RNA–Protein interactions for RNA: ENST00000599833.1

SHKBP1-221, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 761 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-221ENST00000599833 SOBPA7XYQ1 873 aa20.63■□□□□ 0.89
SHKBP1-221ENST00000599833 TULP2O00295 520 aa20.63■□□□□ 0.89
SHKBP1-221ENST00000599833 GABBR2O75899 941 aa20.63■□□□□ 0.89
SHKBP1-221ENST00000599833 OLFM2O95897 454 aa20.63■□□□□ 0.89
SHKBP1-221ENST00000599833 VDRP11473 427 aa20.63■□□□□ 0.89
SHKBP1-221ENST00000599833 TAF10Q12962 218 aa20.63■□□□□ 0.89
SHKBP1-221ENST00000599833 TAF12Q16514 161 aa20.63■□□□□ 0.89
SHKBP1-221ENST00000599833 RAB41Q5JT25 222 aa20.63■□□□□ 0.89
SHKBP1-221ENST00000599833 IER5LQ5T953 404 aa20.63■□□□□ 0.89
SHKBP1-221ENST00000599833 KLHDC7AQ5VTJ3 777 aa20.63■□□□□ 0.89
SHKBP1-221ENST00000599833 SNX30Q5VWJ9 437 aa20.63■□□□□ 0.89
SHKBP1-221ENST00000599833 ENOSF1Q7L5Y1 443 aa20.63■□□□□ 0.89
SHKBP1-221ENST00000599833 ARID3BQ8IVW6 561 aaPredicted RBP20.63■□□□□ 0.89
SHKBP1-221ENST00000599833 UBALD2Q8IYN6 164 aa20.63■□□□□ 0.89
SHKBP1-221ENST00000599833 SMG9Q9H0W8 520 aaKnown RBP20.63■□□□□ 0.89
SHKBP1-221ENST00000599833 USP3Q9Y6I4 520 aa20.63■□□□□ 0.89
SHKBP1-221ENST00000599833 C2orf78A6NCI8 922 aa20.62■□□□□ 0.89
SHKBP1-221ENST00000599833 LGALS16A8MUM7 142 aa20.62■□□□□ 0.89
SHKBP1-221ENST00000599833 EPHB6O15197 1021 aa20.62■□□□□ 0.89
SHKBP1-221ENST00000599833 BRD2P25440 801 aaKnown RBP20.62■□□□□ 0.89
SHKBP1-221ENST00000599833 DDX6P26196 483 aaKnown RBP eCLIP20.62■□□□□ 0.89
SHKBP1-221ENST00000599833 KIF11P52732 1056 aa20.62■□□□□ 0.89
SHKBP1-221ENST00000599833 ZXDBP98169 803 aa20.62■□□□□ 0.89
SHKBP1-221ENST00000599833 GOLGA7BQ2TAP0 167 aa20.62■□□□□ 0.89
SHKBP1-221ENST00000599833 SGO2Q562F6 1265 aa20.62■□□□□ 0.89
SHKBP1-221ENST00000599833 SMYD5Q6GMV2 418 aa20.62■□□□□ 0.89
SHKBP1-221ENST00000599833 LCLAT1Q6UWP7 414 aa20.62■□□□□ 0.89
SHKBP1-221ENST00000599833 GPIHBP1Q8IV16 184 aa20.62■□□□□ 0.89
SHKBP1-221ENST00000599833 CMTM8Q8IZV2 173 aa20.62■□□□□ 0.89
SHKBP1-221ENST00000599833 UBXN6Q9BZV1 441 aa20.62■□□□□ 0.89
SHKBP1-221ENST00000599833 NAT10Q9H0A0 1025 aaKnown RBP20.62■□□□□ 0.89
SHKBP1-221ENST00000599833 CBX8Q9HC52 389 aa20.62■□□□□ 0.89
SHKBP1-221ENST00000599833 PLCB1Q9NQ66 1216 aa20.62■□□□□ 0.89
SHKBP1-221ENST00000599833 SLC2A4RGQ9NR83 387 aa20.62■□□□□ 0.89
SHKBP1-221ENST00000599833 COMMD8Q9NX08 183 aa20.62■□□□□ 0.89
SHKBP1-221ENST00000599833 DNAJC12Q9UKB3 198 aa20.62■□□□□ 0.89
SHKBP1-221ENST00000599833 KIAA1257Q9ULG3 409 aa20.62■□□□□ 0.89
SHKBP1-221ENST00000599833 WDR3Q9UNX4 943 aaKnown RBP eCLIP20.62■□□□□ 0.89
SHKBP1-221ENST00000599833 CCL26Q9Y258 94 aa20.62■□□□□ 0.89
SHKBP1-221ENST00000599833 FHOD1Q9Y613 1164 aa20.62■□□□□ 0.89
SHKBP1-221ENST00000599833 ARNTLO00327 626 aa20.61■□□□□ 0.89
SHKBP1-221ENST00000599833 RTN3O95197 1032 aaPredicted RBP20.61■□□□□ 0.89
SHKBP1-221ENST00000599833 OAS1P00973 400 aaKnown RBP20.61■□□□□ 0.89
SHKBP1-221ENST00000599833 PNMA6AP0CW24 399 aaPredicted RBP20.61■□□□□ 0.89
SHKBP1-221ENST00000599833 SRFP11831 508 aa20.61■□□□□ 0.89
SHKBP1-221ENST00000599833 MFAP3P55082 362 aa20.61■□□□□ 0.89
SHKBP1-221ENST00000599833 PDE4CQ08493 712 aa20.61■□□□□ 0.89
SHKBP1-221ENST00000599833 SIGLEC14Q08ET2 396 aa20.61■□□□□ 0.89
SHKBP1-221ENST00000599833 TRIM67Q6ZTA4 783 aa20.61■□□□□ 0.89
SHKBP1-221ENST00000599833 BHLHA9Q7RTU4 235 aa20.61■□□□□ 0.89
SHKBP1-221ENST00000599833 MAB21L3Q8N8X9 362 aa20.61■□□□□ 0.89
SHKBP1-221ENST00000599833 OVCA2Q8WZ82 227 aa20.61■□□□□ 0.89
SHKBP1-221ENST00000599833 USP13Q92995 863 aaPredicted RBP20.61■□□□□ 0.89
SHKBP1-221ENST00000599833 CYP2S1Q96SQ9 504 aa20.61■□□□□ 0.89
SHKBP1-221ENST00000599833 ZFP14Q9HCL3 533 aa20.61■□□□□ 0.89
SHKBP1-221ENST00000599833 TICRRQ7Z2Z1 1910 aa20.61■□□□□ 0.89
SHKBP1-221ENST00000599833 ZNF318Q5VUA4 2279 aa20.6■□□□□ 0.89
SHKBP1-221ENST00000599833 SHISA7A6NL88 538 aa20.6■□□□□ 0.89
SHKBP1-221ENST00000599833 HEPACAM2A8MVW5 462 aa20.6■□□□□ 0.89
SHKBP1-221ENST00000599833 CFHP08603 1231 aa20.6■□□□□ 0.89
SHKBP1-221ENST00000599833 CD19P15391 556 aa20.6■□□□□ 0.89
SHKBP1-221ENST00000599833 YWHAQP27348 245 aa20.6■□□□□ 0.89
SHKBP1-221ENST00000599833 GPC5P78333 572 aa20.6■□□□□ 0.89
SHKBP1-221ENST00000599833 FCHO2Q0JRZ9 810 aa20.6■□□□□ 0.89
SHKBP1-221ENST00000599833 CNGA2Q16280 664 aa20.6■□□□□ 0.89
SHKBP1-221ENST00000599833 ARHGAP44Q17R89 818 aa20.6■□□□□ 0.89
SHKBP1-221ENST00000599833 ARHGAP15Q53QZ3 475 aa20.6■□□□□ 0.89
SHKBP1-221ENST00000599833 PIGZQ86VD9 579 aa20.6■□□□□ 0.89
SHKBP1-221ENST00000599833 MRPS31Q92665 395 aaKnown RBP20.6■□□□□ 0.89
SHKBP1-221ENST00000599833 FAM81BQ96LP2 452 aa20.6■□□□□ 0.89
SHKBP1-221ENST00000599833 GCNAQ96QF7 691 aa20.6■□□□□ 0.89
SHKBP1-221ENST00000599833 LSM14BQ9BX40 385 aaKnown RBP20.6■□□□□ 0.89
SHKBP1-221ENST00000599833 RNF38Q9H0F5 515 aa20.6■□□□□ 0.89
SHKBP1-221ENST00000599833 SLITRK6Q9H5Y7 841 aa20.6■□□□□ 0.89
SHKBP1-221ENST00000599833 NMUR1Q9HB89 426 aa20.6■□□□□ 0.89
SHKBP1-221ENST00000599833 OSER1Q9NX31 292 aa20.6■□□□□ 0.89
SHKBP1-221ENST00000599833 EHD2Q9NZN4 543 aa20.6■□□□□ 0.89
SHKBP1-221ENST00000599833 GMIPQ9P107 970 aa20.6■□□□□ 0.89
SHKBP1-221ENST00000599833 ZMYM5Q9UJ78 669 aa20.6■□□□□ 0.89
SHKBP1-221ENST00000599833 SCML2Q9UQR0 700 aa20.6■□□□□ 0.89
SHKBP1-221ENST00000599833 ZDBF2Q9HCK1 2354 aa20.6■□□□□ 0.89
SHKBP1-221ENST00000599833 FAM86C2PA6NEL3 165 aa20.59■□□□□ 0.89
SHKBP1-221ENST00000599833 FOXN3O00409 490 aaPredicted RBP20.59■□□□□ 0.89
SHKBP1-221ENST00000599833 XPO1O14980 1071 aaKnown RBP20.59■□□□□ 0.89
SHKBP1-221ENST00000599833 GPR37L1O60883 481 aa20.59■□□□□ 0.89
SHKBP1-221ENST00000599833 UCHL3P15374 230 aa20.59■□□□□ 0.89
SHKBP1-221ENST00000599833 CLCN1P35523 988 aa20.59■□□□□ 0.89
SHKBP1-221ENST00000599833 BCAT1P54687 386 aa20.59■□□□□ 0.89
SHKBP1-221ENST00000599833 IFRD2Q12894 506 aaPredicted RBP20.59■□□□□ 0.89
SHKBP1-221ENST00000599833 GRM2Q14416 872 aa20.59■□□□□ 0.89
SHKBP1-221ENST00000599833 ZNF268Q14587 947 aaPredicted RBP20.59■□□□□ 0.89
SHKBP1-221ENST00000599833 SCD5Q86SK9 330 aa20.59■□□□□ 0.89
SHKBP1-221ENST00000599833 LUZP1Q86V48 1076 aa20.59■□□□□ 0.89
SHKBP1-221ENST00000599833 MFSD6LQ8IWD5 586 aa20.59■□□□□ 0.89
SHKBP1-221ENST00000599833 FAM71AQ8IYT1 594 aa20.59■□□□□ 0.89
SHKBP1-221ENST00000599833 UBA3Q8TBC4 463 aa20.59■□□□□ 0.89
SHKBP1-221ENST00000599833 SLC35F5Q8WV83 523 aa20.59■□□□□ 0.89
SHKBP1-221ENST00000599833 FBXO32Q969P5 355 aa20.59■□□□□ 0.89
SHKBP1-221ENST00000599833 ERGIC2Q96RQ1 377 aa20.59■□□□□ 0.89
SHKBP1-221ENST00000599833 OBP2AQ9NY56 170 aa20.59■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms