RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 ST8SIA4Q92187 359 aa6.44□□□□□ -1.38
VPS53-219ENST00000576019 TNPO1Q92973 898 aaKnown RBP6.44□□□□□ -1.38
VPS53-219ENST00000576019 SCARF2Q96GP6 870 aaPredicted RBP6.44□□□□□ -1.38
VPS53-219ENST00000576019 TIGD1Q96MW7 591 aa6.44□□□□□ -1.38
VPS53-219ENST00000576019 C7orf26Q96N11 449 aa6.44□□□□□ -1.38
VPS53-219ENST00000576019 G6PC3Q9BUM1 346 aa6.44□□□□□ -1.38
VPS53-219ENST00000576019 MAGEB5Q9BZ81 275 aa6.44□□□□□ -1.38
VPS53-219ENST00000576019 PAIP1Q9H074 479 aaKnown RBP6.44□□□□□ -1.38
VPS53-219ENST00000576019 AP5M1Q9H0R1 490 aa6.44□□□□□ -1.38
VPS53-219ENST00000576019 MRPL46Q9H2W6 279 aaKnown RBP6.44□□□□□ -1.38
VPS53-219ENST00000576019 C11orf49Q9H6J7 331 aa6.44□□□□□ -1.38
VPS53-219ENST00000576019 LDAHQ9H6V9 325 aa6.44□□□□□ -1.38
VPS53-219ENST00000576019 SMURF2Q9HAU4 748 aa6.44□□□□□ -1.38
VPS53-219ENST00000576019 ATP13A1Q9HD20 1204 aa6.44□□□□□ -1.38
VPS53-219ENST00000576019 ZCCHC17Q9NP64 241 aaKnown RBP6.44□□□□□ -1.38
VPS53-219ENST00000576019 TMEM160Q9NX00 188 aa6.44□□□□□ -1.38
VPS53-219ENST00000576019 RGL1Q9NZL6 768 aa6.44□□□□□ -1.38
VPS53-219ENST00000576019 ZNF212Q9UDV6 495 aa6.44□□□□□ -1.38
VPS53-219ENST00000576019 WASF3Q9UPY6 502 aa6.44□□□□□ -1.38
VPS53-219ENST00000576019 PTPN13Q12923 2485 aa6.44□□□□□ -1.38
VPS53-219ENST00000576019 A0A1W2PP64 1363 aa6.44□□□□□ -1.38
VPS53-219ENST00000576019 CHD7Q9P2D1 2997 aa6.43□□□□□ -1.38
VPS53-219ENST00000576019 HELZ2Q9BYK8 2649 aaKnown RBP6.43□□□□□ -1.38
VPS53-219ENST00000576019 A0A1W2PQ45 241 aaPredicted RBP6.43□□□□□ -1.38
VPS53-219ENST00000576019 A0A1W2PQY0 241 aa6.43□□□□□ -1.38
VPS53-219ENST00000576019 BICDL2A1A5D9 508 aa6.43□□□□□ -1.38
VPS53-219ENST00000576019 ERVV-2B6SEH9 535 aa6.43□□□□□ -1.38
VPS53-219ENST00000576019 NT5C1B-RDH14C9J2C7 533 aa6.43□□□□□ -1.38
VPS53-219ENST00000576019 PRAMEF4O60810 478 aa6.43□□□□□ -1.38
VPS53-219ENST00000576019 FAM155BO75949 473 aa6.43□□□□□ -1.38
VPS53-219ENST00000576019 A1BGP04217 495 aa6.43□□□□□ -1.38
VPS53-219ENST00000576019 SLC3A2P08195 630 aaKnown RBP6.43□□□□□ -1.38
VPS53-219ENST00000576019 ITGA2BP08514 1039 aa6.43□□□□□ -1.38
VPS53-219ENST00000576019 HNRNPA1P09651 372 aaKnown RBP eCLIP6.43□□□□□ -1.38
VPS53-219ENST00000576019 MYCLP12524 364 aaPredicted RBP6.43□□□□□ -1.38
VPS53-219ENST00000576019 FUT4P22083 530 aa6.43□□□□□ -1.38
VPS53-219ENST00000576019 CST5P28325 142 aaPredicted RBP6.43□□□□□ -1.38
VPS53-219ENST00000576019 GABRB3P28472 473 aa6.43□□□□□ -1.38
VPS53-219ENST00000576019 PRDX5P30044 214 aa6.43□□□□□ -1.38
VPS53-219ENST00000576019 ECHS1P30084 290 aa6.43□□□□□ -1.38
VPS53-219ENST00000576019 ACTN2P35609 894 aa6.43□□□□□ -1.38
VPS53-219ENST00000576019 POLD2P49005 469 aa6.43□□□□□ -1.38
VPS53-219ENST00000576019 CLCN7P51798 805 aa6.43□□□□□ -1.38
VPS53-219ENST00000576019 PNLIPRP1P54315 467 aa6.43□□□□□ -1.38
VPS53-219ENST00000576019 MVKQ03426 396 aa6.43□□□□□ -1.38
VPS53-219ENST00000576019 ERV3-1Q14264 604 aa6.43□□□□□ -1.38
VPS53-219ENST00000576019 KIR3DS1Q14943 382 aa6.43□□□□□ -1.38
VPS53-219ENST00000576019 PRRT3Q5FWE3 981 aa6.43□□□□□ -1.38
VPS53-219ENST00000576019 SLC9C2Q5TAH2 1124 aa6.43□□□□□ -1.38
VPS53-219ENST00000576019 FAM180AQ6UWF9 173 aa6.43□□□□□ -1.38
VPS53-219ENST00000576019 Q6ZVL8 140 aa6.43□□□□□ -1.38
VPS53-219ENST00000576019 CABP7Q86V35 215 aa6.43□□□□□ -1.38
VPS53-219ENST00000576019 ZSCAN30Q86W11 494 aa6.43□□□□□ -1.38
VPS53-219ENST00000576019 GATAD2AQ86YP4 633 aa6.43□□□□□ -1.38
VPS53-219ENST00000576019 TSPYL6Q8N831 410 aa6.43□□□□□ -1.38
VPS53-219ENST00000576019 PCSK9Q8NBP7 692 aaKnown RBP6.43□□□□□ -1.38
VPS53-219ENST00000576019 TTLL11Q8NHH1 800 aa6.43□□□□□ -1.38
VPS53-219ENST00000576019 WFDC12Q8WWY7 111 aa6.43□□□□□ -1.38
VPS53-219ENST00000576019 THAP4Q8WY91 577 aa6.43□□□□□ -1.38
VPS53-219ENST00000576019 ATP6V1E2Q96A05 226 aa6.43□□□□□ -1.38
VPS53-219ENST00000576019 ASIC4Q96FT7 647 aa6.43□□□□□ -1.38
VPS53-219ENST00000576019 CCDC68Q9H2F9 335 aa6.43□□□□□ -1.38
VPS53-219ENST00000576019 SEPSECSQ9HD40 501 aaKnown RBP6.43□□□□□ -1.38
VPS53-219ENST00000576019 SLAMF7Q9NQ25 335 aa6.43□□□□□ -1.38
VPS53-219ENST00000576019 NECTIN3Q9NQS3 549 aa6.43□□□□□ -1.38
VPS53-219ENST00000576019 ST6GALNAC1Q9NSC7 600 aaPredicted RBP6.43□□□□□ -1.38
VPS53-219ENST00000576019 CALCOCO1Q9P1Z2 691 aa6.43□□□□□ -1.38
VPS53-219ENST00000576019 GIMAP2Q9UG22 337 aa6.43□□□□□ -1.38
VPS53-219ENST00000576019 ZBTB1Q9Y2K1 713 aa6.43□□□□□ -1.38
VPS53-219ENST00000576019 PFASO15067 1338 aa6.43□□□□□ -1.38
VPS53-219ENST00000576019 TRIOO75962 3097 aa6.43□□□□□ -1.38
VPS53-219ENST00000576019 RTL1A6NKG5 1358 aa6.43□□□□□ -1.38
VPS53-219ENST00000576019 SMG1Q96Q15 3661 aaKnown RBP6.42□□□□□ -1.38
VPS53-219ENST00000576019 YDJCA8MPS7 323 aa6.42□□□□□ -1.38
VPS53-219ENST00000576019 TMEM233B4DJY2 109 aa6.42□□□□□ -1.38
VPS53-219ENST00000576019 F2RL2O00254 374 aa6.42□□□□□ -1.38
VPS53-219ENST00000576019 CEACAM5P06731 702 aa6.42□□□□□ -1.38
VPS53-219ENST00000576019 CYP19A1P11511 503 aaPredicted RBP6.42□□□□□ -1.38
VPS53-219ENST00000576019 CTGFP29279 349 aa6.42□□□□□ -1.38
VPS53-219ENST00000576019 OAS2P29728 719 aaKnown RBP6.42□□□□□ -1.38
VPS53-219ENST00000576019 UBA7P41226 1012 aa6.42□□□□□ -1.38
VPS53-219ENST00000576019 PER3P56645 1201 aa6.42□□□□□ -1.38
VPS53-219ENST00000576019 SESN2P58004 480 aaPredicted RBP6.42□□□□□ -1.38
VPS53-219ENST00000576019 RTP1P59025 263 aa6.42□□□□□ -1.38
VPS53-219ENST00000576019 PLCB4Q15147 1175 aa6.42□□□□□ -1.38
VPS53-219ENST00000576019 MAN2A1Q16706 1144 aa6.42□□□□□ -1.38
VPS53-219ENST00000576019 CCDC92Q53HC0 331 aaPredicted RBP6.42□□□□□ -1.38
VPS53-219ENST00000576019 CD276Q5ZPR3 534 aa6.42□□□□□ -1.38
VPS53-219ENST00000576019 ABHD15Q6UXT9 468 aa6.42□□□□□ -1.38
VPS53-219ENST00000576019 CEP128Q6ZU80 1094 aa6.42□□□□□ -1.38
VPS53-219ENST00000576019 B4GALNT4Q76KP1 1039 aa6.42□□□□□ -1.38
VPS53-219ENST00000576019 CHD1LQ86WJ1 897 aa6.42□□□□□ -1.38
VPS53-219ENST00000576019 FAM90A1Q86YD7 464 aa6.42□□□□□ -1.38
VPS53-219ENST00000576019 CCDC117Q8IWD4 279 aaPredicted RBP6.42□□□□□ -1.38
VPS53-219ENST00000576019 SUGP2Q8IX01 1082 aaKnown RBP eCLIP6.42□□□□□ -1.384e-6■■■■□ 21.2
VPS53-219ENST00000576019 CHCHD4Q8N4Q1 142 aa6.42□□□□□ -1.38
VPS53-219ENST00000576019 FBXL6Q8N531 539 aa6.42□□□□□ -1.38
VPS53-219ENST00000576019 CCDC150Q8NCX0 1101 aa6.42□□□□□ -1.38
VPS53-219ENST00000576019 ZMIZ2Q8NF64 920 aa6.42□□□□□ -1.38
VPS53-219ENST00000576019 NUP43Q8NFH3 380 aa6.42□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 55.9 ms