RNA–Protein interactions for RNA: ENST00000623461.3

VCL-206, Transcript of vinculin, humanhuman

TSL 1 (best)

Gene VCL, Length 7,995 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-206ENST00000623461 MCRS1Q96EZ8 462 aa9.22□□□□□ -0.93
VCL-206ENST00000623461 IL1RL2Q9HB29 575 aa9.22□□□□□ -0.93
VCL-206ENST00000623461 PCDHA3Q9Y5H8 950 aa9.22□□□□□ -0.93
VCL-206ENST00000623461 TSPAN9O75954 239 aa9.22□□□□□ -0.93
VCL-206ENST00000623461 FKBP9O95302 570 aa9.22□□□□□ -0.93
VCL-206ENST00000623461 SP100P23497 879 aaPredicted RBP9.22□□□□□ -0.93
VCL-206ENST00000623461 MKRN4PQ13434 485 aaPredicted RBP9.22□□□□□ -0.93
VCL-206ENST00000623461 ZNF846Q147U1 533 aa9.22□□□□□ -0.93
VCL-206ENST00000623461 AGAP9Q5VTM2 703 aa9.22□□□□□ -0.93
VCL-206ENST00000623461 FKBP9P1Q75LS8 142 aa9.22□□□□□ -0.93
VCL-206ENST00000623461 DHRSXQ8N5I4 330 aa9.22□□□□□ -0.93
VCL-206ENST00000623461 USP33Q8TEY7 942 aa9.22□□□□□ -0.93
VCL-206ENST00000623461 VPS33AQ96AX1 596 aa9.22□□□□□ -0.93
VCL-206ENST00000623461 OSGEPQ9NPF4 335 aa9.22□□□□□ -0.93
VCL-206ENST00000623461 TCF7L2Q9NQB0 619 aa9.22□□□□□ -0.93
VCL-206ENST00000623461 DPPA5A6NC42 116 aa9.22□□□□□ -0.93
VCL-206ENST00000623461 KRT36O76013 467 aa9.22□□□□□ -0.93
VCL-206ENST00000623461 KRT6AP02538 564 aa9.22□□□□□ -0.93
VCL-206ENST00000623461 KRT6BP04259 564 aa9.22□□□□□ -0.93
VCL-206ENST00000623461 MMRN1Q13201 1228 aa9.22□□□□□ -0.93
VCL-206ENST00000623461 RRM2BQ7LG56 351 aa9.22□□□□□ -0.93
VCL-206ENST00000623461 DHFR2Q86XF0 187 aa9.22□□□□□ -0.93
VCL-206ENST00000623461 ZCCHC9Q8N567 271 aaKnown RBP9.22□□□□□ -0.93
VCL-206ENST00000623461 CAPSLQ8WWF8 208 aa9.22□□□□□ -0.93
VCL-206ENST00000623461 OLFM1Q99784 485 aa9.22□□□□□ -0.93
VCL-206ENST00000623461 PNMA3Q9UL41 463 aa9.22□□□□□ -0.93
VCL-206ENST00000623461 UMODL1Q5DID0 1318 aa9.22□□□□□ -0.93
VCL-206ENST00000623461 TPST1O60507 370 aa9.22□□□□□ -0.93
VCL-206ENST00000623461 ZC3H11AO75152 810 aaKnown RBP eCLIP9.22□□□□□ -0.934e-7■□□□□ 9.7
VCL-206ENST00000623461 UQCRBP14927 111 aa9.22□□□□□ -0.93
VCL-206ENST00000623461 KRT6CP48668 564 aa9.22□□□□□ -0.93
VCL-206ENST00000623461 CBX3Q13185 183 aa9.22□□□□□ -0.93
VCL-206ENST00000623461 EGFL6Q8IUX8 553 aa9.22□□□□□ -0.93
VCL-206ENST00000623461 ARHGEF19Q8IW93 802 aa9.22□□□□□ -0.93
VCL-206ENST00000623461 MAB21L3Q8N8X9 362 aa9.22□□□□□ -0.93
VCL-206ENST00000623461 STN1Q9H668 368 aaKnown RBP9.22□□□□□ -0.93
VCL-206ENST00000623461 PCYOX1Q9UHG3 505 aa9.22□□□□□ -0.93
VCL-206ENST00000623461 TPRKBQ9Y3C4 175 aa9.22□□□□□ -0.93
VCL-206ENST00000623461 EVPLLA8MZ36 301 aa9.22□□□□□ -0.93
VCL-206ENST00000623461 CNOT3O75175 753 aaKnown RBP9.22□□□□□ -0.93
VCL-206ENST00000623461 PROSCO94903 275 aa9.22□□□□□ -0.93
VCL-206ENST00000623461 EIF2AK2P19525 551 aaKnown RBP9.22□□□□□ -0.93
VCL-206ENST00000623461 GPD1P21695 349 aa9.22□□□□□ -0.93
VCL-206ENST00000623461 EFNA5P52803 228 aa9.22□□□□□ -0.93
VCL-206ENST00000623461 TUBA4AP68366 448 aa9.22□□□□□ -0.93
VCL-206ENST00000623461 FCHO2Q0JRZ9 810 aa9.22□□□□□ -0.93
VCL-206ENST00000623461 RRP1BQ14684 758 aaKnown RBP9.22□□□□□ -0.93
VCL-206ENST00000623461 SUSD4Q5VX71 490 aa9.22□□□□□ -0.93
VCL-206ENST00000623461 SETD9Q8NE22 299 aa9.22□□□□□ -0.93
VCL-206ENST00000623461 RORBQ92753 470 aa9.22□□□□□ -0.93
VCL-206ENST00000623461 CNKSR1Q969H4 720 aa9.22□□□□□ -0.93
VCL-206ENST00000623461 FAM193BQ96PV7 902 aaPredicted RBP9.22□□□□□ -0.93
VCL-206ENST00000623461 CASS4Q9NQ75 786 aa9.22□□□□□ -0.93
VCL-206ENST00000623461 KLHL3Q9UH77 587 aa9.22□□□□□ -0.93
VCL-206ENST00000623461 ASAP1Q9ULH1 1129 aa9.22□□□□□ -0.93
VCL-206ENST00000623461 FOXN3O00409 490 aaPredicted RBP9.21□□□□□ -0.93
VCL-206ENST00000623461 MYL4P12829 197 aa9.21□□□□□ -0.93
VCL-206ENST00000623461 TRAF3Q13114 568 aa9.21□□□□□ -0.93
VCL-206ENST00000623461 LINC00523Q86TU6 105 aa9.21□□□□□ -0.93
VCL-206ENST00000623461 RBM46Q8TBY0 533 aaKnown RBP9.21□□□□□ -0.93
VCL-206ENST00000623461 REXO4Q9GZR2 422 aaKnown RBP9.21□□□□□ -0.93
VCL-206ENST00000623461 KRT20P35900 424 aa9.21□□□□□ -0.93
VCL-206ENST00000623461 PLEKHG4BQ96PX9 1271 aa9.21□□□□□ -0.93
VCL-206ENST00000623461 CLEC4MQ9H2X3 399 aaPredicted RBP9.21□□□□□ -0.93
VCL-206ENST00000623461 IMPAD1Q9NX62 359 aa9.21□□□□□ -0.93
VCL-206ENST00000623461 TMA7Q9Y2S6 64 aaKnown RBP9.21□□□□□ -0.93
VCL-206ENST00000623461 ERBB3P21860 1342 aa9.21□□□□□ -0.93
VCL-206ENST00000623461 UBA6A0AVT1 1052 aaPredicted RBP9.21□□□□□ -0.94
VCL-206ENST00000623461 SDR42E2A6NKP2 422 aa9.21□□□□□ -0.94
VCL-206ENST00000623461 C2CD2LO14523 706 aa9.21□□□□□ -0.94
VCL-206ENST00000623461 ENTPD5O75356 428 aa9.21□□□□□ -0.94
VCL-206ENST00000623461 TOMM70O94826 608 aa9.21□□□□□ -0.94
VCL-206ENST00000623461 YWHABP31946 246 aaKnown RBP9.21□□□□□ -0.94
VCL-206ENST00000623461 PHKA2P46019 1235 aa9.21□□□□□ -0.94
VCL-206ENST00000623461 SENP2Q9HC62 589 aa9.21□□□□□ -0.94
VCL-206ENST00000623461 E9PBE3 544 aa9.21□□□□□ -0.94
VCL-206ENST00000623461 TSHRP16473 764 aa9.21□□□□□ -0.94
VCL-206ENST00000623461 MUTP22033 750 aa9.21□□□□□ -0.94
VCL-206ENST00000623461 CDK7P50613 346 aa9.21□□□□□ -0.94
VCL-206ENST00000623461 HSD17B4P51659 736 aa9.21□□□□□ -0.94
VCL-206ENST00000623461 BNC1Q01954 994 aa9.21□□□□□ -0.94
VCL-206ENST00000623461 BNIP1Q12981 228 aa9.21□□□□□ -0.94
VCL-206ENST00000623461 PKN2Q16513 984 aaKnown RBP9.21□□□□□ -0.94
VCL-206ENST00000623461 DOK7Q18PE1 504 aa9.21□□□□□ -0.94
VCL-206ENST00000623461 KYAT3Q6YP21 454 aaKnown RBP9.21□□□□□ -0.94
VCL-206ENST00000623461 TAS2R42Q7RTR8 314 aa9.21□□□□□ -0.94
VCL-206ENST00000623461 CCDC33Q8N5R6 958 aa9.21□□□□□ -0.94
VCL-206ENST00000623461 COX4I2Q96KJ9 171 aa9.21□□□□□ -0.94
VCL-206ENST00000623461 RPAP3Q9H6T3 665 aaPredicted RBP9.21□□□□□ -0.94
VCL-206ENST00000623461 CROTQ9UKG9 612 aa9.21□□□□□ -0.94
VCL-206ENST00000623461 SALL1Q9NSC2 1324 aa9.21□□□□□ -0.94
VCL-206ENST00000623461 IDH3BO43837 385 aa9.21□□□□□ -0.94
VCL-206ENST00000623461 SGPL1O95470 568 aa9.21□□□□□ -0.94
VCL-206ENST00000623461 XPAP23025 273 aaPredicted RBP9.21□□□□□ -0.94
VCL-206ENST00000623461 TPI1P60174 286 aa9.21□□□□□ -0.94
VCL-206ENST00000623461 PRKAA1Q13131 559 aa9.21□□□□□ -0.94
VCL-206ENST00000623461 MYBPC2Q14324 1141 aa9.21□□□□□ -0.94
VCL-206ENST00000623461 NEDD8Q15843 81 aa9.21□□□□□ -0.94
VCL-206ENST00000623461 QPCTQ16769 361 aa9.21□□□□□ -0.94
VCL-206ENST00000623461 LIN52Q52LA3 116 aa9.21□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms