RNA–Protein interactions for RNA: ENST00000568558.6

CLN3-236, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 634 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-236ENST00000568558 PTPN1P18031 435 aaKnown RBP15.9■□□□□ 0.14
CLN3-236ENST00000568558 CASP1P29466 404 aa15.9■□□□□ 0.14
CLN3-236ENST00000568558 TAF10Q12962 218 aa15.9■□□□□ 0.14
CLN3-236ENST00000568558 BMT2Q1RMZ1 405 aa15.9■□□□□ 0.14
CLN3-236ENST00000568558 FILIP1Q7Z7B0 1213 aa15.9■□□□□ 0.14
CLN3-236ENST00000568558 C12orf56Q8IXR9 622 aa15.9■□□□□ 0.14
CLN3-236ENST00000568558 KIAA1958Q8N8K9 716 aa15.9■□□□□ 0.14
CLN3-236ENST00000568558 CCDC26Q8TAB7 109 aa15.9■□□□□ 0.14
CLN3-236ENST00000568558 USP33Q8TEY7 942 aa15.9■□□□□ 0.14
CLN3-236ENST00000568558 ZNF516Q92618 1163 aa15.9■□□□□ 0.14
CLN3-236ENST00000568558 ZNF518BQ9C0D4 1074 aa15.9■□□□□ 0.14
CLN3-236ENST00000568558 XYLT2Q9H1B5 865 aa15.9■□□□□ 0.14
CLN3-236ENST00000568558 BLZF1Q9H2G9 400 aa15.9■□□□□ 0.14
CLN3-236ENST00000568558 SMOC1Q9H4F8 434 aa15.9■□□□□ 0.14
CLN3-236ENST00000568558 CPQQ9Y646 472 aa15.9■□□□□ 0.14
CLN3-236ENST00000568558 A8MXQ7 604 aa15.89■□□□□ 0.13
CLN3-236ENST00000568558 K7EQS6 105 aa15.89■□□□□ 0.13
CLN3-236ENST00000568558 TM4SF5O14894 197 aa15.89■□□□□ 0.13
CLN3-236ENST00000568558 DCLK1O15075 740 aa15.89■□□□□ 0.13
CLN3-236ENST00000568558 POLR2DO15514 142 aaKnown RBP15.89■□□□□ 0.13
CLN3-236ENST00000568558 CYP17A1P05093 508 aa15.89■□□□□ 0.13
CLN3-236ENST00000568558 ATICP31939 592 aa15.89■□□□□ 0.13
CLN3-236ENST00000568558 DGKEP52429 567 aa15.89■□□□□ 0.13
CLN3-236ENST00000568558 MYL6P60660 151 aa15.89■□□□□ 0.13
CLN3-236ENST00000568558 TRPC3Q13507 836 aa15.89■□□□□ 0.13
CLN3-236ENST00000568558 ELF2Q15723 593 aa15.89■□□□□ 0.13
CLN3-236ENST00000568558 TDRD10Q5VZ19 366 aaKnown RBP15.89■□□□□ 0.13
CLN3-236ENST00000568558 B3GALNT2Q8NCR0 500 aa15.89■□□□□ 0.13
CLN3-236ENST00000568558 TSTD1Q8NFU3 115 aa15.89■□□□□ 0.13
CLN3-236ENST00000568558 SLITRK1Q96PX8 696 aa15.89■□□□□ 0.13
CLN3-236ENST00000568558 B3GNT5Q9BYG0 378 aa15.89■□□□□ 0.13
CLN3-236ENST00000568558 VPS45Q9NRW7 570 aa15.89■□□□□ 0.13
CLN3-236ENST00000568558 CGNQ9P2M7 1197 aaKnown RBP15.89■□□□□ 0.13
CLN3-236ENST00000568558 NXF1Q9UBU9 619 aaKnown RBP15.89■□□□□ 0.13
CLN3-236ENST00000568558 ANTXRLA6NF34 631 aa15.88■□□□□ 0.13
CLN3-236ENST00000568558 CLDN5O00501 218 aa15.88■□□□□ 0.13
CLN3-236ENST00000568558 RHOBTB1O94844 696 aa15.88■□□□□ 0.13
CLN3-236ENST00000568558 ABL1P00519 1130 aa15.88■□□□□ 0.13
CLN3-236ENST00000568558 KCNA4P22459 653 aa15.88■□□□□ 0.13
CLN3-236ENST00000568558 SEC13P55735 322 aa15.88■□□□□ 0.13
CLN3-236ENST00000568558 CUL4BQ13620 913 aa15.88■□□□□ 0.13
CLN3-236ENST00000568558 C2orf27AQ580R0 203 aa15.88■□□□□ 0.13
CLN3-236ENST00000568558 STPG1Q5TH74 334 aa15.88■□□□□ 0.13
CLN3-236ENST00000568558 ADGRG2Q8IZP9 1017 aa15.88■□□□□ 0.13
CLN3-236ENST00000568558 PLEKHO2Q8TD55 490 aa15.88■□□□□ 0.13
CLN3-236ENST00000568558 SNX21Q969T3 373 aa15.88■□□□□ 0.13
CLN3-236ENST00000568558 SYAP1Q96A49 352 aaPredicted RBP15.88■□□□□ 0.13
CLN3-236ENST00000568558 VRTNQ9H8Y1 702 aa15.88■□□□□ 0.13
CLN3-236ENST00000568558 SLC39A2Q9NP94 309 aa15.88■□□□□ 0.13
CLN3-236ENST00000568558 SMPD4Q9NXE4 827 aa15.88■□□□□ 0.13
CLN3-236ENST00000568558 MMP17Q9ULZ9 603 aa15.88■□□□□ 0.13
CLN3-236ENST00000568558 PVALEFA0A1B0GWK0 134 aa15.87■□□□□ 0.13
CLN3-236ENST00000568558 SLC9A3R1O14745 358 aaPredicted RBP15.87■□□□□ 0.13
CLN3-236ENST00000568558 SCAMP3O14828 347 aaKnown RBP15.87■□□□□ 0.13
CLN3-236ENST00000568558 EXOC3O60645 756 aa15.87■□□□□ 0.13
CLN3-236ENST00000568558 MBL2P11226 248 aaPredicted RBP15.87■□□□□ 0.13
CLN3-236ENST00000568558 YWHAQP27348 245 aa15.87■□□□□ 0.13
CLN3-236ENST00000568558 CASP4P49662 377 aa15.87■□□□□ 0.13
CLN3-236ENST00000568558 CREB5Q02930 508 aa15.87■□□□□ 0.13
CLN3-236ENST00000568558 IFRD2Q12894 506 aaPredicted RBP15.87■□□□□ 0.13
CLN3-236ENST00000568558 DHCR24Q15392 516 aa15.87■□□□□ 0.13
CLN3-236ENST00000568558 KNOP1Q1ED39 458 aaKnown RBP15.87■□□□□ 0.13
CLN3-236ENST00000568558 FOXD4L5Q5VV16 416 aaPredicted RBP15.87■□□□□ 0.13
CLN3-236ENST00000568558 TCEAL6Q6IPX3 200 aa15.87■□□□□ 0.13
CLN3-236ENST00000568558 RASSF3Q86WH2 238 aa15.87■□□□□ 0.13
CLN3-236ENST00000568558 NUP93Q8N1F7 819 aa15.87■□□□□ 0.13
CLN3-236ENST00000568558 FOXD4L4Q8WXT5 416 aaPredicted RBP15.87■□□□□ 0.13
CLN3-236ENST00000568558 TCEAL3Q969E4 200 aa15.87■□□□□ 0.13
CLN3-236ENST00000568558 TPSD1Q9BZJ3 242 aa15.87■□□□□ 0.13
CLN3-236ENST00000568558 SMYD3Q9H7B4 428 aa15.87■□□□□ 0.13
CLN3-236ENST00000568558 CFAP97Q9P2B7 532 aa15.87■□□□□ 0.13
CLN3-236ENST00000568558 BCLAF3A2AJT9 711 aaKnown RBP15.86■□□□□ 0.13
CLN3-236ENST00000568558 PHACTR2O75167 634 aa15.86■□□□□ 0.13
CLN3-236ENST00000568558 RTN3O95197 1032 aaPredicted RBP15.86■□□□□ 0.13
CLN3-236ENST00000568558 GBP1P32455 592 aa15.86■□□□□ 0.13
CLN3-236ENST00000568558 EIF2DP41214 584 aaKnown RBP15.86■□□□□ 0.13
CLN3-236ENST00000568558 AFMP43652 599 aa15.86■□□□□ 0.13
CLN3-236ENST00000568558 CDH8P55286 799 aa15.86■□□□□ 0.13
CLN3-236ENST00000568558 MRPS21P82921 87 aaKnown RBP15.86■□□□□ 0.13
CLN3-236ENST00000568558 CRY1Q16526 586 aa15.86■□□□□ 0.13
CLN3-236ENST00000568558 ZNF699Q32M78 642 aa15.86■□□□□ 0.13
CLN3-236ENST00000568558 FOXD4L6Q3SYB3 417 aaPredicted RBP15.86■□□□□ 0.13
CLN3-236ENST00000568558 RESP18Q5W5W9 173 aa15.86■□□□□ 0.13
CLN3-236ENST00000568558 PMS2CLQ68D20 193 aa15.86■□□□□ 0.13
CLN3-236ENST00000568558 ANO7Q6IWH7 933 aa15.86■□□□□ 0.13
CLN3-236ENST00000568558 RHBDF2Q6PJF5 856 aa15.86■□□□□ 0.13
CLN3-236ENST00000568558 FOXD4L3Q6VB84 417 aaPredicted RBP15.86■□□□□ 0.13
CLN3-236ENST00000568558 FAM35AQ86V20 835 aa15.86■□□□□ 0.13
CLN3-236ENST00000568558 C11orf74Q86VG3 221 aa15.86■□□□□ 0.13
CLN3-236ENST00000568558 DDX42Q86XP3 938 aaKnown RBP eCLIP15.86■□□□□ 0.13
CLN3-236ENST00000568558 PDZD8Q8NEN9 1154 aa15.86■□□□□ 0.13
CLN3-236ENST00000568558 PARD3BQ8TEW8 1205 aa15.86■□□□□ 0.13
CLN3-236ENST00000568558 OVCA2Q8WZ82 227 aa15.86■□□□□ 0.13
CLN3-236ENST00000568558 CNOT6LQ96LI5 555 aaKnown RBP15.86■□□□□ 0.13
CLN3-236ENST00000568558 PNKPQ96T60 521 aa15.86■□□□□ 0.13
CLN3-236ENST00000568558 FAM13BQ9NYF5 915 aa15.86■□□□□ 0.13
CLN3-236ENST00000568558 PCDHA7Q9UN72 937 aa15.86■□□□□ 0.13
CLN3-236ENST00000568558 ATP8B3O60423 1300 aa15.86■□□□□ 0.13
CLN3-236ENST00000568558 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP15.85■□□□□ 0.13
CLN3-236ENST00000568558 LRRIQ3A6PVS8 624 aaPredicted RBP15.85■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms