RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, humanhuman

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-222ENST00000568232 NAT16Q8N8M0 369 aa12.63□□□□□ -0.39
CLK3-222ENST00000568232 NECAB1Q8N987 351 aa12.63□□□□□ -0.39
CLK3-222ENST00000568232 FSIP1Q8NA03 581 aa12.63□□□□□ -0.39
CLK3-222ENST00000568232 BAHD1Q8TBE0 780 aaPredicted RBP12.63□□□□□ -0.39
CLK3-222ENST00000568232 SNX29Q8TEQ0 813 aa12.63□□□□□ -0.39
CLK3-222ENST00000568232 RNF38Q9H0F5 515 aa12.63□□□□□ -0.39
CLK3-222ENST00000568232 FAM124BQ9H5Z6 455 aaPredicted RBP12.63□□□□□ -0.39
CLK3-222ENST00000568232 SMPD4Q9NXE4 827 aa12.63□□□□□ -0.39
CLK3-222ENST00000568232 GTF3C4Q9UKN8 822 aa12.63□□□□□ -0.39
CLK3-222ENST00000568232 HECTD1Q9ULT8 2610 aa12.63□□□□□ -0.39
CLK3-222ENST00000568232 SHROOM3Q8TF72 1996 aa12.63□□□□□ -0.39
CLK3-222ENST00000568232 A0A1W2PQF6 199 aa12.62□□□□□ -0.39
CLK3-222ENST00000568232 TBC1D3BA6NDS4 549 aa12.62□□□□□ -0.39
CLK3-222ENST00000568232 KPNA7A9QM74 516 aa12.62□□□□□ -0.39
CLK3-222ENST00000568232 PYCARD-AS1I3L0S3 204 aa12.62□□□□□ -0.39
CLK3-222ENST00000568232 HCRTO43612 131 aa12.62□□□□□ -0.39
CLK3-222ENST00000568232 PPP1R37O75864 691 aa12.62□□□□□ -0.39
CLK3-222ENST00000568232 HOXB2P14652 356 aa12.62□□□□□ -0.39
CLK3-222ENST00000568232 GNSP15586 552 aa12.62□□□□□ -0.39
CLK3-222ENST00000568232 NDUFV2P19404 249 aa12.62□□□□□ -0.39
CLK3-222ENST00000568232 CDC25AP30304 524 aa12.62□□□□□ -0.39
CLK3-222ENST00000568232 EIF2DP41214 584 aaKnown RBP12.62□□□□□ -0.39
CLK3-222ENST00000568232 LIG4P49917 911 aa12.62□□□□□ -0.39
CLK3-222ENST00000568232 SMTNP53814 917 aa12.62□□□□□ -0.39
CLK3-222ENST00000568232 GUCY1B3Q02153 619 aa12.62□□□□□ -0.39
CLK3-222ENST00000568232 NFE2Q16621 373 aaPredicted RBP12.62□□□□□ -0.39
CLK3-222ENST00000568232 CCDC157Q569K6 752 aa12.62□□□□□ -0.39
CLK3-222ENST00000568232 LURAP1LQ8IV03 231 aa12.62□□□□□ -0.39
CLK3-222ENST00000568232 GALNT15Q8N3T1 639 aa12.62□□□□□ -0.39
CLK3-222ENST00000568232 ZNF513Q8N8E2 541 aaPredicted RBP12.62□□□□□ -0.39
CLK3-222ENST00000568232 C4orf32Q8N8J7 132 aa12.62□□□□□ -0.39
CLK3-222ENST00000568232 RHBDD1Q8TEB9 315 aa12.62□□□□□ -0.39
CLK3-222ENST00000568232 TSPAN18Q96SJ8 248 aa12.62□□□□□ -0.39
CLK3-222ENST00000568232 TM6SF1Q9BZW5 370 aa12.62□□□□□ -0.39
CLK3-222ENST00000568232 GAREM1Q9H706 876 aa12.62□□□□□ -0.39
CLK3-222ENST00000568232 TM7SF3Q9NS93 570 aa12.62□□□□□ -0.39
CLK3-222ENST00000568232 DPP3Q9NY33 737 aa12.62□□□□□ -0.39
CLK3-222ENST00000568232 CPSF3Q9UKF6 684 aaKnown RBP12.62□□□□□ -0.39
CLK3-222ENST00000568232 FNDC3AQ9Y2H6 1198 aaKnown RBP12.62□□□□□ -0.39
CLK3-222ENST00000568232 CEP192Q8TEP8 1941 aa12.62□□□□□ -0.39
CLK3-222ENST00000568232 NPHP3-ACAD11A0A0J9YXS1 232 aa12.61□□□□□ -0.39
CLK3-222ENST00000568232 TRIM24O15164 1050 aa12.61□□□□□ -0.39
CLK3-222ENST00000568232 NDUFS2O75306 463 aa12.61□□□□□ -0.39
CLK3-222ENST00000568232 CILPO75339 1184 aa12.61□□□□□ -0.39
CLK3-222ENST00000568232 ZNF217O75362 1048 aa12.61□□□□□ -0.39
CLK3-222ENST00000568232 ADH5P11766 374 aa12.61□□□□□ -0.39
CLK3-222ENST00000568232 GUCY2CP25092 1073 aa12.61□□□□□ -0.39
CLK3-222ENST00000568232 EIF2S3P41091 472 aaKnown RBP12.61□□□□□ -0.39
CLK3-222ENST00000568232 ACOT2P49753 483 aa12.61□□□□□ -0.39
CLK3-222ENST00000568232 USP46P62068 366 aa12.61□□□□□ -0.39
CLK3-222ENST00000568232 BNC1Q01954 994 aa12.61□□□□□ -0.39
CLK3-222ENST00000568232 PDIA5Q14554 519 aa12.61□□□□□ -0.39
CLK3-222ENST00000568232 SYCP2LQ5T4T6 812 aa12.61□□□□□ -0.39
CLK3-222ENST00000568232 PCSK4Q6UW60 755 aa12.61□□□□□ -0.39
CLK3-222ENST00000568232 CD302Q8IX05 232 aa12.61□□□□□ -0.39
CLK3-222ENST00000568232 PDCL2Q8N4E4 241 aa12.61□□□□□ -0.39
CLK3-222ENST00000568232 LEO1Q8WVC0 666 aaPredicted RBP12.61□□□□□ -0.39
CLK3-222ENST00000568232 FCRL3Q96P31 734 aaPredicted RBP12.61□□□□□ -0.39
CLK3-222ENST00000568232 ACOX2Q99424 681 aa12.61□□□□□ -0.39
CLK3-222ENST00000568232 PKMYT1Q99640 499 aa12.61□□□□□ -0.39
CLK3-222ENST00000568232 MSTO1Q9BUK6 570 aa12.61□□□□□ -0.39
CLK3-222ENST00000568232 ZDHHC5Q9C0B5 715 aa12.61□□□□□ -0.39
CLK3-222ENST00000568232 CCSER1Q9C0I3 900 aa12.61□□□□□ -0.39
CLK3-222ENST00000568232 CD248Q9HCU0 757 aa12.61□□□□□ -0.39
CLK3-222ENST00000568232 DDX43Q9NXZ2 648 aaKnown RBP12.61□□□□□ -0.39
CLK3-222ENST00000568232 SUSD2Q9UGT4 822 aa12.61□□□□□ -0.39
CLK3-222ENST00000568232 BTBD3Q9Y2F9 522 aa12.61□□□□□ -0.39
CLK3-222ENST00000568232 CPQQ9Y646 472 aa12.61□□□□□ -0.39
CLK3-222ENST00000568232 MGAQ8IWI9 3026 aa12.61□□□□□ -0.39
CLK3-222ENST00000568232 A0A0B4J269 797 aa12.6□□□□□ -0.39
CLK3-222ENST00000568232 PLK4O00444 970 aa12.6□□□□□ -0.39
CLK3-222ENST00000568232 HNRNPDLO14979 420 aaKnown RBP12.6□□□□□ -0.39
CLK3-222ENST00000568232 TLX3O43711 291 aaPredicted RBP12.6□□□□□ -0.39
CLK3-222ENST00000568232 JAK2O60674 1132 aa12.6□□□□□ -0.39
CLK3-222ENST00000568232 CFHR1Q03591 330 aa12.6□□□□□ -0.39
CLK3-222ENST00000568232 TRIM29Q14134 588 aa12.6□□□□□ -0.39
CLK3-222ENST00000568232 KYAT1Q16773 422 aa12.6□□□□□ -0.39
CLK3-222ENST00000568232 HLA-BQ31612 363 aa12.6□□□□□ -0.39
CLK3-222ENST00000568232 INTS6LQ5JSJ4 861 aaKnown RBP12.6□□□□□ -0.39
CLK3-222ENST00000568232 WDR45BQ5MNZ6 344 aa12.6□□□□□ -0.39
CLK3-222ENST00000568232 LY6G5CQ5SRR4 150 aa12.6□□□□□ -0.39
CLK3-222ENST00000568232 SCARA3Q6AZY7 606 aa12.6□□□□□ -0.39
CLK3-222ENST00000568232 SLC39A4Q6P5W5 647 aa12.6□□□□□ -0.39
CLK3-222ENST00000568232 OSTM1Q86WC4 334 aa12.6□□□□□ -0.39
CLK3-222ENST00000568232 SPATA2LQ8IUW3 424 aaPredicted RBP12.6□□□□□ -0.39
CLK3-222ENST00000568232 ZCCHC9Q8N567 271 aaKnown RBP12.6□□□□□ -0.39
CLK3-222ENST00000568232 LSM14AQ8ND56 463 aaKnown RBP12.6□□□□□ -0.39
CLK3-222ENST00000568232 IPO4Q8TEX9 1081 aaKnown RBP12.6□□□□□ -0.39
CLK3-222ENST00000568232 ACBD6Q9BR61 282 aa12.6□□□□□ -0.39
CLK3-222ENST00000568232 MIR1-1HGQ9H1L0 117 aa12.6□□□□□ -0.39
CLK3-222ENST00000568232 ABCB6Q9NP58 842 aa12.6□□□□□ -0.39
CLK3-222ENST00000568232 CFAP97Q9P2B7 532 aa12.6□□□□□ -0.39
CLK3-222ENST00000568232 L1RE1Q9UN81 338 aa12.6□□□□□ -0.39
CLK3-222ENST00000568232 WDR3Q9UNX4 943 aaKnown RBP eCLIP12.6□□□□□ -0.39
CLK3-222ENST00000568232 DERAQ9Y315 318 aa12.6□□□□□ -0.39
CLK3-222ENST00000568232 RAD54BQ9Y620 910 aa12.6□□□□□ -0.39
CLK3-222ENST00000568232 SCN1AP35498 2009 aa12.6□□□□□ -0.39
CLK3-222ENST00000568232 MYO18BQ8IUG5 2567 aa12.6□□□□□ -0.39
CLK3-222ENST00000568232 A0A1B0GTW7 788 aa12.59□□□□□ -0.39
CLK3-222ENST00000568232 REC8O95072 547 aa12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms