RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 NR1H3Q13133 447 aa22■■□□□ 1.11
CLN3-219ENST00000565778 WDR44Q5JSH3 913 aa22■■□□□ 1.11
CLN3-219ENST00000565778 KRT39Q6A163 491 aa22■■□□□ 1.11
CLN3-219ENST00000565778 Q6ZS52 159 aa22■■□□□ 1.11
CLN3-219ENST00000565778 FUKQ8N0W3 1084 aa22■■□□□ 1.11
CLN3-219ENST00000565778 SYNPOQ8N3V7 929 aa22■■□□□ 1.11
CLN3-219ENST00000565778 ZBTB44Q8NCP5 570 aa22■■□□□ 1.11
CLN3-219ENST00000565778 HINFPQ9BQA5 517 aa22■■□□□ 1.11
CLN3-219ENST00000565778 GTPBP4Q9BZE4 634 aaKnown RBP22■■□□□ 1.11
CLN3-219ENST00000565778 LINC00597Q9H2U6 94 aa22■■□□□ 1.11
CLN3-219ENST00000565778 ECT2Q9H8V3 914 aa22■■□□□ 1.11
CLN3-219ENST00000565778 CYP3A43Q9HB55 503 aa22■■□□□ 1.11
CLN3-219ENST00000565778 APOBEC3GQ9HC16 384 aaKnown RBP22■■□□□ 1.11
CLN3-219ENST00000565778 DMAP1Q9NPF5 467 aaPredicted RBP22■■□□□ 1.11
CLN3-219ENST00000565778 VPS13AQ96RL7 3174 aa22■■□□□ 1.11
CLN3-219ENST00000565778 DENND4CQ5VZ89 1909 aa22■■□□□ 1.11
CLN3-219ENST00000565778 LEFTY2O00292 366 aa21.99■■□□□ 1.11
CLN3-219ENST00000565778 STX10O60499 249 aa21.99■■□□□ 1.11
CLN3-219ENST00000565778 CCDC130P13994 396 aa21.99■■□□□ 1.11
CLN3-219ENST00000565778 GALK1P51570 392 aa21.99■■□□□ 1.11
CLN3-219ENST00000565778 USP4Q13107 963 aa21.99■■□□□ 1.11
CLN3-219ENST00000565778 CCINQ13939 588 aa21.99■■□□□ 1.11
CLN3-219ENST00000565778 ANKRD40Q6AI12 368 aa21.99■■□□□ 1.11
CLN3-219ENST00000565778 ISM2Q6H9L7 571 aa21.99■■□□□ 1.11
CLN3-219ENST00000565778 C12orf29Q8N999 325 aa21.99■■□□□ 1.11
CLN3-219ENST00000565778 PDZD8Q8NEN9 1154 aa21.99■■□□□ 1.11
CLN3-219ENST00000565778 SCAMP5Q8TAC9 235 aa21.99■■□□□ 1.11
CLN3-219ENST00000565778 SLC2A14Q8TDB8 520 aa21.99■■□□□ 1.11
CLN3-219ENST00000565778 NELL1Q92832 810 aa21.99■■□□□ 1.11
CLN3-219ENST00000565778 ATP2A3Q93084 1043 aa21.99■■□□□ 1.11
CLN3-219ENST00000565778 EXOC4Q96A65 974 aa21.99■■□□□ 1.11
CLN3-219ENST00000565778 FAM49BQ9NUQ9 324 aa21.99■■□□□ 1.11
CLN3-219ENST00000565778 HMGXB4Q9UGU5 601 aa21.99■■□□□ 1.11
CLN3-219ENST00000565778 ZNF638Q14966 1978 aaKnown RBP21.99■■□□□ 1.11
CLN3-219ENST00000565778 TRDMT1O14717 391 aaKnown RBP21.98■■□□□ 1.11
CLN3-219ENST00000565778 TCF3P15923 654 aa21.98■■□□□ 1.11
CLN3-219ENST00000565778 CD58P19256 250 aa21.98■■□□□ 1.11
CLN3-219ENST00000565778 GJA4P35212 333 aa21.98■■□□□ 1.11
CLN3-219ENST00000565778 MAP3K7CLP57077 242 aa21.98■■□□□ 1.11
CLN3-219ENST00000565778 SLC7A9P82251 487 aa21.98■■□□□ 1.11
CLN3-219ENST00000565778 ZXDBP98169 803 aa21.98■■□□□ 1.11
CLN3-219ENST00000565778 FKBP3Q00688 224 aaKnown RBP21.98■■□□□ 1.11
CLN3-219ENST00000565778 TMEM196Q5HYL7 178 aa21.98■■□□□ 1.11
CLN3-219ENST00000565778 SPATA20Q8TB22 786 aa21.98■■□□□ 1.11
CLN3-219ENST00000565778 SMOQ99835 787 aa21.98■■□□□ 1.11
CLN3-219ENST00000565778 NT5C1AQ9BXI3 368 aa21.98■■□□□ 1.11
CLN3-219ENST00000565778 DNAI2Q9GZS0 605 aa21.98■■□□□ 1.11
CLN3-219ENST00000565778 NIF3L1Q9GZT8 377 aa21.98■■□□□ 1.11
CLN3-219ENST00000565778 KRT82Q9NSB4 513 aa21.98■■□□□ 1.11
CLN3-219ENST00000565778 SMPD4Q9NXE4 827 aa21.98■■□□□ 1.11
CLN3-219ENST00000565778 CPQQ9Y646 472 aa21.98■■□□□ 1.11
CLN3-219ENST00000565778 TNFRSF10BO14763 440 aa21.97■■□□□ 1.11
CLN3-219ENST00000565778 BEST1O76090 585 aa21.97■■□□□ 1.11
CLN3-219ENST00000565778 ADORA2BP29275 332 aa21.97■■□□□ 1.11
CLN3-219ENST00000565778 SLC5A3P53794 718 aa21.97■■□□□ 1.11
CLN3-219ENST00000565778 EML3Q32P44 896 aa21.97■■□□□ 1.11
CLN3-219ENST00000565778 COBLL1Q53SF7 1204 aa21.97■■□□□ 1.11
CLN3-219ENST00000565778 TCERG1LQ5VWI1 586 aa21.97■■□□□ 1.11
CLN3-219ENST00000565778 FSTL4Q6MZW2 842 aa21.97■■□□□ 1.11
CLN3-219ENST00000565778 SUMF1Q8NBK3 374 aa21.97■■□□□ 1.11
CLN3-219ENST00000565778 OVCA2Q8WZ82 227 aa21.97■■□□□ 1.11
CLN3-219ENST00000565778 RUBCNQ92622 972 aa21.97■■□□□ 1.11
CLN3-219ENST00000565778 CYFIP2Q96F07 1278 aa21.97■■□□□ 1.11
CLN3-219ENST00000565778 P2RY13Q9BPV8 354 aa21.97■■□□□ 1.11
CLN3-219ENST00000565778 FBRSL1Q9HCM7 1045 aaKnown RBP21.97■■□□□ 1.11
CLN3-219ENST00000565778 COMMD8Q9NX08 183 aa21.97■■□□□ 1.11
CLN3-219ENST00000565778 PATJQ8NI35 1801 aa21.96■■□□□ 1.11
CLN3-219ENST00000565778 OBSL1O75147 1896 aa21.96■■□□□ 1.11
CLN3-219ENST00000565778 LILRB5O75023 590 aa21.96■■□□□ 1.11
CLN3-219ENST00000565778 OAS1P00973 400 aaKnown RBP21.96■■□□□ 1.11
CLN3-219ENST00000565778 MBL2P11226 248 aaPredicted RBP21.96■■□□□ 1.11
CLN3-219ENST00000565778 TDGF1P13385 188 aa21.96■■□□□ 1.11
CLN3-219ENST00000565778 MXI1P50539 228 aa21.96■■□□□ 1.11
CLN3-219ENST00000565778 MCCD1P59942 119 aaPredicted RBP21.96■■□□□ 1.11
CLN3-219ENST00000565778 INCA1Q0VD86 236 aa21.96■■□□□ 1.11
CLN3-219ENST00000565778 STIM1Q13586 685 aa21.96■■□□□ 1.11
CLN3-219ENST00000565778 FBXL13Q8NEE6 735 aa21.96■■□□□ 1.11
CLN3-219ENST00000565778 ZMIZ2Q8NF64 920 aa21.96■■□□□ 1.11
CLN3-219ENST00000565778 SEMA4DQ92854 862 aa21.96■■□□□ 1.11
CLN3-219ENST00000565778 CHFRQ96EP1 664 aa21.96■■□□□ 1.11
CLN3-219ENST00000565778 TWNKQ96RR1 684 aa21.96■■□□□ 1.11
CLN3-219ENST00000565778 CSNK1G1Q9HCP0 422 aa21.96■■□□□ 1.11
CLN3-219ENST00000565778 RAB20Q9NX57 234 aa21.96■■□□□ 1.11
CLN3-219ENST00000565778 IL37Q9NZH6 218 aa21.96■■□□□ 1.11
CLN3-219ENST00000565778 PTPRZ1P23471 2315 aaPredicted RBP21.96■■□□□ 1.11
CLN3-219ENST00000565778 NFATC1O95644 943 aa21.95■■□□□ 1.1
CLN3-219ENST00000565778 FAM200BP0CF97 657 aa21.95■■□□□ 1.1
CLN3-219ENST00000565778 DRD1P21728 446 aa21.95■■□□□ 1.1
CLN3-219ENST00000565778 PMS1P54277 932 aaKnown RBP21.95■■□□□ 1.1
CLN3-219ENST00000565778 DCAF17Q5H9S7 520 aaPredicted RBP21.95■■□□□ 1.1
CLN3-219ENST00000565778 HECTD3Q5T447 861 aa21.95■■□□□ 1.1
CLN3-219ENST00000565778 ELOA2Q8IYF1 753 aaPredicted RBP21.95■■□□□ 1.1
CLN3-219ENST00000565778 HNRNPABQ99729 332 aaKnown RBP21.95■■□□□ 1.1
CLN3-219ENST00000565778 FBXO44Q9H4M3 255 aa21.95■■□□□ 1.1
CLN3-219ENST00000565778 CFAP97Q9P2B7 532 aa21.95■■□□□ 1.1
CLN3-219ENST00000565778 GREB1Q4ZG55 1949 aa21.95■■□□□ 1.1
CLN3-219ENST00000565778 PTPRDP23468 1912 aa21.94■■□□□ 1.1
CLN3-219ENST00000565778 DMDP11532 3685 aa21.94■■□□□ 1.1
CLN3-219ENST00000565778 COCHO43405 550 aa21.94■■□□□ 1.1
CLN3-219ENST00000565778 ATG13O75143 517 aa21.94■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 57.1 ms