RNA–Protein interactions for RNA: ENST00000581708.5

CDK5RAP3-222, Transcript of CDK5 regulatory subunit associated protein 3, human

TSL 4

Gene CDK5RAP3, Length 543 nt, Biotype processed transcript.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CDK5RAP3-222	ENST00000581708	LMAN1L	Q9HAT1	526 aa		13.36	□□□□□ -0.27
CDK5RAP3-222	ENST00000581708	TRPC7	Q9HCX4	862 aa		13.36	□□□□□ -0.27
CDK5RAP3-222	ENST00000581708	RAB20	Q9NX57	234 aa		13.36	□□□□□ -0.27
CDK5RAP3-222	ENST00000581708	CHMP5	Q9NZZ3	219 aa		13.36	□□□□□ -0.27
CDK5RAP3-222	ENST00000581708	ARMCX3	Q9UH62	379 aa	Predicted RBP	13.36	□□□□□ -0.27
CDK5RAP3-222	ENST00000581708	NDRG2	Q9UN36	371 aa	Known RBP	13.36	□□□□□ -0.27
CDK5RAP3-222	ENST00000581708	CCL26	Q9Y258	94 aa		13.36	□□□□□ -0.27
CDK5RAP3-222	ENST00000581708	COQ4	Q9Y3A0	265 aa		13.36	□□□□□ -0.27
CDK5RAP3-222	ENST00000581708	PCDHGA2	Q9Y5H1	932 aa		13.36	□□□□□ -0.27
CDK5RAP3-222	ENST00000581708	FAM186A	A6NE01	2351 aa		13.35	□□□□□ -0.27
CDK5RAP3-222	ENST00000581708	BICDL2	A1A5D9	508 aa		13.35	□□□□□ -0.27
CDK5RAP3-222	ENST00000581708	PRR23A	A6NEV1	266 aa		13.35	□□□□□ -0.27
CDK5RAP3-222	ENST00000581708	SLC9A3R1	O14745	358 aa	Predicted RBP	13.35	□□□□□ -0.27
CDK5RAP3-222	ENST00000581708	TNFRSF10B	O14763	440 aa		13.35	□□□□□ -0.27
CDK5RAP3-222	ENST00000581708	AP1G2	O75843	785 aa		13.35	□□□□□ -0.27
CDK5RAP3-222	ENST00000581708	PAPSS2	O95340	614 aa	Predicted RBP	13.35	□□□□□ -0.27
CDK5RAP3-222	ENST00000581708	RAP1GAP	P47736	663 aa		13.35	□□□□□ -0.27
CDK5RAP3-222	ENST00000581708	USP46	P62068	366 aa		13.35	□□□□□ -0.27
CDK5RAP3-222	ENST00000581708	TAF10	Q12962	218 aa		13.35	□□□□□ -0.27
CDK5RAP3-222	ENST00000581708	NR1H3	Q13133	447 aa		13.35	□□□□□ -0.27
CDK5RAP3-222	ENST00000581708	FILIP1	Q7Z7B0	1213 aa		13.35	□□□□□ -0.27
CDK5RAP3-222	ENST00000581708	SPEM1	Q8N4L4	309 aa		13.35	□□□□□ -0.27
CDK5RAP3-222	ENST00000581708	CPA6	Q8N4T0	437 aa		13.35	□□□□□ -0.27
CDK5RAP3-222	ENST00000581708	ARL14EP	Q8N8R7	260 aa	Predicted RBP	13.35	□□□□□ -0.27
CDK5RAP3-222	ENST00000581708	TRIML1	Q8N9V2	468 aa		13.35	□□□□□ -0.27
CDK5RAP3-222	ENST00000581708	ZFYVE19	Q96K21	471 aa		13.35	□□□□□ -0.27
CDK5RAP3-222	ENST00000581708	SMG9	Q9H0W8	520 aa	Known RBP	13.35	□□□□□ -0.27
CDK5RAP3-222	ENST00000581708	GTSE1	Q9NYZ3	720 aa		13.35	□□□□□ -0.27
CDK5RAP3-222	ENST00000581708	FANCM	Q8IYD8	2048 aa		13.35	□□□□□ -0.27
CDK5RAP3-222	ENST00000581708	C2orf78	A6NCI8	922 aa		13.34	□□□□□ -0.27
CDK5RAP3-222	ENST00000581708	CLDN5	O00501	218 aa		13.34	□□□□□ -0.27
CDK5RAP3-222	ENST00000581708	TRDMT1	O14717	391 aa	Known RBP	13.34	□□□□□ -0.27
CDK5RAP3-222	ENST00000581708	CILP	O75339	1184 aa		13.34	□□□□□ -0.27
CDK5RAP3-222	ENST00000581708	OAS1	P00973	400 aa	Known RBP	13.34	□□□□□ -0.27
CDK5RAP3-222	ENST00000581708	FAM200B	P0CF97	657 aa		13.34	□□□□□ -0.27
CDK5RAP3-222	ENST00000581708	IFNAR2	P48551	515 aa		13.34	□□□□□ -0.27
CDK5RAP3-222	ENST00000581708	CACNA2D1	P54289	1103 aa		13.34	□□□□□ -0.27
CDK5RAP3-222	ENST00000581708	UBE2H	P62256	183 aa		13.34	□□□□□ -0.27
CDK5RAP3-222	ENST00000581708	MTAP	Q13126	283 aa		13.34	□□□□□ -0.27
CDK5RAP3-222	ENST00000581708	CCIN	Q13939	588 aa		13.34	□□□□□ -0.27
CDK5RAP3-222	ENST00000581708	SPOPL	Q6IQ16	392 aa		13.34	□□□□□ -0.27
CDK5RAP3-222	ENST00000581708	GPIHBP1	Q8IV16	184 aa		13.34	□□□□□ -0.27
CDK5RAP3-222	ENST00000581708	ZBTB44	Q8NCP5	570 aa		13.34	□□□□□ -0.27
CDK5RAP3-222	ENST00000581708	CCDC26	Q8TAB7	109 aa		13.34	□□□□□ -0.27
CDK5RAP3-222	ENST00000581708	SLC2A14	Q8TDB8	520 aa		13.34	□□□□□ -0.27
CDK5RAP3-222	ENST00000581708	SH3RF2	Q8TEC5	729 aa		13.34	□□□□□ -0.27
CDK5RAP3-222	ENST00000581708	FBXO32	Q969P5	355 aa		13.34	□□□□□ -0.27
CDK5RAP3-222	ENST00000581708	SLC22A12	Q96S37	553 aa		13.34	□□□□□ -0.27
CDK5RAP3-222	ENST00000581708	CYP2S1	Q96SQ9	504 aa		13.34	□□□□□ -0.27
CDK5RAP3-222	ENST00000581708	APOBEC3G	Q9HC16	384 aa	Known RBP	13.34	□□□□□ -0.27
CDK5RAP3-222	ENST00000581708	HPS4	Q9NQG7	708 aa		13.34	□□□□□ -0.27
CDK5RAP3-222	ENST00000581708	KRT82	Q9NSB4	513 aa		13.34	□□□□□ -0.27
CDK5RAP3-222	ENST00000581708	TMEM30A	Q9NV96	361 aa		13.34	□□□□□ -0.27
CDK5RAP3-222	ENST00000581708	ZSCAN32	Q9NX65	697 aa		13.34	□□□□□ -0.27
CDK5RAP3-222	ENST00000581708	DUS2	Q9NX74	493 aa	Known RBP	13.34	□□□□□ -0.27
CDK5RAP3-222	ENST00000581708	MAN1B1	Q9UKM7	699 aa		13.34	□□□□□ -0.27
CDK5RAP3-222	ENST00000581708	PTPRZ1	P23471	2315 aa	Predicted RBP	13.34	□□□□□ -0.27
CDK5RAP3-222	ENST00000581708	USP34	Q70CQ2	3546 aa		13.34	□□□□□ -0.27
CDK5RAP3-222	ENST00000581708	GVINP1	Q7Z2Y8	2422 aa		13.33	□□□□□ -0.27
CDK5RAP3-222	ENST00000581708	HELZ	P42694	1942 aa	Known RBP	13.33	□□□□□ -0.28
CDK5RAP3-222	ENST00000581708	P4HA2	O15460	535 aa		13.33	□□□□□ -0.28
CDK5RAP3-222	ENST00000581708	NFATC1	O95644	943 aa		13.33	□□□□□ -0.28
CDK5RAP3-222	ENST00000581708	GNA14	O95837	355 aa		13.33	□□□□□ -0.28
CDK5RAP3-222	ENST00000581708	LMNA	P02545	664 aa	Known RBP	13.33	□□□□□ -0.28
CDK5RAP3-222	ENST00000581708	ZDHHC11B	P0C7U3	371 aa		13.33	□□□□□ -0.28
CDK5RAP3-222	ENST00000581708	HOXA6	P31267	233 aa		13.33	□□□□□ -0.28
CDK5RAP3-222	ENST00000581708	SLC5A3	P53794	718 aa		13.33	□□□□□ -0.28
CDK5RAP3-222	ENST00000581708	PMS1	P54277	932 aa	Known RBP	13.33	□□□□□ -0.28
CDK5RAP3-222	ENST00000581708	YWHAE	P62258	255 aa	Known RBP	13.33	□□□□□ -0.28
CDK5RAP3-222	ENST00000581708	CSTF1	Q05048	431 aa	Known RBP	13.33	□□□□□ -0.28
CDK5RAP3-222	ENST00000581708	TNK2	Q07912	1038 aa		13.33	□□□□□ -0.28
CDK5RAP3-222	ENST00000581708	CETN1	Q12798	172 aa		13.33	□□□□□ -0.28
CDK5RAP3-222	ENST00000581708	GRSF1	Q12849	480 aa	Known RBP eCLIP	13.33	□□□□□ -0.28
CDK5RAP3-222	ENST00000581708	MORC3	Q14149	939 aa		13.33	□□□□□ -0.28
CDK5RAP3-222	ENST00000581708	FBXO43	Q4G163	708 aa		13.33	□□□□□ -0.28
CDK5RAP3-222	ENST00000581708	TMEM196	Q5HYL7	178 aa		13.33	□□□□□ -0.28
CDK5RAP3-222	ENST00000581708	TCERG1L	Q5VWI1	586 aa		13.33	□□□□□ -0.28
CDK5RAP3-222	ENST00000581708	TXNDC11	Q6PKC3	985 aa		13.33	□□□□□ -0.28
CDK5RAP3-222	ENST00000581708	ATRIP	Q8WXE1	791 aa		13.33	□□□□□ -0.28
CDK5RAP3-222	ENST00000581708	SLC35C1	Q96A29	364 aa		13.33	□□□□□ -0.28
CDK5RAP3-222	ENST00000581708	OTUB2	Q96DC9	234 aa		13.33	□□□□□ -0.28
CDK5RAP3-222	ENST00000581708	CYFIP2	Q96F07	1278 aa		13.33	□□□□□ -0.28
CDK5RAP3-222	ENST00000581708	KCNK16	Q96T55	309 aa		13.33	□□□□□ -0.28
CDK5RAP3-222	ENST00000581708	UBXN6	Q9BZV1	441 aa		13.33	□□□□□ -0.28
CDK5RAP3-222	ENST00000581708	EBF3	Q9H4W6	596 aa		13.33	□□□□□ -0.28
CDK5RAP3-222	ENST00000581708	TBC1D14	Q9P2M4	693 aa		13.33	□□□□□ -0.28
CDK5RAP3-222	ENST00000581708	COL4A3	Q01955	1670 aa		13.33	□□□□□ -0.28
CDK5RAP3-222	ENST00000581708	ATG13	O75143	517 aa		13.32	□□□□□ -0.28
CDK5RAP3-222	ENST00000581708	FGFR1OP	O95684	399 aa	Known RBP	13.32	□□□□□ -0.28
CDK5RAP3-222	ENST00000581708	DRD1	P21728	446 aa		13.32	□□□□□ -0.28
CDK5RAP3-222	ENST00000581708	CXCL12	P48061	93 aa		13.32	□□□□□ -0.28
CDK5RAP3-222	ENST00000581708	SOX9	P48436	509 aa		13.32	□□□□□ -0.28
CDK5RAP3-222	ENST00000581708	EML3	Q32P44	896 aa		13.32	□□□□□ -0.28
CDK5RAP3-222	ENST00000581708	DCAF17	Q5H9S7	520 aa	Predicted RBP	13.32	□□□□□ -0.28
CDK5RAP3-222	ENST00000581708	HECTD3	Q5T447	861 aa		13.32	□□□□□ -0.28
CDK5RAP3-222	ENST00000581708	SMYD5	Q6GMV2	418 aa		13.32	□□□□□ -0.28
CDK5RAP3-222	ENST00000581708	TTI2	Q6NXR4	508 aa		13.32	□□□□□ -0.28
CDK5RAP3-222	ENST00000581708	ASCL5	Q7RTU5	278 aa		13.32	□□□□□ -0.28
CDK5RAP3-222	ENST00000581708	ZNF276	Q8N554	614 aa		13.32	□□□□□ -0.28
CDK5RAP3-222	ENST00000581708	C12orf29	Q8N999	325 aa		13.32	□□□□□ -0.28

Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms