RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 CPLX4Q7Z7G2 160 aa5.22□□□□□ -1.57
SCN1A-218ENST00000640036 RNF10Q8N5U6 811 aaKnown RBP5.22□□□□□ -1.57
SCN1A-218ENST00000640036 ING5Q8WYH8 240 aa5.22□□□□□ -1.57
SCN1A-218ENST00000640036 TRMT13Q9NUP7 481 aaKnown RBP5.22□□□□□ -1.57
SCN1A-218ENST00000640036 DDX41Q9UJV9 622 aaKnown RBP5.22□□□□□ -1.57
SCN1A-218ENST00000640036 ITGA11Q9UKX5 1188 aa5.22□□□□□ -1.57
SCN1A-218ENST00000640036 COL1A2P08123 1366 aa5.22□□□□□ -1.57
SCN1A-218ENST00000640036 CAMTA1Q9Y6Y1 1673 aa5.22□□□□□ -1.57
SCN1A-218ENST00000640036 DEPDC5O75140 1603 aa5.22□□□□□ -1.57
SCN1A-218ENST00000640036 STK36Q9NRP7 1315 aa5.22□□□□□ -1.57
SCN1A-218ENST00000640036 DLL1O00548 723 aa5.22□□□□□ -1.57
SCN1A-218ENST00000640036 FSBPO95073 299 aa5.22□□□□□ -1.57
SCN1A-218ENST00000640036 ZRANB2O95218 330 aaKnown RBP eCLIP5.22□□□□□ -1.57
SCN1A-218ENST00000640036 CMA1P23946 247 aa5.22□□□□□ -1.57
SCN1A-218ENST00000640036 CCND3P30281 292 aaPredicted RBP5.22□□□□□ -1.57
SCN1A-218ENST00000640036 MED21Q13503 144 aa5.22□□□□□ -1.57
SCN1A-218ENST00000640036 C10orf76Q5T2E6 689 aa5.22□□□□□ -1.57
SCN1A-218ENST00000640036 GKAP1Q5VSY0 366 aaPredicted RBP5.22□□□□□ -1.57
SCN1A-218ENST00000640036 MFSD5Q6N075 450 aa5.22□□□□□ -1.57
SCN1A-218ENST00000640036 UGT3A1Q6NUS8 523 aa5.22□□□□□ -1.57
SCN1A-218ENST00000640036 NIPA1Q7RTP0 329 aa5.22□□□□□ -1.57
SCN1A-218ENST00000640036 TAB3Q8N5C8 712 aaPredicted RBP5.22□□□□□ -1.57
SCN1A-218ENST00000640036 OR14C36Q8NHC7 312 aa5.22□□□□□ -1.57
SCN1A-218ENST00000640036 MCUR1Q96AQ8 359 aa5.22□□□□□ -1.57
SCN1A-218ENST00000640036 SENP8Q96LD8 212 aa5.22□□□□□ -1.57
SCN1A-218ENST00000640036 RILPQ96NA2 401 aa5.22□□□□□ -1.57
SCN1A-218ENST00000640036 BAG1Q99933 345 aaPredicted RBP5.22□□□□□ -1.57
SCN1A-218ENST00000640036 PORCNQ9H237 461 aa5.22□□□□□ -1.57
SCN1A-218ENST00000640036 NEUROG2Q9H2A3 272 aa5.22□□□□□ -1.57
SCN1A-218ENST00000640036 KRT82Q9NSB4 513 aa5.22□□□□□ -1.57
SCN1A-218ENST00000640036 CA14Q9ULX7 337 aa5.22□□□□□ -1.57
SCN1A-218ENST00000640036 SNCAIPQ9Y6H5 919 aa5.22□□□□□ -1.57
SCN1A-218ENST00000640036 GOLGA8MH3BSY2 632 aa5.22□□□□□ -1.57
SCN1A-218ENST00000640036 TADA3O75528 432 aa5.22□□□□□ -1.57
SCN1A-218ENST00000640036 CSF2RAP15509 400 aa5.22□□□□□ -1.57
SCN1A-218ENST00000640036 CASRP41180 1078 aa5.22□□□□□ -1.57
SCN1A-218ENST00000640036 ACAP2Q15057 778 aa5.22□□□□□ -1.57
SCN1A-218ENST00000640036 GOLGA7BQ2TAP0 167 aa5.22□□□□□ -1.57
SCN1A-218ENST00000640036 MDH1BQ5I0G3 518 aa5.22□□□□□ -1.57
SCN1A-218ENST00000640036 SLC39A5Q6ZMH5 540 aa5.22□□□□□ -1.57
SCN1A-218ENST00000640036 PIP4K2CQ8TBX8 421 aa5.22□□□□□ -1.57
SCN1A-218ENST00000640036 RAD54LQ92698 747 aa5.22□□□□□ -1.57
SCN1A-218ENST00000640036 TRIM31Q9BZY9 425 aa5.22□□□□□ -1.57
SCN1A-218ENST00000640036 AGO4Q9HCK5 861 aaKnown RBP5.22□□□□□ -1.57
SCN1A-218ENST00000640036 ERVW-1Q9UQF0 538 aa5.22□□□□□ -1.57
SCN1A-218ENST00000640036 TCHHQ07283 1943 aa5.22□□□□□ -1.57
SCN1A-218ENST00000640036 F5P12259 2224 aa5.22□□□□□ -1.57
SCN1A-218ENST00000640036 RNASEH2AO75792 299 aaKnown RBP5.22□□□□□ -1.57
SCN1A-218ENST00000640036 EPHB2P29323 1055 aa5.22□□□□□ -1.57
SCN1A-218ENST00000640036 CDC25AP30304 524 aa5.22□□□□□ -1.57
SCN1A-218ENST00000640036 CSTF2P33240 577 aaKnown RBP eCLIP5.22□□□□□ -1.57
SCN1A-218ENST00000640036 TUSC3Q13454 348 aa5.22□□□□□ -1.57
SCN1A-218ENST00000640036 CEP85LQ5SZL2 805 aa5.22□□□□□ -1.57
SCN1A-218ENST00000640036 CYFIP2Q96F07 1278 aa5.22□□□□□ -1.57
SCN1A-218ENST00000640036 CNPY3Q9BT09 278 aa5.22□□□□□ -1.57
SCN1A-218ENST00000640036 PI4K2AQ9BTU6 479 aa5.22□□□□□ -1.57
SCN1A-218ENST00000640036 FOXP3Q9BZS1 431 aa5.22□□□□□ -1.57
SCN1A-218ENST00000640036 FAM117AQ9C073 453 aa5.22□□□□□ -1.57
SCN1A-218ENST00000640036 ALKBH4Q9NXW9 302 aa5.22□□□□□ -1.57
SCN1A-218ENST00000640036 MPP6Q9NZW5 540 aa5.22□□□□□ -1.57
SCN1A-218ENST00000640036 MARCH2Q9P0N8 246 aa5.22□□□□□ -1.57
SCN1A-218ENST00000640036 IP6K2Q9UHH9 426 aa5.22□□□□□ -1.57
SCN1A-218ENST00000640036 ASB3Q9Y575 518 aa5.22□□□□□ -1.57
SCN1A-218ENST00000640036 TIMM13Q9Y5L4 95 aaPredicted RBP5.22□□□□□ -1.57
SCN1A-218ENST00000640036 KIAA1210Q9ULL0 1709 aa5.22□□□□□ -1.57
SCN1A-218ENST00000640036 CASP8AP2Q9UKL3 1982 aa5.22□□□□□ -1.57
SCN1A-218ENST00000640036 MSH3P20585 1137 aa5.22□□□□□ -1.57
SCN1A-218ENST00000640036 PCK1P35558 622 aa5.22□□□□□ -1.57
SCN1A-218ENST00000640036 CASP2P42575 452 aa5.22□□□□□ -1.57
SCN1A-218ENST00000640036 PPP3CCP48454 512 aa5.22□□□□□ -1.57
SCN1A-218ENST00000640036 ME3Q16798 604 aa5.22□□□□□ -1.57
SCN1A-218ENST00000640036 ZRANB3Q5FWF4 1079 aa5.22□□□□□ -1.57
SCN1A-218ENST00000640036 KCNT2Q6UVM3 1135 aa5.22□□□□□ -1.57
SCN1A-218ENST00000640036 EXT2Q93063 718 aa5.22□□□□□ -1.57
SCN1A-218ENST00000640036 TRIM63Q969Q1 353 aa5.22□□□□□ -1.57
SCN1A-218ENST00000640036 SERPINB11Q96P15 392 aa5.22□□□□□ -1.57
SCN1A-218ENST00000640036 NIF3L1Q9GZT8 377 aa5.22□□□□□ -1.57
SCN1A-218ENST00000640036 CASS4Q9NQ75 786 aa5.22□□□□□ -1.57
SCN1A-218ENST00000640036 PCSK1NQ9UHG2 260 aa5.22□□□□□ -1.57
SCN1A-218ENST00000640036 SFMBT1Q9UHJ3 866 aa5.22□□□□□ -1.57
SCN1A-218ENST00000640036 NCOR1O75376 2440 aa5.22□□□□□ -1.57
SCN1A-218ENST00000640036 A0A1W2PQ45 241 aaPredicted RBP5.21□□□□□ -1.57
SCN1A-218ENST00000640036 A0A1W2PQY0 241 aa5.21□□□□□ -1.57
SCN1A-218ENST00000640036 EEF2KO00418 725 aaKnown RBP5.21□□□□□ -1.57
SCN1A-218ENST00000640036 KHNYNO15037 678 aaKnown RBP5.21□□□□□ -1.57
SCN1A-218ENST00000640036 TSPAN3O60637 253 aa5.21□□□□□ -1.57
SCN1A-218ENST00000640036 TIMP1P01033 207 aa5.21□□□□□ -1.57
SCN1A-218ENST00000640036 PDGFRAP16234 1089 aa5.21□□□□□ -1.57
SCN1A-218ENST00000640036 SCRN1Q12765 414 aa5.21□□□□□ -1.57
SCN1A-218ENST00000640036 MMEL1Q495T6 779 aa5.21□□□□□ -1.57
SCN1A-218ENST00000640036 TIGD7Q6NT04 549 aaPredicted RBP5.21□□□□□ -1.57
SCN1A-218ENST00000640036 PLPPR4Q7Z2D5 763 aa5.21□□□□□ -1.57
SCN1A-218ENST00000640036 C11orf96Q7Z7L8 435 aa5.21□□□□□ -1.57
SCN1A-218ENST00000640036 METTL21AQ8WXB1 218 aa5.21□□□□□ -1.57
SCN1A-218ENST00000640036 FEM1CQ96JP0 617 aa5.21□□□□□ -1.57
SCN1A-218ENST00000640036 TSPAN18Q96SJ8 248 aa5.21□□□□□ -1.57
SCN1A-218ENST00000640036 SLC38A3Q99624 504 aa5.21□□□□□ -1.57
SCN1A-218ENST00000640036 TRIM8Q9BZR9 551 aa5.21□□□□□ -1.57
SCN1A-218ENST00000640036 ASB7Q9H672 318 aa5.21□□□□□ -1.57
SCN1A-218ENST00000640036 SLC2A4RGQ9NR83 387 aa5.21□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms