RNA–Protein interactions for RNA: ENST00000568539.1

SF3B3-212, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 555 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-212ENST00000568539 SPATA31D4Q6ZUB0 917 aa8.93□□□□□ -0.98
SF3B3-212ENST00000568539 PIGZQ86VD9 579 aa8.93□□□□□ -0.98
SF3B3-212ENST00000568539 VPS36Q86VN1 386 aa8.93□□□□□ -0.98
SF3B3-212ENST00000568539 SCN4BQ8IWT1 228 aa8.93□□□□□ -0.98
SF3B3-212ENST00000568539 CCDC170Q8IYT3 715 aa8.93□□□□□ -0.98
SF3B3-212ENST00000568539 KREMEN2Q8NCW0 462 aa8.93□□□□□ -0.98
SF3B3-212ENST00000568539 C1orf131Q8NDD1 294 aaKnown RBP8.93□□□□□ -0.98
SF3B3-212ENST00000568539 STK32AQ8WU08 396 aa8.93□□□□□ -0.98
SF3B3-212ENST00000568539 CCDC42Q96M95 316 aa8.93□□□□□ -0.98
SF3B3-212ENST00000568539 CDCA3Q99618 268 aaPredicted RBP8.93□□□□□ -0.98
SF3B3-212ENST00000568539 SEPT5Q99719 369 aaPredicted RBP8.93□□□□□ -0.98
SF3B3-212ENST00000568539 UBXN6Q9BZV1 441 aa8.93□□□□□ -0.98
SF3B3-212ENST00000568539 CYP4F11Q9HBI6 524 aa8.93□□□□□ -0.98
SF3B3-212ENST00000568539 PNPLA8Q9NP80 782 aa8.93□□□□□ -0.98
SF3B3-212ENST00000568539 SEPT11Q9NVA2 429 aaKnown RBP8.93□□□□□ -0.98
SF3B3-212ENST00000568539 CYTH4Q9UIA0 394 aa8.93□□□□□ -0.98
SF3B3-212ENST00000568539 NAGPAQ9UK23 515 aa8.93□□□□□ -0.98
SF3B3-212ENST00000568539 NENFQ9UMX5 172 aa8.93□□□□□ -0.98
SF3B3-212ENST00000568539 YIPF1Q9Y548 306 aa8.93□□□□□ -0.98
SF3B3-212ENST00000568539 CEP83Q9Y592 693 aa8.93□□□□□ -0.98
SF3B3-212ENST00000568539 INSL5Q9Y5Q6 135 aa8.93□□□□□ -0.98
SF3B3-212ENST00000568539 HCFC2Q9Y5Z7 792 aa8.93□□□□□ -0.98
SF3B3-212ENST00000568539 MTCH2Q9Y6C9 303 aa8.93□□□□□ -0.98
SF3B3-212ENST00000568539 PLXNA4Q9HCM2 1894 aa8.93□□□□□ -0.98
SF3B3-212ENST00000568539 COL4A4P53420 1690 aaPredicted RBP8.92□□□□□ -0.98
SF3B3-212ENST00000568539 TNFRSF10BO14763 440 aa8.92□□□□□ -0.98
SF3B3-212ENST00000568539 AKR1B10O60218 316 aa8.92□□□□□ -0.98
SF3B3-212ENST00000568539 C8AP07357 584 aa8.92□□□□□ -0.98
SF3B3-212ENST00000568539 GZMAP12544 262 aa8.92□□□□□ -0.98
SF3B3-212ENST00000568539 MMP8P22894 467 aa8.92□□□□□ -0.98
SF3B3-212ENST00000568539 GTF2F1P35269 517 aaKnown RBP eCLIP8.92□□□□□ -0.98
SF3B3-212ENST00000568539 RPL34P49207 117 aaKnown RBP8.92□□□□□ -0.98
SF3B3-212ENST00000568539 CCZ1BP86790 482 aa8.92□□□□□ -0.98
SF3B3-212ENST00000568539 CCZ1P86791 482 aaPredicted RBP8.92□□□□□ -0.98
SF3B3-212ENST00000568539 RBM10P98175 930 aaKnown RBP8.92□□□□□ -0.98
SF3B3-212ENST00000568539 GFPT1Q06210 699 aaPredicted RBP8.92□□□□□ -0.98
SF3B3-212ENST00000568539 PDCLQ13371 301 aa8.92□□□□□ -0.98
SF3B3-212ENST00000568539 MTF1Q14872 753 aa8.92□□□□□ -0.98
SF3B3-212ENST00000568539 SLC18A3Q16572 532 aa8.92□□□□□ -0.98
SF3B3-212ENST00000568539 DDR2Q16832 855 aa8.92□□□□□ -0.98
SF3B3-212ENST00000568539 RAB41Q5JT25 222 aa8.92□□□□□ -0.98
SF3B3-212ENST00000568539 LIN9Q5TKA1 542 aa8.92□□□□□ -0.98
SF3B3-212ENST00000568539 ACAD10Q6JQN1 1059 aa8.92□□□□□ -0.98
SF3B3-212ENST00000568539 PMF1Q6P1K2 205 aa8.92□□□□□ -0.98
SF3B3-212ENST00000568539 CCDC149Q6ZUS6 474 aa8.92□□□□□ -0.98
SF3B3-212ENST00000568539 RTL10Q7L3V2 364 aa8.92□□□□□ -0.98
SF3B3-212ENST00000568539 GPRIN1Q7Z2K8 1008 aa8.92□□□□□ -0.98
SF3B3-212ENST00000568539 CCDC112Q8NEF3 446 aa8.92□□□□□ -0.98
SF3B3-212ENST00000568539 VN1R2Q8NFZ6 395 aa8.92□□□□□ -0.98
SF3B3-212ENST00000568539 SLC7A14Q8TBB6 771 aa8.92□□□□□ -0.98
SF3B3-212ENST00000568539 HDAC7Q8WUI4 952 aa8.92□□□□□ -0.98
SF3B3-212ENST00000568539 CPA5Q8WXQ8 436 aa8.92□□□□□ -0.98
SF3B3-212ENST00000568539 KCTD13Q8WZ19 329 aa8.92□□□□□ -0.98
SF3B3-212ENST00000568539 PPP2R3CQ969Q6 453 aa8.92□□□□□ -0.98
SF3B3-212ENST00000568539 SPATA17Q96L03 361 aa8.92□□□□□ -0.98
SF3B3-212ENST00000568539 HSFY1Q96LI6 401 aa8.92□□□□□ -0.98
SF3B3-212ENST00000568539 CEP295NLQ96MC4 621 aa8.92□□□□□ -0.98
SF3B3-212ENST00000568539 CPXM1Q96SM3 734 aa8.92□□□□□ -0.98
SF3B3-212ENST00000568539 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP8.92□□□□□ -0.98
SF3B3-212ENST00000568539 SLC4A5Q9BY07 1137 aa8.92□□□□□ -0.98
SF3B3-212ENST00000568539 ISCUQ9H1K1 167 aa8.92□□□□□ -0.98
SF3B3-212ENST00000568539 DEF6Q9H4E7 631 aa8.92□□□□□ -0.98
SF3B3-212ENST00000568539 PLEKHA4Q9H4M7 779 aa8.92□□□□□ -0.98
SF3B3-212ENST00000568539 MAN1C1Q9NR34 630 aa8.92□□□□□ -0.98
SF3B3-212ENST00000568539 SPTLC3Q9NUV7 552 aa8.92□□□□□ -0.98
SF3B3-212ENST00000568539 TAS2R14Q9NYV8 317 aa8.92□□□□□ -0.98
SF3B3-212ENST00000568539 BDP1A6H8Y1 2624 aa8.91□□□□□ -0.98
SF3B3-212ENST00000568539 FAM170AA1A519 330 aa8.91□□□□□ -0.98
SF3B3-212ENST00000568539 EIF3CLB5ME19 914 aaKnown RBP8.91□□□□□ -0.98
SF3B3-212ENST00000568539 ZNF263O14978 683 aa8.91□□□□□ -0.98
SF3B3-212ENST00000568539 RTN2O75298 545 aa8.91□□□□□ -0.98
SF3B3-212ENST00000568539 NDUFA10O95299 355 aa8.91□□□□□ -0.98
SF3B3-212ENST00000568539 LCA5LO95447 670 aa8.91□□□□□ -0.98
SF3B3-212ENST00000568539 GLP2RO95838 553 aa8.91□□□□□ -0.98
SF3B3-212ENST00000568539 IGFBP4P22692 258 aa8.91□□□□□ -0.98
SF3B3-212ENST00000568539 HOXA9P31269 272 aa8.91□□□□□ -0.98
SF3B3-212ENST00000568539 CYLC1P35663 651 aaPredicted RBP8.91□□□□□ -0.98
SF3B3-212ENST00000568539 NSFP46459 744 aaKnown RBP8.91□□□□□ -0.98
SF3B3-212ENST00000568539 ALDH1A3P47895 512 aa8.91□□□□□ -0.98
SF3B3-212ENST00000568539 RGS7P49802 495 aa8.91□□□□□ -0.98
SF3B3-212ENST00000568539 SLC5A3P53794 718 aa8.91□□□□□ -0.98
SF3B3-212ENST00000568539 TWF1Q12792 350 aa8.91□□□□□ -0.98
SF3B3-212ENST00000568539 PTP4A2Q12974 167 aa8.91□□□□□ -0.98
SF3B3-212ENST00000568539 PTPN20Q4JDL3 420 aa8.91□□□□□ -0.98
SF3B3-212ENST00000568539 CCDC122Q5T0U0 273 aa8.91□□□□□ -0.98
SF3B3-212ENST00000568539 SDHAF4Q5VUM1 108 aa8.91□□□□□ -0.98
SF3B3-212ENST00000568539 PPP1R2P3Q6NXS1 205 aa8.91□□□□□ -0.98
SF3B3-212ENST00000568539 LLGL2Q6P1M3 1020 aa8.91□□□□□ -0.98
SF3B3-212ENST00000568539 ALKBH5Q6P6C2 394 aaKnown RBP8.91□□□□□ -0.98
SF3B3-212ENST00000568539 TMEM184AQ6ZMB5 413 aa8.91□□□□□ -0.98
SF3B3-212ENST00000568539 MON1BQ7L1V2 547 aa8.91□□□□□ -0.98
SF3B3-212ENST00000568539 TMEM110Q86TL2 294 aa8.91□□□□□ -0.98
SF3B3-212ENST00000568539 PHF13Q86YI8 300 aaPredicted RBP8.91□□□□□ -0.98
SF3B3-212ENST00000568539 EFHBQ8N7U6 833 aa8.91□□□□□ -0.98
SF3B3-212ENST00000568539 STKLD1Q8NE28 680 aa8.91□□□□□ -0.98
SF3B3-212ENST00000568539 GPR152Q8TDT2 470 aa8.91□□□□□ -0.98
SF3B3-212ENST00000568539 GIPC2Q8TF65 315 aa8.91□□□□□ -0.98
SF3B3-212ENST00000568539 PPP1R13BQ96KQ4 1090 aa8.91□□□□□ -0.98
SF3B3-212ENST00000568539 NOX5Q96PH1 765 aa8.91□□□□□ -0.98
SF3B3-212ENST00000568539 GAS2L1Q99501 681 aaPredicted RBP8.91□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms