RNA–Protein interactions for RNA: ENST00000593564.2

LSM4-202, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 656 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-202ENST00000593564 BLZF1Q9H2G9 400 aa25.47■■□□□ 1.67
LSM4-202ENST00000593564 CPQQ9Y646 472 aa25.47■■□□□ 1.67
LSM4-202ENST00000593564 EML5Q05BV3 1969 aa25.47■■□□□ 1.67
LSM4-202ENST00000593564 A8MXQ7 604 aa25.46■■□□□ 1.67
LSM4-202ENST00000593564 MYL6P60660 151 aa25.46■■□□□ 1.67
LSM4-202ENST00000593564 KNOP1Q1ED39 458 aaKnown RBP25.46■■□□□ 1.67
LSM4-202ENST00000593564 FILIP1Q7Z7B0 1213 aa25.46■■□□□ 1.67
LSM4-202ENST00000593564 SLITRK1Q96PX8 696 aa25.46■■□□□ 1.67
LSM4-202ENST00000593564 B3GNT5Q9BYG0 378 aa25.46■■□□□ 1.67
LSM4-202ENST00000593564 DUSP15Q9H1R2 295 aaPredicted RBP25.46■■□□□ 1.67
LSM4-202ENST00000593564 SLC39A2Q9NP94 309 aa25.46■■□□□ 1.67
LSM4-202ENST00000593564 VPS45Q9NRW7 570 aa25.46■■□□□ 1.67
LSM4-202ENST00000593564 RXFP3Q9NSD7 469 aa25.46■■□□□ 1.67
LSM4-202ENST00000593564 NXF1Q9UBU9 619 aaKnown RBP25.46■■□□□ 1.67
LSM4-202ENST00000593564 KIAA1549LQ6ZVL6 1849 aa25.45■■□□□ 1.66
LSM4-202ENST00000593564 K7EQS6 105 aa25.45■■□□□ 1.66
LSM4-202ENST00000593564 SLC9A3R1O14745 358 aaPredicted RBP25.45■■□□□ 1.66
LSM4-202ENST00000593564 CYP17A1P05093 508 aa25.45■■□□□ 1.66
LSM4-202ENST00000593564 PDIA4P13667 645 aaKnown RBP25.45■■□□□ 1.66
LSM4-202ENST00000593564 ELF2Q15723 593 aa25.45■■□□□ 1.66
LSM4-202ENST00000593564 FOXD4L5Q5VV16 416 aaPredicted RBP25.45■■□□□ 1.66
LSM4-202ENST00000593564 ADGRG2Q8IZP9 1017 aa25.45■■□□□ 1.66
LSM4-202ENST00000593564 TSTD1Q8NFU3 115 aa25.45■■□□□ 1.66
LSM4-202ENST00000593564 FOXD4L4Q8WXT5 416 aaPredicted RBP25.45■■□□□ 1.66
LSM4-202ENST00000593564 VRTNQ9H8Y1 702 aa25.45■■□□□ 1.66
LSM4-202ENST00000593564 SMPD4Q9NXE4 827 aa25.45■■□□□ 1.66
LSM4-202ENST00000593564 FAM13BQ9NYF5 915 aa25.45■■□□□ 1.66
LSM4-202ENST00000593564 CHD8Q9HCK8 2581 aa25.44■■□□□ 1.66
LSM4-202ENST00000593564 TM4SF5O14894 197 aa25.44■■□□□ 1.66
LSM4-202ENST00000593564 EXOC3O60645 756 aa25.44■■□□□ 1.66
LSM4-202ENST00000593564 RHOBTB1O94844 696 aa25.44■■□□□ 1.66
LSM4-202ENST00000593564 ABL1P00519 1130 aa25.44■■□□□ 1.66
LSM4-202ENST00000593564 CUL4BQ13620 913 aa25.44■■□□□ 1.66
LSM4-202ENST00000593564 DDX42Q86XP3 938 aaKnown RBP eCLIP25.44■■□□□ 1.66
LSM4-202ENST00000593564 GOLGA5Q8TBA6 731 aa25.44■■□□□ 1.66
LSM4-202ENST00000593564 SNX21Q969T3 373 aa25.44■■□□□ 1.66
LSM4-202ENST00000593564 PCDHA7Q9UN72 937 aa25.44■■□□□ 1.66
LSM4-202ENST00000593564 MYO16Q9Y6X6 1858 aa25.44■■□□□ 1.66
LSM4-202ENST00000593564 CLDN5O00501 218 aa25.43■■□□□ 1.66
LSM4-202ENST00000593564 DCLK1O15075 740 aa25.43■■□□□ 1.66
LSM4-202ENST00000593564 PHACTR2O75167 634 aa25.43■■□□□ 1.66
LSM4-202ENST00000593564 YWHAQP27348 245 aa25.43■■□□□ 1.66
LSM4-202ENST00000593564 CASP4P49662 377 aa25.43■■□□□ 1.66
LSM4-202ENST00000593564 DGKEP52429 567 aa25.43■■□□□ 1.66
LSM4-202ENST00000593564 AP3M2P53677 418 aa25.43■■□□□ 1.66
LSM4-202ENST00000593564 SEC13P55735 322 aa25.43■■□□□ 1.66
LSM4-202ENST00000593564 DHCR24Q15392 516 aa25.43■■□□□ 1.66
LSM4-202ENST00000593564 C2orf27AQ580R0 203 aa25.43■■□□□ 1.66
LSM4-202ENST00000593564 STPG1Q5TH74 334 aa25.43■■□□□ 1.66
LSM4-202ENST00000593564 RESP18Q5W5W9 173 aa25.43■■□□□ 1.66
LSM4-202ENST00000593564 NUP93Q8N1F7 819 aa25.43■■□□□ 1.66
LSM4-202ENST00000593564 PDZD8Q8NEN9 1154 aa25.43■■□□□ 1.66
LSM4-202ENST00000593564 PLEKHO2Q8TD55 490 aa25.43■■□□□ 1.66
LSM4-202ENST00000593564 OVCA2Q8WZ82 227 aa25.43■■□□□ 1.66
LSM4-202ENST00000593564 SMOC1Q9H4F8 434 aa25.43■■□□□ 1.66
LSM4-202ENST00000593564 CFAP97Q9P2B7 532 aa25.43■■□□□ 1.66
LSM4-202ENST00000593564 MMP17Q9ULZ9 603 aa25.43■■□□□ 1.66
LSM4-202ENST00000593564 RTN3O95197 1032 aaPredicted RBP25.42■■□□□ 1.66
LSM4-202ENST00000593564 ZSCAN22P10073 491 aaPredicted RBP25.42■■□□□ 1.66
LSM4-202ENST00000593564 AFMP43652 599 aa25.42■■□□□ 1.66
LSM4-202ENST00000593564 ME1P48163 572 aa25.42■■□□□ 1.66
LSM4-202ENST00000593564 CLDN10P78369 228 aa25.42■■□□□ 1.66
LSM4-202ENST00000593564 C11orf74Q86VG3 221 aa25.42■■□□□ 1.66
LSM4-202ENST00000593564 RASSF3Q86WH2 238 aa25.42■■□□□ 1.66
LSM4-202ENST00000593564 PARD3BQ8TEW8 1205 aa25.42■■□□□ 1.66
LSM4-202ENST00000593564 SMYD3Q9H7B4 428 aa25.42■■□□□ 1.66
LSM4-202ENST00000593564 ATP8B3O60423 1300 aa25.41■■□□□ 1.66
LSM4-202ENST00000593564 F13A1P00488 732 aa25.41■■□□□ 1.66
LSM4-202ENST00000593564 MBL2P11226 248 aaPredicted RBP25.41■■□□□ 1.66
LSM4-202ENST00000593564 EIF2DP41214 584 aaKnown RBP25.41■■□□□ 1.66
LSM4-202ENST00000593564 MRPS21P82921 87 aaKnown RBP25.41■■□□□ 1.66
LSM4-202ENST00000593564 IFRD2Q12894 506 aaPredicted RBP25.41■■□□□ 1.66
LSM4-202ENST00000593564 BIRC3Q13489 604 aa25.41■■□□□ 1.66
LSM4-202ENST00000593564 ZNF699Q32M78 642 aa25.41■■□□□ 1.66
LSM4-202ENST00000593564 FOXD4L6Q3SYB3 417 aaPredicted RBP25.41■■□□□ 1.66
LSM4-202ENST00000593564 USP39Q53GS9 565 aaKnown RBP25.41■■□□□ 1.66
LSM4-202ENST00000593564 ATL3Q6DD88 541 aa25.41■■□□□ 1.66
LSM4-202ENST00000593564 FOXD4L3Q6VB84 417 aaPredicted RBP25.41■■□□□ 1.66
LSM4-202ENST00000593564 FBXO32Q969P5 355 aa25.41■■□□□ 1.66
LSM4-202ENST00000593564 CNOT6LQ96LI5 555 aaKnown RBP25.41■■□□□ 1.66
LSM4-202ENST00000593564 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP25.4■■□□□ 1.66
LSM4-202ENST00000593564 BCLAF3A2AJT9 711 aaKnown RBP25.4■■□□□ 1.66
LSM4-202ENST00000593564 LRRIQ3A6PVS8 624 aaPredicted RBP25.4■■□□□ 1.66
LSM4-202ENST00000593564 ADH1CP00326 375 aa25.4■■□□□ 1.66
LSM4-202ENST00000593564 CDH8P55286 799 aa25.4■■□□□ 1.66
LSM4-202ENST00000593564 NCOA4Q13772 614 aa25.4■■□□□ 1.66
LSM4-202ENST00000593564 ZNF667Q5HYK9 610 aa25.4■■□□□ 1.66
LSM4-202ENST00000593564 RHBDF2Q6PJF5 856 aa25.4■■□□□ 1.66
LSM4-202ENST00000593564 FAM35AQ86V20 835 aa25.4■■□□□ 1.66
LSM4-202ENST00000593564 CEP57L1Q8IYX8 460 aa25.4■■□□□ 1.66
LSM4-202ENST00000593564 TMEM174Q8WUU8 243 aa25.4■■□□□ 1.66
LSM4-202ENST00000593564 TNIP3Q96KP6 325 aa25.4■■□□□ 1.66
LSM4-202ENST00000593564 KCNK16Q96T55 309 aa25.4■■□□□ 1.66
LSM4-202ENST00000593564 PNKPQ96T60 521 aa25.4■■□□□ 1.66
LSM4-202ENST00000593564 DMAC2Q9NW81 257 aa25.4■■□□□ 1.66
LSM4-202ENST00000593564 TBC1D14Q9P2M4 693 aa25.4■■□□□ 1.66
LSM4-202ENST00000593564 KMT2BQ9UMN6 2715 aaPredicted RBP25.4■■□□□ 1.66
LSM4-202ENST00000593564 LAMA1P25391 3075 aa25.4■■□□□ 1.66
LSM4-202ENST00000593564 E2F8A0AVK6 867 aa25.39■■□□□ 1.66
LSM4-202ENST00000593564 ANTXRLA6NF34 631 aa25.39■■□□□ 1.66
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms