RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 GPRIN1Q7Z2K8 1008 aa20.82■□□□□ 0.92
UPF3A-211ENST00000618700 ITIH5Q86UX2 942 aa20.82■□□□□ 0.92
UPF3A-211ENST00000618700 TMC8Q8IU68 726 aa20.82■□□□□ 0.92
UPF3A-211ENST00000618700 ELMOD1Q8N336 334 aa20.82■□□□□ 0.92
UPF3A-211ENST00000618700 SECISBP2LQ93073 1101 aaKnown RBP20.82■□□□□ 0.92
UPF3A-211ENST00000618700 TTLL2Q9BWV7 592 aa20.82■□□□□ 0.92
UPF3A-211ENST00000618700 APOL5Q9BWW9 433 aa20.82■□□□□ 0.92
UPF3A-211ENST00000618700 LRRC3Q9BY71 257 aa20.82■□□□□ 0.92
UPF3A-211ENST00000618700 ABHD10Q9NUJ1 306 aa20.82■□□□□ 0.92
UPF3A-211ENST00000618700 IL37Q9NZH6 218 aa20.82■□□□□ 0.92
UPF3A-211ENST00000618700 CD207Q9UJ71 328 aa20.82■□□□□ 0.92
UPF3A-211ENST00000618700 COG5Q9UP83 839 aa20.82■□□□□ 0.92
UPF3A-211ENST00000618700 MYH10P35580 1976 aa20.81■□□□□ 0.92
UPF3A-211ENST00000618700 AKR1B15C9JRZ8 316 aaPredicted RBP20.81■□□□□ 0.92
UPF3A-211ENST00000618700 CDH5P33151 784 aaPredicted RBP20.81■□□□□ 0.92
UPF3A-211ENST00000618700 EPHA5P54756 1037 aa20.81■□□□□ 0.92
UPF3A-211ENST00000618700 GOLGA8FQ08AF8 430 aa20.81■□□□□ 0.92
UPF3A-211ENST00000618700 GOLGA8DPQ0D2H9 430 aa20.81■□□□□ 0.92
UPF3A-211ENST00000618700 MTMR3Q13615 1198 aa20.81■□□□□ 0.92
UPF3A-211ENST00000618700 RAB41Q5JT25 222 aa20.81■□□□□ 0.92
UPF3A-211ENST00000618700 DENND5BQ6ZUT9 1274 aa20.81■□□□□ 0.92
UPF3A-211ENST00000618700 DNAJB7Q7Z6W7 309 aaPredicted RBP20.81■□□□□ 0.92
UPF3A-211ENST00000618700 PIGZQ86VD9 579 aa20.81■□□□□ 0.92
UPF3A-211ENST00000618700 PASD1Q8IV76 773 aa20.81■□□□□ 0.92
UPF3A-211ENST00000618700 CNGA4Q8IV77 575 aa20.81■□□□□ 0.92
UPF3A-211ENST00000618700 OR8K1Q8NGG5 319 aa20.81■□□□□ 0.92
UPF3A-211ENST00000618700 TRMT2BQ96GJ1 504 aaKnown RBP20.81■□□□□ 0.92
UPF3A-211ENST00000618700 MYRFLQ96LU7 910 aa20.81■□□□□ 0.92
UPF3A-211ENST00000618700 HCFC1R1Q9NWW0 138 aa20.81■□□□□ 0.92
UPF3A-211ENST00000618700 DNMT3BQ9UBC3 853 aaKnown RBP20.81■□□□□ 0.92
UPF3A-211ENST00000618700 CYTH4Q9UIA0 394 aa20.81■□□□□ 0.92
UPF3A-211ENST00000618700 CDH22Q9UJ99 828 aa20.81■□□□□ 0.92
UPF3A-211ENST00000618700 LSM8O95777 96 aaKnown RBP20.8■□□□□ 0.92
UPF3A-211ENST00000618700 RPL34P49207 117 aaKnown RBP20.8■□□□□ 0.92
UPF3A-211ENST00000618700 ADKP55263 362 aaKnown RBP20.8■□□□□ 0.92
UPF3A-211ENST00000618700 USP46P62068 366 aa20.8■□□□□ 0.92
UPF3A-211ENST00000618700 KLHL30Q0D2K2 578 aa20.8■□□□□ 0.92
UPF3A-211ENST00000618700 CLUL1Q15846 466 aa20.8■□□□□ 0.92
UPF3A-211ENST00000618700 PMF1Q6P1K2 205 aa20.8■□□□□ 0.92
UPF3A-211ENST00000618700 WDR59Q6PJI9 974 aa20.8■□□□□ 0.92
UPF3A-211ENST00000618700 PHF6Q8IWS0 365 aaKnown RBP eCLIP20.8■□□□□ 0.92
UPF3A-211ENST00000618700 NUP93Q8N1F7 819 aa20.8■□□□□ 0.92
UPF3A-211ENST00000618700 WDTC1Q8N5D0 677 aa20.8■□□□□ 0.92
UPF3A-211ENST00000618700 TC2NQ8N9U0 490 aa20.8■□□□□ 0.92
UPF3A-211ENST00000618700 STK32AQ8WU08 396 aa20.8■□□□□ 0.92
UPF3A-211ENST00000618700 KCTD13Q8WZ19 329 aa20.8■□□□□ 0.92
UPF3A-211ENST00000618700 SUSD6Q92537 303 aa20.8■□□□□ 0.92
UPF3A-211ENST00000618700 ZNF512Q96ME7 567 aaPredicted RBP20.8■□□□□ 0.92
UPF3A-211ENST00000618700 HAUS4Q9H6D7 363 aa20.8■□□□□ 0.92
UPF3A-211ENST00000618700 ZNF334Q9HCZ1 680 aaPredicted RBP20.8■□□□□ 0.92
UPF3A-211ENST00000618700 AVENQ9NQS1 362 aaPredicted RBP20.8■□□□□ 0.92
UPF3A-211ENST00000618700 NOTCH4Q99466 2003 aa20.79■□□□□ 0.92
UPF3A-211ENST00000618700 FAM92AA1XBS5 289 aa20.79■□□□□ 0.92
UPF3A-211ENST00000618700 RTN3O95197 1032 aaPredicted RBP20.79■□□□□ 0.92
UPF3A-211ENST00000618700 CYP1A1P04798 512 aaPredicted RBP20.79■□□□□ 0.92
UPF3A-211ENST00000618700 SERPING1P05155 500 aa20.79■□□□□ 0.92
UPF3A-211ENST00000618700 RHOP08100 348 aa20.79■□□□□ 0.92
UPF3A-211ENST00000618700 NOMO3P69849 1222 aa20.79■□□□□ 0.92
UPF3A-211ENST00000618700 CES5AQ6NT32 575 aa20.79■□□□□ 0.92
UPF3A-211ENST00000618700 ZNF571Q7Z3V5 609 aaPredicted RBP20.79■□□□□ 0.92
UPF3A-211ENST00000618700 GRASPQ7Z6J2 395 aaPredicted RBP20.79■□□□□ 0.92
UPF3A-211ENST00000618700 C1orf131Q8NDD1 294 aaKnown RBP20.79■□□□□ 0.92
UPF3A-211ENST00000618700 SCAMP5Q8TAC9 235 aa20.79■□□□□ 0.92
UPF3A-211ENST00000618700 HSFY1Q96LI6 401 aa20.79■□□□□ 0.92
UPF3A-211ENST00000618700 AGPAT1Q99943 283 aa20.79■□□□□ 0.92
UPF3A-211ENST00000618700 CORO1BQ9BR76 489 aa20.79■□□□□ 0.92
UPF3A-211ENST00000618700 PIDD1Q9HB75 910 aa20.79■□□□□ 0.92
UPF3A-211ENST00000618700 IL21Q9HBE4 155 aa20.79■□□□□ 0.92
UPF3A-211ENST00000618700 PRDM6Q9NQX0 595 aa20.79■□□□□ 0.92
UPF3A-211ENST00000618700 COMMD8Q9NX08 183 aa20.79■□□□□ 0.92
UPF3A-211ENST00000618700 IMPACTQ9P2X3 320 aa20.79■□□□□ 0.92
UPF3A-211ENST00000618700 CEP83Q9Y592 693 aa20.79■□□□□ 0.92
UPF3A-211ENST00000618700 DENND4AQ7Z401 1863 aa20.79■□□□□ 0.92
UPF3A-211ENST00000618700 SKILP12757 684 aa20.78■□□□□ 0.92
UPF3A-211ENST00000618700 PTPN2P17706 415 aa20.78■□□□□ 0.92
UPF3A-211ENST00000618700 KIF11P52732 1056 aa20.78■□□□□ 0.92
UPF3A-211ENST00000618700 NTHL1P78549 312 aa20.78■□□□□ 0.92
UPF3A-211ENST00000618700 PDCLQ13371 301 aa20.78■□□□□ 0.92
UPF3A-211ENST00000618700 SMAD4Q13485 552 aaKnown RBP20.78■□□□□ 0.92
UPF3A-211ENST00000618700 LEXMQ3ZCV2 418 aa20.78■□□□□ 0.92
UPF3A-211ENST00000618700 TRIM72Q6ZMU5 477 aa20.78■□□□□ 0.92
UPF3A-211ENST00000618700 DRC7Q8IY82 874 aa20.78■□□□□ 0.92
UPF3A-211ENST00000618700 LEMD2Q8NC56 503 aa20.78■□□□□ 0.92
UPF3A-211ENST00000618700 TMEM35BQ8NCS4 154 aa20.78■□□□□ 0.92
UPF3A-211ENST00000618700 PCDHB18PQ96TA0 734 aa20.78■□□□□ 0.92
UPF3A-211ENST00000618700 SLC4A5Q9BY07 1137 aa20.78■□□□□ 0.92
UPF3A-211ENST00000618700 PDCL3Q9H2J4 239 aa20.78■□□□□ 0.92
UPF3A-211ENST00000618700 CYLDQ9NQC7 956 aa20.78■□□□□ 0.92
UPF3A-211ENST00000618700 ASAH2Q9NR71 780 aa20.78■□□□□ 0.92
UPF3A-211ENST00000618700 EHD2Q9NZN4 543 aa20.78■□□□□ 0.92
UPF3A-211ENST00000618700 USP15Q9Y4E8 981 aaPredicted RBP20.78■□□□□ 0.92
UPF3A-211ENST00000618700 BZW2Q9Y6E2 419 aaKnown RBP20.78■□□□□ 0.92
UPF3A-211ENST00000618700 USP3Q9Y6I4 520 aa20.78■□□□□ 0.92
UPF3A-211ENST00000618700 CLUHO75153 1309 aa20.78■□□□□ 0.92
UPF3A-211ENST00000618700 DOCK6Q96HP0 2047 aa20.77■□□□□ 0.92
UPF3A-211ENST00000618700 GRXCR2A6NFK2 248 aa20.77■□□□□ 0.92
UPF3A-211ENST00000618700 NRG2O14511 850 aaPredicted RBP20.77■□□□□ 0.92
UPF3A-211ENST00000618700 TADA3O75528 432 aa20.77■□□□□ 0.92
UPF3A-211ENST00000618700 CCR2P41597 374 aa20.77■□□□□ 0.92
UPF3A-211ENST00000618700 MTHFRP42898 656 aa20.77■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms