RNA–Protein interactions for RNA: ENST00000637985.1

CLN3-264, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 764 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-264ENST00000637985 TNFRSF4P43489 277 aa17.51■□□□□ 0.39
CLN3-264ENST00000637985 ABCG1P45844 678 aa17.51■□□□□ 0.39
CLN3-264ENST00000637985 RPL10AP62906 217 aaKnown RBP17.51■□□□□ 0.39
CLN3-264ENST00000637985 KCNB1Q14721 858 aa17.51■□□□□ 0.39
CLN3-264ENST00000637985 DHCR24Q15392 516 aa17.51■□□□□ 0.39
CLN3-264ENST00000637985 MARCH9Q86YJ5 346 aa17.51■□□□□ 0.39
CLN3-264ENST00000637985 CD302Q8IX05 232 aa17.51■□□□□ 0.39
CLN3-264ENST00000637985 ZNF843Q8N446 348 aa17.51■□□□□ 0.39
CLN3-264ENST00000637985 KIAA1958Q8N8K9 716 aa17.51■□□□□ 0.39
CLN3-264ENST00000637985 LEO1Q8WVC0 666 aaPredicted RBP17.51■□□□□ 0.39
CLN3-264ENST00000637985 ZNF419Q96HQ0 510 aaPredicted RBP17.51■□□□□ 0.39
CLN3-264ENST00000637985 HSPA12BQ96MM6 686 aa17.51■□□□□ 0.39
CLN3-264ENST00000637985 PLIN2Q99541 437 aa17.51■□□□□ 0.39
CLN3-264ENST00000637985 BACH2Q9BYV9 841 aa17.51■□□□□ 0.39
CLN3-264ENST00000637985 ABCB6Q9NP58 842 aa17.51■□□□□ 0.39
CLN3-264ENST00000637985 CALCOCO1Q9P1Z2 691 aa17.51■□□□□ 0.39
CLN3-264ENST00000637985 TCHHQ07283 1943 aa17.51■□□□□ 0.39
CLN3-264ENST00000637985 MYO18BQ8IUG5 2567 aa17.5■□□□□ 0.39
CLN3-264ENST00000637985 LEFTY2O00292 366 aa17.5■□□□□ 0.39
CLN3-264ENST00000637985 CYP2F1P24903 491 aa17.5■□□□□ 0.39
CLN3-264ENST00000637985 GRIA2P42262 883 aa17.5■□□□□ 0.39
CLN3-264ENST00000637985 GRIK2Q13002 908 aa17.5■□□□□ 0.39
CLN3-264ENST00000637985 FILIP1Q7Z7B0 1213 aa17.5■□□□□ 0.39
CLN3-264ENST00000637985 C12orf40Q86WS4 652 aa17.5■□□□□ 0.39
CLN3-264ENST00000637985 FSIP1Q8NA03 581 aa17.5■□□□□ 0.39
CLN3-264ENST00000637985 BAHD1Q8TBE0 780 aaPredicted RBP17.5■□□□□ 0.39
CLN3-264ENST00000637985 ZDHHC5Q9C0B5 715 aa17.5■□□□□ 0.39
CLN3-264ENST00000637985 PRORYQ9H606 182 aa17.5■□□□□ 0.39
CLN3-264ENST00000637985 ARHGEF4Q9NR80 690 aa17.5■□□□□ 0.39
CLN3-264ENST00000637985 LARSQ9P2J5 1176 aaKnown RBP17.5■□□□□ 0.39
CLN3-264ENST00000637985 SUSD2Q9UGT4 822 aa17.5■□□□□ 0.39
CLN3-264ENST00000637985 DERAQ9Y315 318 aa17.5■□□□□ 0.39
CLN3-264ENST00000637985 VPS37CA5D8V6 355 aaPredicted RBP17.49■□□□□ 0.39
CLN3-264ENST00000637985 H0YCG3 227 aa17.49■□□□□ 0.39
CLN3-264ENST00000637985 OGTO15294 1046 aa17.49■□□□□ 0.39
CLN3-264ENST00000637985 TAF6P49848 677 aa17.49■□□□□ 0.39
CLN3-264ENST00000637985 TSPY1Q01534 308 aa17.49■□□□□ 0.39
CLN3-264ENST00000637985 RAD51AP2Q09MP3 1159 aa17.49■□□□□ 0.39
CLN3-264ENST00000637985 TMEM132DQ14C87 1099 aa17.49■□□□□ 0.39
CLN3-264ENST00000637985 SF3A1Q15459 793 aaKnown RBP17.49■□□□□ 0.39
CLN3-264ENST00000637985 RHBDF2Q6PJF5 856 aa17.49■□□□□ 0.39
CLN3-264ENST00000637985 PHTF2Q8N3S3 785 aa17.49■□□□□ 0.39
CLN3-264ENST00000637985 GALNT15Q8N3T1 639 aa17.49■□□□□ 0.39
CLN3-264ENST00000637985 PIP4K2CQ8TBX8 421 aa17.49■□□□□ 0.39
CLN3-264ENST00000637985 KCNV2Q8TDN2 545 aa17.49■□□□□ 0.39
CLN3-264ENST00000637985 SETD7Q8WTS6 366 aaKnown RBP17.49■□□□□ 0.39
CLN3-264ENST00000637985 KCNN1Q92952 543 aa17.49■□□□□ 0.39
CLN3-264ENST00000637985 FAM212AQ96EL1 285 aa17.49■□□□□ 0.39
CLN3-264ENST00000637985 INTS4Q96HW7 963 aaKnown RBP17.49■□□□□ 0.39
CLN3-264ENST00000637985 CPSF3Q9UKF6 684 aaKnown RBP17.49■□□□□ 0.39
CLN3-264ENST00000637985 ODF2LQ9ULJ1 636 aa17.49■□□□□ 0.39
CLN3-264ENST00000637985 KNTC1P50748 2209 aa17.48■□□□□ 0.39
CLN3-264ENST00000637985 PTPRQQ9UMZ3 2332 aa17.48■□□□□ 0.39
CLN3-264ENST00000637985 HECTD1Q9ULT8 2610 aa17.48■□□□□ 0.39
CLN3-264ENST00000637985 ZNF217O75362 1048 aa17.48■□□□□ 0.39
CLN3-264ENST00000637985 ATXN1LP0C7T5 689 aaKnown RBP17.48■□□□□ 0.39
CLN3-264ENST00000637985 GNSP15586 552 aa17.48■□□□□ 0.39
CLN3-264ENST00000637985 PFKLP17858 780 aa17.48■□□□□ 0.39
CLN3-264ENST00000637985 SCP2P22307 547 aa17.48■□□□□ 0.39
CLN3-264ENST00000637985 PDE6CP51160 858 aa17.48■□□□□ 0.39
CLN3-264ENST00000637985 RESTQ13127 1097 aa17.48■□□□□ 0.39
CLN3-264ENST00000637985 ARSHQ5FYA8 562 aa17.48■□□□□ 0.39
CLN3-264ENST00000637985 RGL4Q8IZJ4 473 aa17.48■□□□□ 0.39
CLN3-264ENST00000637985 PDCD7Q8N8D1 485 aaKnown RBP17.48■□□□□ 0.39
CLN3-264ENST00000637985 BICD1Q96G01 975 aa17.48■□□□□ 0.39
CLN3-264ENST00000637985 KPNA7A9QM74 516 aa17.47■□□□□ 0.39
CLN3-264ENST00000637985 PALM2-AKAP2B1ALY0 433 aaPredicted RBP17.47■□□□□ 0.39
CLN3-264ENST00000637985 SLC9A3R1O14745 358 aaPredicted RBP17.47■□□□□ 0.39
CLN3-264ENST00000637985 ZNF883P0CG24 379 aa17.47■□□□□ 0.39
CLN3-264ENST00000637985 KDSRQ06136 332 aa17.47■□□□□ 0.39
CLN3-264ENST00000637985 DBX2Q6ZNG2 339 aa17.47■□□□□ 0.39
CLN3-264ENST00000637985 TRMT11Q7Z4G4 463 aaKnown RBP17.47■□□□□ 0.39
CLN3-264ENST00000637985 DCBLD2Q96PD2 775 aa17.47■□□□□ 0.39
CLN3-264ENST00000637985 PKMYT1Q99640 499 aa17.47■□□□□ 0.39
CLN3-264ENST00000637985 ACBD6Q9BR61 282 aa17.47■□□□□ 0.39
CLN3-264ENST00000637985 CD248Q9HCU0 757 aa17.47■□□□□ 0.39
CLN3-264ENST00000637985 C2CD2Q9Y426 696 aa17.47■□□□□ 0.39
CLN3-264ENST00000637985 A0A0B4J269 797 aa17.46■□□□□ 0.39
CLN3-264ENST00000637985 NPHP3-ACAD11A0A0J9YXS1 232 aa17.46■□□□□ 0.39
CLN3-264ENST00000637985 A0A1W2PQF6 199 aa17.46■□□□□ 0.39
CLN3-264ENST00000637985 J3QKU1 62 aa17.46■□□□□ 0.39
CLN3-264ENST00000637985 SYT1P21579 422 aa17.46■□□□□ 0.39
CLN3-264ENST00000637985 ITPKBP27987 946 aa17.46■□□□□ 0.39
CLN3-264ENST00000637985 LIG4P49917 911 aa17.46■□□□□ 0.39
CLN3-264ENST00000637985 NCKAP1LP55160 1127 aa17.46■□□□□ 0.39
CLN3-264ENST00000637985 SLC7A9P82251 487 aa17.46■□□□□ 0.39
CLN3-264ENST00000637985 GRIN1Q05586 938 aa17.46■□□□□ 0.39
CLN3-264ENST00000637985 SYCP2LQ5T4T6 812 aa17.46■□□□□ 0.39
CLN3-264ENST00000637985 GPBP1Q86WP2 473 aa17.46■□□□□ 0.39
CLN3-264ENST00000637985 ZNF513Q8N8E2 541 aaPredicted RBP17.46■□□□□ 0.39
CLN3-264ENST00000637985 SPRYD3Q8NCJ5 442 aa17.46■□□□□ 0.39
CLN3-264ENST00000637985 RASSF8Q8NHQ8 419 aa17.46■□□□□ 0.39
CLN3-264ENST00000637985 FOXJ1Q92949 421 aa17.46■□□□□ 0.39
CLN3-264ENST00000637985 CDC6Q99741 560 aa17.46■□□□□ 0.39
CLN3-264ENST00000637985 ASB7Q9H672 318 aa17.46■□□□□ 0.39
CLN3-264ENST00000637985 IL21RQ9HBE5 538 aa17.46■□□□□ 0.39
CLN3-264ENST00000637985 BLOC1S4Q9NUP1 217 aa17.46■□□□□ 0.39
CLN3-264ENST00000637985 DPP3Q9NY33 737 aa17.46■□□□□ 0.39
CLN3-264ENST00000637985 HCN2Q9UL51 889 aa17.46■□□□□ 0.39
CLN3-264ENST00000637985 CYP8B1Q9UNU6 501 aa17.46■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms