RNA–Protein interactions for RNA: ENST00000581570.5

SS18-219, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 571 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-219ENST00000581570 CSGALNACT2Q8N6G5 542 aa13.63□□□□□ -0.23
SS18-219ENST00000581570 LRRC52Q8N7C0 313 aa13.63□□□□□ -0.23
SS18-219ENST00000581570 PNPLA1Q8N8W4 532 aa13.63□□□□□ -0.23
SS18-219ENST00000581570 C1orf127Q8N9H9 656 aa13.63□□□□□ -0.23
SS18-219ENST00000581570 CACTINQ8WUQ7 758 aaKnown RBP13.63□□□□□ -0.23
SS18-219ENST00000581570 POMGNT1Q8WZA1 660 aa13.63□□□□□ -0.23
SS18-219ENST00000581570 SPATA17Q96L03 361 aa13.63□□□□□ -0.23
SS18-219ENST00000581570 RNF38Q9H0F5 515 aa13.63□□□□□ -0.23
SS18-219ENST00000581570 SMPD4Q9NXE4 827 aa13.63□□□□□ -0.23
SS18-219ENST00000581570 GDAP2Q9NXN4 497 aa13.63□□□□□ -0.23
SS18-219ENST00000581570 MAGEC2Q9UBF1 373 aaPredicted RBP13.63□□□□□ -0.23
SS18-219ENST00000581570 SNX9Q9Y5X1 595 aa13.63□□□□□ -0.23
SS18-219ENST00000581570 CPQQ9Y646 472 aa13.63□□□□□ -0.23
SS18-219ENST00000581570 ANK1P16157 1881 aa13.63□□□□□ -0.23
SS18-219ENST00000581570 OBSL1O75147 1896 aa13.62□□□□□ -0.23
SS18-219ENST00000581570 TBC1D3BA6NDS4 549 aa13.62□□□□□ -0.23
SS18-219ENST00000581570 GABRDO14764 452 aa13.62□□□□□ -0.23
SS18-219ENST00000581570 ATP2C2O75185 946 aa13.62□□□□□ -0.23
SS18-219ENST00000581570 TBCAO75347 108 aaKnown RBP13.62□□□□□ -0.23
SS18-219ENST00000581570 ABL1P00519 1130 aa13.62□□□□□ -0.23
SS18-219ENST00000581570 ADH5P11766 374 aa13.62□□□□□ -0.23
SS18-219ENST00000581570 GABRG2P18507 467 aa13.62□□□□□ -0.23
SS18-219ENST00000581570 PLCG1P19174 1290 aa13.62□□□□□ -0.23
SS18-219ENST00000581570 BDNFP23560 247 aa13.62□□□□□ -0.23
SS18-219ENST00000581570 USP46P62068 366 aa13.62□□□□□ -0.23
SS18-219ENST00000581570 MCM6Q14566 821 aa13.62□□□□□ -0.23
SS18-219ENST00000581570 SCARA3Q6AZY7 606 aa13.62□□□□□ -0.23
SS18-219ENST00000581570 VSTM1Q6UX27 236 aa13.62□□□□□ -0.23
SS18-219ENST00000581570 TRMT11Q7Z4G4 463 aaKnown RBP13.62□□□□□ -0.23
SS18-219ENST00000581570 ADGRF2Q8IZF7 708 aa13.62□□□□□ -0.23
SS18-219ENST00000581570 TOP6BLQ8N6T0 577 aa13.62□□□□□ -0.23
SS18-219ENST00000581570 MDM1Q8TC05 714 aa13.62□□□□□ -0.23
SS18-219ENST00000581570 CALML4Q96GE6 196 aa13.62□□□□□ -0.23
SS18-219ENST00000581570 EHD2Q9NZN4 543 aa13.62□□□□□ -0.23
SS18-219ENST00000581570 CFAP97Q9P2B7 532 aa13.62□□□□□ -0.23
SS18-219ENST00000581570 DSPP15924 2871 aaKnown RBP13.62□□□□□ -0.23
SS18-219ENST00000581570 ANKRD11Q6UB99 2663 aaPredicted RBP13.62□□□□□ -0.23
SS18-219ENST00000581570 CACNA1EQ15878 2313 aa13.62□□□□□ -0.23
SS18-219ENST00000581570 IGHV1OR15-9A0A0B4J2B8 117 aa13.61□□□□□ -0.23
SS18-219ENST00000581570 A0A1W2PQD8 194 aa13.61□□□□□ -0.23
SS18-219ENST00000581570 ZNF840PA6NDX5 716 aa13.61□□□□□ -0.23
SS18-219ENST00000581570 HAX1O00165 279 aa13.61□□□□□ -0.23
SS18-219ENST00000581570 ZBTB24O43167 697 aaPredicted RBP13.61□□□□□ -0.23
SS18-219ENST00000581570 SLC26A4O43511 780 aa13.61□□□□□ -0.23
SS18-219ENST00000581570 GJB3O75712 270 aa13.61□□□□□ -0.23
SS18-219ENST00000581570 ZIC2O95409 532 aaPredicted RBP13.61□□□□□ -0.23
SS18-219ENST00000581570 KRT19P08727 400 aa13.61□□□□□ -0.23
SS18-219ENST00000581570 ANXA13P27216 316 aa13.61□□□□□ -0.23
SS18-219ENST00000581570 ADSSP30520 456 aa13.61□□□□□ -0.23
SS18-219ENST00000581570 PPP3CCP48454 512 aa13.61□□□□□ -0.23
SS18-219ENST00000581570 WNT7BP56706 349 aa13.61□□□□□ -0.23
SS18-219ENST00000581570 GAD2Q05329 585 aa13.61□□□□□ -0.23
SS18-219ENST00000581570 PLEKHG6Q3KR16 790 aa13.61□□□□□ -0.23
SS18-219ENST00000581570 RILPL1Q5EBL4 403 aa13.61□□□□□ -0.23
SS18-219ENST00000581570 SLC41A1Q8IVJ1 513 aa13.61□□□□□ -0.23
SS18-219ENST00000581570 NAXDQ8IW45 347 aa13.61□□□□□ -0.23
SS18-219ENST00000581570 RGL4Q8IZJ4 473 aa13.61□□□□□ -0.23
SS18-219ENST00000581570 ZNF513Q8N8E2 541 aaPredicted RBP13.61□□□□□ -0.23
SS18-219ENST00000581570 TRIML1Q8N9V2 468 aa13.61□□□□□ -0.23
SS18-219ENST00000581570 KCNV2Q8TDN2 545 aa13.61□□□□□ -0.23
SS18-219ENST00000581570 MYLPFQ96A32 169 aa13.61□□□□□ -0.23
SS18-219ENST00000581570 LRIG1Q96JA1 1093 aa13.61□□□□□ -0.23
SS18-219ENST00000581570 CEP295NLQ96MC4 621 aa13.61□□□□□ -0.23
SS18-219ENST00000581570 HSPA12BQ96MM6 686 aa13.61□□□□□ -0.23
SS18-219ENST00000581570 BBC3Q96PG8 261 aaPredicted RBP13.61□□□□□ -0.23
SS18-219ENST00000581570 SYT15Q9BQS2 421 aa13.61□□□□□ -0.23
SS18-219ENST00000581570 FAM213AQ9BRX8 229 aa13.61□□□□□ -0.23
SS18-219ENST00000581570 IKZF4Q9H2S9 585 aa13.61□□□□□ -0.23
SS18-219ENST00000581570 ST6GALNAC4Q9H4F1 302 aa13.61□□□□□ -0.23
SS18-219ENST00000581570 BLOC1S4Q9NUP1 217 aa13.61□□□□□ -0.23
SS18-219ENST00000581570 CALCOCO1Q9P1Z2 691 aa13.61□□□□□ -0.23
SS18-219ENST00000581570 TBC1D14Q9P2M4 693 aa13.61□□□□□ -0.23
SS18-219ENST00000581570 APOBEC2Q9Y235 224 aaKnown RBP13.61□□□□□ -0.23
SS18-219ENST00000581570 RAXQ9Y2V3 346 aa13.61□□□□□ -0.23
SS18-219ENST00000581570 NBEAQ8NFP9 2946 aa13.61□□□□□ -0.23
SS18-219ENST00000581570 MYH11P35749 1972 aa13.61□□□□□ -0.23
SS18-219ENST00000581570 FREM2Q5SZK8 3169 aa13.6□□□□□ -0.23
SS18-219ENST00000581570 ZNF217O75362 1048 aa13.6□□□□□ -0.23
SS18-219ENST00000581570 OLFM2O95897 454 aa13.6□□□□□ -0.23
SS18-219ENST00000581570 HOXB2P14652 356 aa13.6□□□□□ -0.23
SS18-219ENST00000581570 LMO2P25791 158 aa13.6□□□□□ -0.23
SS18-219ENST00000581570 UBA7P41226 1012 aa13.6□□□□□ -0.23
SS18-219ENST00000581570 VASPP50552 380 aaPredicted RBP13.6□□□□□ -0.23
SS18-219ENST00000581570 PSMC1P62191 440 aaKnown RBP13.6□□□□□ -0.23
SS18-219ENST00000581570 RBP5P82980 135 aa13.6□□□□□ -0.23
SS18-219ENST00000581570 SOWAHAQ2M3V2 549 aa13.6□□□□□ -0.23
SS18-219ENST00000581570 PREPLQ4J6C6 727 aaPredicted RBP13.6□□□□□ -0.23
SS18-219ENST00000581570 LY6G5CQ5SRR4 150 aa13.6□□□□□ -0.23
SS18-219ENST00000581570 BTBD8Q5XKL5 378 aa13.6□□□□□ -0.23
SS18-219ENST00000581570 ARL6IP4Q66PJ3 421 aaKnown RBP13.6□□□□□ -0.23
SS18-219ENST00000581570 MCTP1Q6DN14 999 aa13.6□□□□□ -0.23
SS18-219ENST00000581570 NUDT18Q6ZVK8 323 aa13.6□□□□□ -0.23
SS18-219ENST00000581570 DDX42Q86XP3 938 aaKnown RBP eCLIP13.6□□□□□ -0.23
SS18-219ENST00000581570 BRSK2Q8IWQ3 736 aa13.6□□□□□ -0.23
SS18-219ENST00000581570 PHTF2Q8N3S3 785 aa13.6□□□□□ -0.23
SS18-219ENST00000581570 NAT16Q8N8M0 369 aa13.6□□□□□ -0.23
SS18-219ENST00000581570 SPRYD3Q8NCJ5 442 aa13.6□□□□□ -0.23
SS18-219ENST00000581570 CXorf38Q8TB03 319 aa13.6□□□□□ -0.23
SS18-219ENST00000581570 AK8Q96MA6 479 aa13.6□□□□□ -0.23
SS18-219ENST00000581570 TTLL2Q9BWV7 592 aa13.6□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms