RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 DMAP1Q9NPF5 467 aaPredicted RBP19.36■□□□□ 0.69
CLN3-254ENST00000637050 PTPRDP23468 1912 aa19.36■□□□□ 0.69
CLN3-254ENST00000637050 CTAGE15A4D2H0 777 aa19.35■□□□□ 0.69
CLN3-254ENST00000637050 CEP104O60308 925 aa19.35■□□□□ 0.69
CLN3-254ENST00000637050 CTAGE8P0CG41 777 aa19.35■□□□□ 0.69
CLN3-254ENST00000637050 PAFAH1B1P43034 410 aa19.35■□□□□ 0.69
CLN3-254ENST00000637050 ZNF143P52747 638 aaPredicted RBP19.35■□□□□ 0.69
CLN3-254ENST00000637050 TAS2R40P59535 323 aa19.35■□□□□ 0.69
CLN3-254ENST00000637050 ADCY1Q08828 1119 aa19.35■□□□□ 0.69
CLN3-254ENST00000637050 ACAP1Q15027 740 aa19.35■□□□□ 0.69
CLN3-254ENST00000637050 TAF5Q15542 800 aa19.35■□□□□ 0.69
CLN3-254ENST00000637050 USP41Q3LFD5 358 aa19.35■□□□□ 0.69
CLN3-254ENST00000637050 CCDC181Q5TID7 509 aa19.35■□□□□ 0.69
CLN3-254ENST00000637050 DAB2IPQ5VWQ8 1189 aa19.35■□□□□ 0.69
CLN3-254ENST00000637050 CC2D1AQ6P1N0 951 aaPredicted RBP19.35■□□□□ 0.69
CLN3-254ENST00000637050 CTAGE6Q86UF2 777 aa19.35■□□□□ 0.69
CLN3-254ENST00000637050 CTAGE4Q8IX94 777 aa19.35■□□□□ 0.69
CLN3-254ENST00000637050 COLGALT1Q8NBJ5 622 aa19.35■□□□□ 0.69
CLN3-254ENST00000637050 ACTRT1Q8TDG2 376 aa19.35■□□□□ 0.69
CLN3-254ENST00000637050 FUBP3Q96I24 572 aaKnown RBP eCLIP19.35■□□□□ 0.69
CLN3-254ENST00000637050 EHD2Q9NZN4 543 aa19.35■□□□□ 0.69
CLN3-254ENST00000637050 CXXC1Q9P0U4 656 aaPredicted RBP19.35■□□□□ 0.69
CLN3-254ENST00000637050 TTC7AQ9ULT0 858 aaPredicted RBP19.35■□□□□ 0.69
CLN3-254ENST00000637050 USTQ9Y2C2 406 aa19.35■□□□□ 0.69
CLN3-254ENST00000637050 EFCAB8A8MWE9 144 aa19.34■□□□□ 0.69
CLN3-254ENST00000637050 DPYSL4O14531 572 aa19.34■□□□□ 0.69
CLN3-254ENST00000637050 PSTPIP1O43586 416 aa19.34■□□□□ 0.69
CLN3-254ENST00000637050 GRAP2O75791 330 aa19.34■□□□□ 0.69
CLN3-254ENST00000637050 SYN1P17600 705 aa19.34■□□□□ 0.69
CLN3-254ENST00000637050 GPD1P21695 349 aa19.34■□□□□ 0.69
CLN3-254ENST00000637050 FLT3P36888 993 aa19.34■□□□□ 0.69
CLN3-254ENST00000637050 TKTL1P51854 596 aa19.34■□□□□ 0.69
CLN3-254ENST00000637050 RWDD2BP57060 319 aa19.34■□□□□ 0.69
CLN3-254ENST00000637050 RNASE9P60153 205 aaKnown RBP19.34■□□□□ 0.69
CLN3-254ENST00000637050 EFHC1Q5JVL4 640 aa19.34■□□□□ 0.69
CLN3-254ENST00000637050 GPRIN1Q7Z2K8 1008 aa19.34■□□□□ 0.69
CLN3-254ENST00000637050 RHOT1Q8IXI2 618 aa19.34■□□□□ 0.69
CLN3-254ENST00000637050 SIX6OS1Q8N1H7 587 aa19.34■□□□□ 0.69
CLN3-254ENST00000637050 RXFP2Q8WXD0 754 aa19.34■□□□□ 0.69
CLN3-254ENST00000637050 HERVK_113Q902F9 699 aa19.34■□□□□ 0.69
CLN3-254ENST00000637050 RPGRIP1Q96KN7 1286 aa19.34■□□□□ 0.69
CLN3-254ENST00000637050 CHST7Q9NS84 486 aa19.34■□□□□ 0.69
CLN3-254ENST00000637050 SMARCAL1Q9NZC9 954 aa19.34■□□□□ 0.69
CLN3-254ENST00000637050 UQCRHLA0A096LP55 91 aa19.33■□□□□ 0.69
CLN3-254ENST00000637050 FBXO21O94952 628 aa19.33■□□□□ 0.69
CLN3-254ENST00000637050 UQCRHP07919 91 aa19.33■□□□□ 0.69
CLN3-254ENST00000637050 PDGFRAP16234 1089 aa19.33■□□□□ 0.69
CLN3-254ENST00000637050 NDUFV1P49821 464 aa19.33■□□□□ 0.69
CLN3-254ENST00000637050 RABGGTBP53611 331 aa19.33■□□□□ 0.69
CLN3-254ENST00000637050 MRPS5P82675 430 aaKnown RBP19.33■□□□□ 0.69
CLN3-254ENST00000637050 ITIH3Q06033 890 aa19.33■□□□□ 0.69
CLN3-254ENST00000637050 LRRC38Q5VT99 294 aa19.33■□□□□ 0.69
CLN3-254ENST00000637050 RSPO2Q6UXX9 243 aaPredicted RBP19.33■□□□□ 0.69
CLN3-254ENST00000637050 ARFGAP1Q8N6T3 406 aa19.33■□□□□ 0.69
CLN3-254ENST00000637050 CNPY3Q9BT09 278 aa19.33■□□□□ 0.69
CLN3-254ENST00000637050 CNGB3Q9NQW8 809 aa19.33■□□□□ 0.69
CLN3-254ENST00000637050 SPG21Q9NZD8 308 aa19.33■□□□□ 0.69
CLN3-254ENST00000637050 SBDSQ9Y3A5 250 aaKnown RBP eCLIP19.33■□□□□ 0.69
CLN3-254ENST00000637050 CYP2F1P24903 491 aa19.33■□□□□ 0.68
CLN3-254ENST00000637050 GPR17Q13304 367 aa19.33■□□□□ 0.68
CLN3-254ENST00000637050 PRSS55Q6UWB4 352 aaPredicted RBP19.33■□□□□ 0.68
CLN3-254ENST00000637050 RSRC2Q7L4I2 434 aaKnown RBP19.33■□□□□ 0.68
CLN3-254ENST00000637050 PIK3R5Q8WYR1 880 aa19.33■□□□□ 0.68
CLN3-254ENST00000637050 TMEM169Q96HH4 297 aa19.33■□□□□ 0.68
CLN3-254ENST00000637050 RNPC3Q96LT9 517 aaKnown RBP19.33■□□□□ 0.68
CLN3-254ENST00000637050 ASNSD1Q9NWL6 643 aa19.33■□□□□ 0.68
CLN3-254ENST00000637050 MTRRQ9UBK8 725 aa19.33■□□□□ 0.68
CLN3-254ENST00000637050 PCDHB5Q9Y5E4 795 aa19.33■□□□□ 0.68
CLN3-254ENST00000637050 PATJQ8NI35 1801 aa19.32■□□□□ 0.68
CLN3-254ENST00000637050 PGRMC1O00264 195 aaKnown RBP19.32■□□□□ 0.68
CLN3-254ENST00000637050 LRCH4O75427 683 aa19.32■□□□□ 0.68
CLN3-254ENST00000637050 SOD2P04179 222 aa19.32■□□□□ 0.68
CLN3-254ENST00000637050 GLI1P08151 1106 aa19.32■□□□□ 0.68
CLN3-254ENST00000637050 TCF4P15884 667 aa19.32■□□□□ 0.68
CLN3-254ENST00000637050 MAGEA11P43364 429 aa19.32■□□□□ 0.68
CLN3-254ENST00000637050 SMARCB1Q12824 385 aa19.32■□□□□ 0.68
CLN3-254ENST00000637050 ZNF211Q13398 564 aaPredicted RBP19.32■□□□□ 0.68
CLN3-254ENST00000637050 CCDC14Q49A88 953 aa19.32■□□□□ 0.68
CLN3-254ENST00000637050 VSTM1Q6UX27 236 aa19.32■□□□□ 0.68
CLN3-254ENST00000637050 SCML4Q8N228 414 aa19.32■□□□□ 0.68
CLN3-254ENST00000637050 ULBP1Q9BZM6 244 aa19.32■□□□□ 0.68
CLN3-254ENST00000637050 ABI2Q9NYB9 513 aaPredicted RBP19.32■□□□□ 0.68
CLN3-254ENST00000637050 ZMYND8Q9ULU4 1186 aaPredicted RBP19.32■□□□□ 0.68
CLN3-254ENST00000637050 INSL6Q9Y581 213 aa19.32■□□□□ 0.68
CLN3-254ENST00000637050 BACE2Q9Y5Z0 518 aa19.32■□□□□ 0.68
CLN3-254ENST00000637050 HSF2BPO75031 334 aa19.31■□□□□ 0.68
CLN3-254ENST00000637050 LINC00271P0C7V0 271 aa19.31■□□□□ 0.68
CLN3-254ENST00000637050 PYGMP11217 842 aa19.31■□□□□ 0.68
CLN3-254ENST00000637050 PTPN9P43378 593 aa19.31■□□□□ 0.68
CLN3-254ENST00000637050 DAOAP59103 153 aa19.31■□□□□ 0.68
CLN3-254ENST00000637050 SLC8B1Q6J4K2 584 aa19.31■□□□□ 0.68
CLN3-254ENST00000637050 POLNQ7Z5Q5 900 aa19.31■□□□□ 0.68
CLN3-254ENST00000637050 DDX53Q86TM3 631 aaKnown RBP19.31■□□□□ 0.68
CLN3-254ENST00000637050 KATNAL2Q8IYT4 538 aa19.31■□□□□ 0.68
CLN3-254ENST00000637050 SPATA4Q8NEY3 305 aa19.31■□□□□ 0.68
CLN3-254ENST00000637050 PHOSPHO2Q8TCD6 241 aa19.31■□□□□ 0.68
CLN3-254ENST00000637050 RIN2Q8WYP3 895 aaPredicted RBP19.31■□□□□ 0.68
CLN3-254ENST00000637050 NDRG1Q92597 394 aaKnown RBP19.31■□□□□ 0.68
CLN3-254ENST00000637050 GOLGA1Q92805 767 aa19.31■□□□□ 0.68
CLN3-254ENST00000637050 CFAP57Q96MR6 1250 aa19.31■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 126.8 ms