RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 MUC3AQ02505 3323 aa17.48■□□□□ 0.39
CCDC28A-202ENST00000611852 IFRD2Q12894 506 aaPredicted RBP17.48■□□□□ 0.39
CCDC28A-202ENST00000611852 TAF10Q12962 218 aa17.48■□□□□ 0.39
CCDC28A-202ENST00000611852 NR1I3Q14994 352 aa17.48■□□□□ 0.39
CCDC28A-202ENST00000611852 ARHGAP15Q53QZ3 475 aa17.48■□□□□ 0.39
CCDC28A-202ENST00000611852 RNF214Q8ND24 703 aa17.48■□□□□ 0.39
CCDC28A-202ENST00000611852 UBXN6Q9BZV1 441 aa17.48■□□□□ 0.39
CCDC28A-202ENST00000611852 SLITRK6Q9H5Y7 841 aa17.48■□□□□ 0.39
CCDC28A-202ENST00000611852 KCNK12Q9HB15 430 aa17.48■□□□□ 0.39
CCDC28A-202ENST00000611852 COMMD8Q9NX08 183 aa17.48■□□□□ 0.39
CCDC28A-202ENST00000611852 DAAM1Q9Y4D1 1078 aa17.48■□□□□ 0.39
CCDC28A-202ENST00000611852 FAM92AA1XBS5 289 aa17.47■□□□□ 0.39
CCDC28A-202ENST00000611852 ANHXE9PGG2 379 aa17.47■□□□□ 0.39
CCDC28A-202ENST00000611852 F8VZ95 297 aa17.47■□□□□ 0.39
CCDC28A-202ENST00000611852 TULP2O00295 520 aa17.47■□□□□ 0.39
CCDC28A-202ENST00000611852 ASGR2P07307 311 aa17.47■□□□□ 0.39
CCDC28A-202ENST00000611852 SLC8A3P57103 927 aa17.47■□□□□ 0.39
CCDC28A-202ENST00000611852 PDE4CQ08493 712 aa17.47■□□□□ 0.39
CCDC28A-202ENST00000611852 BST2Q10589 180 aaKnown RBP17.47■□□□□ 0.39
CCDC28A-202ENST00000611852 HTR4Q13639 388 aa17.47■□□□□ 0.39
CCDC28A-202ENST00000611852 PTPN21Q16825 1174 aa17.47■□□□□ 0.39
CCDC28A-202ENST00000611852 FAM78AQ5JUQ0 283 aa17.47■□□□□ 0.39
CCDC28A-202ENST00000611852 GPR158Q5T848 1215 aa17.47■□□□□ 0.39
CCDC28A-202ENST00000611852 PARM1Q6UWI2 310 aa17.47■□□□□ 0.39
CCDC28A-202ENST00000611852 PIGZQ86VD9 579 aa17.47■□□□□ 0.39
CCDC28A-202ENST00000611852 ST13P5Q8NFI4 369 aaPredicted RBP17.47■□□□□ 0.39
CCDC28A-202ENST00000611852 NEK11Q8NG66 645 aa17.47■□□□□ 0.39
CCDC28A-202ENST00000611852 UBA3Q8TBC4 463 aa17.47■□□□□ 0.39
CCDC28A-202ENST00000611852 ZNF606Q8WXB4 792 aa17.47■□□□□ 0.39
CCDC28A-202ENST00000611852 MRPS31Q92665 395 aaKnown RBP17.47■□□□□ 0.39
CCDC28A-202ENST00000611852 ASB16Q96NS5 453 aa17.47■□□□□ 0.39
CCDC28A-202ENST00000611852 SLITRK1Q96PX8 696 aa17.47■□□□□ 0.39
CCDC28A-202ENST00000611852 SLC46A2Q9BY10 475 aa17.47■□□□□ 0.39
CCDC28A-202ENST00000611852 TASP1Q9H6P5 420 aa17.47■□□□□ 0.39
CCDC28A-202ENST00000611852 NLRC4Q9NPP4 1024 aa17.47■□□□□ 0.39
CCDC28A-202ENST00000611852 A0A1W2PQC6 194 aa17.47■□□□□ 0.39
CCDC28A-202ENST00000611852 XPO1O14980 1071 aaKnown RBP17.47■□□□□ 0.39
CCDC28A-202ENST00000611852 THAP12O43422 761 aa17.47■□□□□ 0.39
CCDC28A-202ENST00000611852 KIF11P52732 1056 aa17.47■□□□□ 0.39
CCDC28A-202ENST00000611852 PTK2Q05397 1052 aa17.47■□□□□ 0.39
CCDC28A-202ENST00000611852 TXNDC8Q6A555 127 aa17.47■□□□□ 0.39
CCDC28A-202ENST00000611852 ZSCAN18Q8TBC5 510 aaPredicted RBP17.47■□□□□ 0.39
CCDC28A-202ENST00000611852 FGF14Q92915 247 aa17.47■□□□□ 0.39
CCDC28A-202ENST00000611852 SMARCD2Q92925 531 aa17.47■□□□□ 0.39
CCDC28A-202ENST00000611852 FBXO44Q9H4M3 255 aa17.47■□□□□ 0.39
CCDC28A-202ENST00000611852 TRPM5Q9NZQ8 1165 aa17.47■□□□□ 0.39
CCDC28A-202ENST00000611852 IGSF9Q9P2J2 1179 aa17.47■□□□□ 0.39
CCDC28A-202ENST00000611852 ZMYM5Q9UJ78 669 aa17.47■□□□□ 0.39
CCDC28A-202ENST00000611852 NUMBLQ9Y6R0 609 aa17.47■□□□□ 0.39
CCDC28A-202ENST00000611852 ANAPC1Q9H1A4 1944 aa17.46■□□□□ 0.39
CCDC28A-202ENST00000611852 ZNF840PA6NDX5 716 aa17.46■□□□□ 0.39
CCDC28A-202ENST00000611852 SOBPA7XYQ1 873 aa17.46■□□□□ 0.39
CCDC28A-202ENST00000611852 M0QYV0 167 aa17.46■□□□□ 0.39
CCDC28A-202ENST00000611852 MED7O43513 233 aa17.46■□□□□ 0.39
CCDC28A-202ENST00000611852 SETSIPP0DME0 302 aa17.46■□□□□ 0.39
CCDC28A-202ENST00000611852 DDX6P26196 483 aaKnown RBP eCLIP17.46■□□□□ 0.39
CCDC28A-202ENST00000611852 PLA2G4AP47712 749 aa17.46■□□□□ 0.39
CCDC28A-202ENST00000611852 PPP3CCP48454 512 aa17.46■□□□□ 0.39
CCDC28A-202ENST00000611852 UBASH3AP57075 661 aa17.46■□□□□ 0.39
CCDC28A-202ENST00000611852 JAM2P57087 298 aa17.46■□□□□ 0.39
CCDC28A-202ENST00000611852 MEA1Q16626 185 aa17.46■□□□□ 0.39
CCDC28A-202ENST00000611852 RAB41Q5JT25 222 aa17.46■□□□□ 0.39
CCDC28A-202ENST00000611852 MTSS1LQ765P7 747 aa17.46■□□□□ 0.39
CCDC28A-202ENST00000611852 SLC47A2Q86VL8 602 aa17.46■□□□□ 0.39
CCDC28A-202ENST00000611852 MON1AQ86VX9 555 aa17.46■□□□□ 0.39
CCDC28A-202ENST00000611852 MAB21L3Q8N8X9 362 aa17.46■□□□□ 0.39
CCDC28A-202ENST00000611852 SLC35F5Q8WV83 523 aa17.46■□□□□ 0.39
CCDC28A-202ENST00000611852 RSAD2Q8WXG1 361 aa17.46■□□□□ 0.39
CCDC28A-202ENST00000611852 OVCA2Q8WZ82 227 aa17.46■□□□□ 0.39
CCDC28A-202ENST00000611852 SECISBP2LQ93073 1101 aaKnown RBP17.46■□□□□ 0.39
CCDC28A-202ENST00000611852 FBXO32Q969P5 355 aa17.46■□□□□ 0.39
CCDC28A-202ENST00000611852 NXPE3Q969Y0 559 aa17.46■□□□□ 0.39
CCDC28A-202ENST00000611852 MUTYHQ9UIF7 546 aa17.46■□□□□ 0.39
CCDC28A-202ENST00000611852 USP3Q9Y6I4 520 aa17.46■□□□□ 0.39
CCDC28A-202ENST00000611852 NCANO14594 1321 aa17.45■□□□□ 0.38
CCDC28A-202ENST00000611852 CFHP08603 1231 aa17.45■□□□□ 0.38
CCDC28A-202ENST00000611852 FCARP24071 287 aa17.45■□□□□ 0.38
CCDC28A-202ENST00000611852 BPIFB4P59827 614 aa17.45■□□□□ 0.38
CCDC28A-202ENST00000611852 ARID3BQ8IVW6 561 aaPredicted RBP17.45■□□□□ 0.38
CCDC28A-202ENST00000611852 CMTM8Q8IZV2 173 aa17.45■□□□□ 0.38
CCDC28A-202ENST00000611852 PDZD8Q8NEN9 1154 aa17.45■□□□□ 0.38
CCDC28A-202ENST00000611852 KHSRPQ92945 711 aaKnown RBP eCLIP17.45■□□□□ 0.386e-7■■■■□ 21.8
CCDC28A-202ENST00000611852 SPAG5Q96R06 1193 aa17.45■□□□□ 0.38
CCDC28A-202ENST00000611852 RPP25Q9BUL9 199 aaKnown RBP17.45■□□□□ 0.38
CCDC28A-202ENST00000611852 TRPV4Q9HBA0 871 aa17.45■□□□□ 0.38
CCDC28A-202ENST00000611852 GMIPQ9P107 970 aa17.45■□□□□ 0.38
CCDC28A-202ENST00000611852 CHORDC1Q9UHD1 332 aaPredicted RBP17.45■□□□□ 0.38
CCDC28A-202ENST00000611852 SCML2Q9UQR0 700 aa17.45■□□□□ 0.38
CCDC28A-202ENST00000611852 C2orf78A6NCI8 922 aa17.44■□□□□ 0.38
CCDC28A-202ENST00000611852 ZDHHC11BP0C7U3 371 aa17.44■□□□□ 0.38
CCDC28A-202ENST00000611852 WEE1P30291 646 aa17.44■□□□□ 0.38
CCDC28A-202ENST00000611852 GPD2P43304 727 aa17.44■□□□□ 0.38
CCDC28A-202ENST00000611852 SNX30Q5VWJ9 437 aa17.44■□□□□ 0.38
CCDC28A-202ENST00000611852 TANGO2Q6ICL3 276 aa17.44■□□□□ 0.38
CCDC28A-202ENST00000611852 DENND1BQ6P3S1 775 aa17.44■□□□□ 0.38
CCDC28A-202ENST00000611852 KCTD13Q8WZ19 329 aa17.44■□□□□ 0.38
CCDC28A-202ENST00000611852 ZFP14Q9HCL3 533 aa17.44■□□□□ 0.38
CCDC28A-202ENST00000611852 IFNKQ9P0W0 207 aa17.44■□□□□ 0.38
CCDC28A-202ENST00000611852 SORCS3Q9UPU3 1222 aa17.44■□□□□ 0.38
CCDC28A-202ENST00000611852 TNFRSF10AO00220 468 aa17.43■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms