LSR1 UBC11P52492 156 aa6.36□□□□□ -1.39
LSR1LSR1 YDR119W-AQ2V2P9 66 aa6.36□□□□□ -1.39
LSR1LSR1 ERI1P62651 68 aaKnown RBP6.35□□□□□ -1.39
LSR1LSR1 YBR144CP34215 104 aa6.34□□□□□ -1.39
LSR1LSR1 SMP1P38128 452 aa6.34□□□□□ -1.39
LSR1LSR1 YDR274CP87283 123 aa6.34□□□□□ -1.39
LSR1LSR1 YMR122W-AQ3E842 84 aa6.33□□□□□ -1.4
LSR1LSR1 YLR236CA0A023PZG4 107 aa6.32□□□□□ -1.4
LSR1LSR1 YKL069WP36088 180 aa6.32□□□□□ -1.4
LSR1LSR1 VAM10Q08474 114 aa6.32□□□□□ -1.4
LSR1LSR1 YPL038W-AQ3E7B4 63 aa6.32□□□□□ -1.4
LSR1LSR1 YPL229WQ99395 206 aa6.32□□□□□ -1.4
LSR1LSR1 YGR240C-AQ3E786 66 aa6.31□□□□□ -1.4
LSR1LSR1 TOM6P33448 61 aa6.3□□□□□ -1.4
LSR1LSR1 YLL006W-AQ3E814 58 aa6.3□□□□□ -1.4
LSR1LSR1 YJR107C-AP0CT86 78 aa6.29□□□□□ -1.4
LSR1LSR1 YCR001WP25347 104 aa6.29□□□□□ -1.4
LSR1LSR1 YSY6P38374 65 aa6.29□□□□□ -1.4
LSR1LSR1 ECM12O13529 151 aa6.28□□□□□ -1.4
LSR1LSR1 YDR029WQ12111 104 aa6.28□□□□□ -1.4
LSR1LSR1 YMR175W-AQ3E766 64 aa6.28□□□□□ -1.4
LSR1LSR1 HAL1Q01766 294 aa6.27□□□□□ -1.41
LSR1LSR1 YDL241WQ07738 123 aa6.27□□□□□ -1.41
LSR1LSR1 YOR034C-AQ3E735 80 aa6.27□□□□□ -1.41
LSR1LSR1 YAL065CO13511 128 aa6.26□□□□□ -1.41
LSR1LSR1 MRP10O75012 95 aa6.26□□□□□ -1.41
LSR1LSR1 ERG28P40030 148 aa6.26□□□□□ -1.41
LSR1LSR1 KNH1P50112 268 aa6.26□□□□□ -1.41
LSR1LSR1 IRC21Q04772 201 aa6.26□□□□□ -1.41
LSR1LSR1 YBL112CQ3E7Y4 105 aa6.26□□□□□ -1.41
LSR1LSR1 RPL29P05747 59 aaPredicted RBP6.24□□□□□ -1.41
LSR1LSR1 ICY1Q04329 127 aa6.24□□□□□ -1.41
LSR1LSR1 RDS3Q06835 107 aaPredicted RBP6.24□□□□□ -1.41
LSR1LSR1 TSC3Q3E790 80 aa6.24□□□□□ -1.41
LSR1LSR1 YGR035W-AQ45U48 73 aa6.24□□□□□ -1.41
LSR1LSR1 YPR010C-AA5Z2X5 72 aa6.23□□□□□ -1.41
LSR1LSR1 RSM19P53733 91 aaPredicted RBP6.23□□□□□ -1.41
LSR1LSR1 CRC1Q12289 327 aa6.23□□□□□ -1.41
LSR1LSR1 ATP18P81450 59 aa6.22□□□□□ -1.41
LSR1LSR1 YLR361C-AQ3E795 98 aa6.22□□□□□ -1.41
LSR1LSR1 YHL018WP38744 120 aaPredicted RBP6.21□□□□□ -1.42
LSR1LSR1 RPL26AP05743 127 aaKnown RBP6.2□□□□□ -1.42
LSR1LSR1 RPL26BP53221 127 aaKnown RBP6.2□□□□□ -1.42
LSR1LSR1 YLR285C-AQ3E771 56 aa6.2□□□□□ -1.42
LSR1LSR1 RPC10P40422 70 aa6.19□□□□□ -1.42
LSR1LSR1 MPC3P53311 146 aa6.18□□□□□ -1.42
LSR1LSR1 YKL183C-AQ3E765 70 aa6.18□□□□□ -1.42
LSR1LSR1 GAT4P40569 121 aa6.17□□□□□ -1.42
LSR1LSR1 MVB12P42939 101 aa6.17□□□□□ -1.42
LSR1LSR1 SGF11Q03067 99 aa6.17□□□□□ -1.42
LSR1LSR1 YMR320WQ04897 101 aa6.17□□□□□ -1.42
LSR1LSR1 RPL33AP05744 107 aaKnown RBP6.16□□□□□ -1.42
LSR1LSR1 YCL042WP25572 119 aa6.16□□□□□ -1.42
LSR1LSR1 YBL081WP38180 368 aaKnown RBP6.16□□□□□ -1.42
LSR1LSR1 RPL33BP41056 107 aaKnown RBP6.16□□□□□ -1.42
LSR1LSR1 SFT1P43682 97 aa6.16□□□□□ -1.42
LSR1LSR1 YLR415CO13578 112 aa6.15□□□□□ -1.42
LSR1LSR1 YBL039W-BP0C268 59 aa6.14□□□□□ -1.43
LSR1LSR1 TDA2P40045 126 aa6.14□□□□□ -1.43
LSR1LSR1 YFL019CP43576 117 aa6.14□□□□□ -1.43
LSR1LSR1 SMD1Q02260 146 aaPredicted RBP6.14□□□□□ -1.43
LSR1LSR1 YDR115WQ04598 105 aa6.13□□□□□ -1.43
LSR1LSR1 AQY2P0CD90 149 aa6.12□□□□□ -1.43
LSR1LSR1 YLR156WP0CE96 114 aa6.12□□□□□ -1.43
LSR1LSR1 YLR159WP0CE97 114 aa6.12□□□□□ -1.43
Retrieved 100 of 5,963 RNA–protein pairs in 23.6 ms