RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 SEC13P55735 322 aa22.44■■□□□ 1.18
VPS53-216ENST00000574029 TNNC1P63316 161 aa22.44■■□□□ 1.18
VPS53-216ENST00000574029 CREB5Q02930 508 aa22.44■■□□□ 1.18
VPS53-216ENST00000574029 TAF10Q12962 218 aa22.44■■□□□ 1.18
VPS53-216ENST00000574029 ST3GAL2Q16842 350 aa22.44■■□□□ 1.18
VPS53-216ENST00000574029 C2orf27AQ580R0 203 aa22.44■■□□□ 1.18
VPS53-216ENST00000574029 TDRD10Q5VZ19 366 aaKnown RBP22.44■■□□□ 1.18
VPS53-216ENST00000574029 TCEAL6Q6IPX3 200 aa22.44■■□□□ 1.18
VPS53-216ENST00000574029 SHC4Q6S5L8 630 aa22.44■■□□□ 1.18
VPS53-216ENST00000574029 UNC13DQ70J99 1090 aa22.44■■□□□ 1.18
VPS53-216ENST00000574029 C11orf74Q86VG3 221 aa22.44■■□□□ 1.18
VPS53-216ENST00000574029 TCEAL3Q969E4 200 aa22.44■■□□□ 1.18
VPS53-216ENST00000574029 ZNF396Q96N95 335 aaPredicted RBP22.44■■□□□ 1.18
VPS53-216ENST00000574029 ZNF518BQ9C0D4 1074 aa22.44■■□□□ 1.18
VPS53-216ENST00000574029 TFIP11Q9UBB9 837 aaKnown RBP22.44■■□□□ 1.18
VPS53-216ENST00000574029 MMP17Q9ULZ9 603 aa22.44■■□□□ 1.18
VPS53-216ENST00000574029 SLC9A3R1O14745 358 aaPredicted RBP22.43■■□□□ 1.18
VPS53-216ENST00000574029 CUTAO60888 179 aa22.43■■□□□ 1.18
VPS53-216ENST00000574029 YEATS4O95619 227 aa22.43■■□□□ 1.18
VPS53-216ENST00000574029 CAVIN2O95810 425 aa22.43■■□□□ 1.18
VPS53-216ENST00000574029 CYP2J2P51589 502 aa22.43■■□□□ 1.18
VPS53-216ENST00000574029 MRPS21P82921 87 aaKnown RBP22.43■■□□□ 1.18
VPS53-216ENST00000574029 DHCR24Q15392 516 aa22.43■■□□□ 1.18
VPS53-216ENST00000574029 USP39Q53GS9 565 aaKnown RBP22.43■■□□□ 1.18
VPS53-216ENST00000574029 RNF43Q68DV7 783 aa22.43■■□□□ 1.18
VPS53-216ENST00000574029 NELFCDQ8IXH7 590 aa22.43■■□□□ 1.18
VPS53-216ENST00000574029 CNOT6LQ96LI5 555 aaKnown RBP22.43■■□□□ 1.18
VPS53-216ENST00000574029 SLITRK1Q96PX8 696 aa22.43■■□□□ 1.18
VPS53-216ENST00000574029 B3GNT5Q9BYG0 378 aa22.43■■□□□ 1.18
VPS53-216ENST00000574029 XYLT2Q9H1B5 865 aa22.43■■□□□ 1.18
VPS53-216ENST00000574029 SMPD4Q9NXE4 827 aa22.43■■□□□ 1.18
VPS53-216ENST00000574029 ACACBO00763 2458 aa22.43■■□□□ 1.18
VPS53-216ENST00000574029 NUP205Q92621 2012 aa22.43■■□□□ 1.18
VPS53-216ENST00000574029 TPRP12270 2363 aaKnown RBP22.42■■□□□ 1.18
VPS53-216ENST00000574029 A8MXQ7 604 aa22.42■■□□□ 1.18
VPS53-216ENST00000574029 K7ELQ4 463 aaPredicted RBP22.42■■□□□ 1.18
VPS53-216ENST00000574029 ABL1P00519 1130 aa22.42■■□□□ 1.18
VPS53-216ENST00000574029 CHRM1P11229 460 aaPredicted RBP22.42■■□□□ 1.18
VPS53-216ENST00000574029 ATICP31939 592 aa22.42■■□□□ 1.18
VPS53-216ENST00000574029 EIF2DP41214 584 aaKnown RBP22.42■■□□□ 1.18
VPS53-216ENST00000574029 MYL6P60660 151 aa22.42■■□□□ 1.18
VPS53-216ENST00000574029 TRPC3Q13507 836 aa22.42■■□□□ 1.18
VPS53-216ENST00000574029 CRY1Q16526 586 aa22.42■■□□□ 1.18
VPS53-216ENST00000574029 BMT2Q1RMZ1 405 aa22.42■■□□□ 1.18
VPS53-216ENST00000574029 PMS2CLQ68D20 193 aa22.42■■□□□ 1.18
VPS53-216ENST00000574029 C12orf56Q8IXR9 622 aa22.42■■□□□ 1.18
VPS53-216ENST00000574029 B3GALNT2Q8NCR0 500 aa22.42■■□□□ 1.18
VPS53-216ENST00000574029 CHAMP1Q96JM3 812 aa22.42■■□□□ 1.18
VPS53-216ENST00000574029 TPSD1Q9BZJ3 242 aa22.42■■□□□ 1.18
VPS53-216ENST00000574029 MAGEF1Q9HAY2 307 aa22.42■■□□□ 1.18
VPS53-216ENST00000574029 CFAP97Q9P2B7 532 aa22.42■■□□□ 1.18
VPS53-216ENST00000574029 CGNQ9P2M7 1197 aaKnown RBP22.42■■□□□ 1.18
VPS53-216ENST00000574029 ANGPTL2Q9UKU9 493 aa22.42■■□□□ 1.18
VPS53-216ENST00000574029 INVSQ9Y283 1065 aa22.42■■□□□ 1.18
VPS53-216ENST00000574029 CLDN5O00501 218 aa22.41■■□□□ 1.18
VPS53-216ENST00000574029 KCNK5O95279 499 aa22.41■■□□□ 1.18
VPS53-216ENST00000574029 GBP1P32455 592 aa22.41■■□□□ 1.18
VPS53-216ENST00000574029 SLC6A11P48066 632 aa22.41■■□□□ 1.18
VPS53-216ENST00000574029 SHC2P98077 582 aa22.41■■□□□ 1.18
VPS53-216ENST00000574029 ANO7Q6IWH7 933 aa22.41■■□□□ 1.18
VPS53-216ENST00000574029 RHBDF2Q6PJF5 856 aa22.41■■□□□ 1.18
VPS53-216ENST00000574029 DDX42Q86XP3 938 aaKnown RBP eCLIP22.41■■□□□ 1.18
VPS53-216ENST00000574029 NUP93Q8N1F7 819 aa22.41■■□□□ 1.18
VPS53-216ENST00000574029 CCDC33Q8N5R6 958 aa22.41■■□□□ 1.18
VPS53-216ENST00000574029 SYAP1Q96A49 352 aaPredicted RBP22.41■■□□□ 1.18
VPS53-216ENST00000574029 PNKPQ96T60 521 aa22.41■■□□□ 1.18
VPS53-216ENST00000574029 EDEM2Q9BV94 578 aa22.41■■□□□ 1.18
VPS53-216ENST00000574029 VRTNQ9H8Y1 702 aa22.41■■□□□ 1.18
VPS53-216ENST00000574029 NXF1Q9UBU9 619 aaKnown RBP22.41■■□□□ 1.18
VPS53-216ENST00000574029 EPG5Q9HCE0 2579 aa22.41■■□□□ 1.18
VPS53-216ENST00000574029 THADAQ6YHU6 1953 aa22.4■■□□□ 1.18
VPS53-216ENST00000574029 A0A0A0MRY4 1105 aa22.4■■□□□ 1.18
VPS53-216ENST00000574029 RTN3O95197 1032 aaPredicted RBP22.4■■□□□ 1.18
VPS53-216ENST00000574029 YWHAQP27348 245 aa22.4■■□□□ 1.18
VPS53-216ENST00000574029 MESP2Q0VG99 397 aa22.4■■□□□ 1.18
VPS53-216ENST00000574029 IFRD2Q12894 506 aaPredicted RBP22.4■■□□□ 1.18
VPS53-216ENST00000574029 TMEM92Q6UXU6 159 aa22.4■■□□□ 1.18
VPS53-216ENST00000574029 SFTPA1Q8IWL2 248 aa22.4■■□□□ 1.18
VPS53-216ENST00000574029 PDZD8Q8NEN9 1154 aa22.4■■□□□ 1.18
VPS53-216ENST00000574029 MDGA1Q8NFP4 955 aa22.4■■□□□ 1.18
VPS53-216ENST00000574029 OLIG1Q8TAK6 271 aa22.4■■□□□ 1.18
VPS53-216ENST00000574029 OVCA2Q8WZ82 227 aa22.4■■□□□ 1.18
VPS53-216ENST00000574029 SCAMP3O14828 347 aaKnown RBP22.39■■□□□ 1.17
VPS53-216ENST00000574029 POLR2DO15514 142 aaKnown RBP22.39■■□□□ 1.17
VPS53-216ENST00000574029 KAT7O95251 611 aa22.39■■□□□ 1.17
VPS53-216ENST00000574029 MBL2P11226 248 aaPredicted RBP22.39■■□□□ 1.17
VPS53-216ENST00000574029 HNRNPLP14866 589 aaKnown RBP eCLIP22.39■■□□□ 1.17
VPS53-216ENST00000574029 BCKDHBP21953 392 aa22.39■■□□□ 1.17
VPS53-216ENST00000574029 CASP1P29466 404 aa22.39■■□□□ 1.17
VPS53-216ENST00000574029 KNOP1Q1ED39 458 aaKnown RBP22.39■■□□□ 1.17
VPS53-216ENST00000574029 HSF5Q4G112 596 aaPredicted RBP22.39■■□□□ 1.17
VPS53-216ENST00000574029 C12orf40Q86WS4 652 aa22.39■■□□□ 1.17
VPS53-216ENST00000574029 IL17RCQ8NAC3 791 aa22.39■■□□□ 1.17
VPS53-216ENST00000574029 KCNK16Q96T55 309 aa22.39■■□□□ 1.17
VPS53-216ENST00000574029 BLZF1Q9H2G9 400 aa22.39■■□□□ 1.17
VPS53-216ENST00000574029 SLC39A2Q9NP94 309 aa22.39■■□□□ 1.17
VPS53-216ENST00000574029 TBC1D14Q9P2M4 693 aa22.39■■□□□ 1.17
VPS53-216ENST00000574029 MYOFQ9NZM1 2061 aa22.38■■□□□ 1.17
VPS53-216ENST00000574029 PVALEFA0A1B0GWK0 134 aa22.38■■□□□ 1.17
VPS53-216ENST00000574029 E2F8A0AVK6 867 aa22.38■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms