RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 CD72P21854 359 aa18.29■□□□□ 0.52
CLN3-217ENST00000565354 MAGEA11P43364 429 aa18.29■□□□□ 0.52
CLN3-217ENST00000565354 MFAP3P55082 362 aa18.29■□□□□ 0.52
CLN3-217ENST00000565354 GCNT1Q02742 428 aa18.29■□□□□ 0.52
CLN3-217ENST00000565354 VSTM1Q6UX27 236 aa18.29■□□□□ 0.52
CLN3-217ENST00000565354 CRYBG2Q8N1P7 616 aa18.29■□□□□ 0.52
CLN3-217ENST00000565354 CLDN23Q96B33 292 aa18.29■□□□□ 0.52
CLN3-217ENST00000565354 TMEM176AQ96HP8 235 aa18.29■□□□□ 0.52
CLN3-217ENST00000565354 PCMTD1Q96MG8 357 aaPredicted RBP18.29■□□□□ 0.52
CLN3-217ENST00000565354 TWNKQ96RR1 684 aa18.29■□□□□ 0.52
CLN3-217ENST00000565354 KXD1Q9BQD3 176 aa18.29■□□□□ 0.52
CLN3-217ENST00000565354 B3GNT5Q9BYG0 378 aa18.29■□□□□ 0.52
CLN3-217ENST00000565354 TSPY26PQ9H489 355 aa18.29■□□□□ 0.52
CLN3-217ENST00000565354 CBX8Q9HC52 389 aa18.29■□□□□ 0.52
CLN3-217ENST00000565354 CEP72Q9P209 647 aa18.29■□□□□ 0.52
CLN3-217ENST00000565354 DNMT3BQ9UBC3 853 aaKnown RBP18.29■□□□□ 0.52
CLN3-217ENST00000565354 LIMA1Q9UHB6 759 aaKnown RBP18.29■□□□□ 0.52
CLN3-217ENST00000565354 USP24Q9UPU5 2620 aa18.29■□□□□ 0.52
CLN3-217ENST00000565354 ZFHX4Q86UP3 3567 aa18.28■□□□□ 0.52
CLN3-217ENST00000565354 CLDN5O00501 218 aa18.28■□□□□ 0.52
CLN3-217ENST00000565354 ZNF197O14709 1029 aa18.28■□□□□ 0.52
CLN3-217ENST00000565354 TRIM66O15016 1216 aa18.28■□□□□ 0.52
CLN3-217ENST00000565354 MYL4P12829 197 aa18.28■□□□□ 0.52
CLN3-217ENST00000565354 CCDC130P13994 396 aa18.28■□□□□ 0.52
CLN3-217ENST00000565354 CD19P15391 556 aa18.28■□□□□ 0.52
CLN3-217ENST00000565354 ZNF18P17022 549 aa18.28■□□□□ 0.52
CLN3-217ENST00000565354 PON1P27169 355 aa18.28■□□□□ 0.52
CLN3-217ENST00000565354 ADORA2BP29275 332 aa18.28■□□□□ 0.52
CLN3-217ENST00000565354 GPR15P49685 360 aa18.28■□□□□ 0.52
CLN3-217ENST00000565354 DDR2Q16832 855 aa18.28■□□□□ 0.52
CLN3-217ENST00000565354 FILIP1LQ4L180 1135 aa18.28■□□□□ 0.52
CLN3-217ENST00000565354 SDHAF4Q5VUM1 108 aa18.28■□□□□ 0.52
CLN3-217ENST00000565354 TMEM270Q6UE05 265 aa18.28■□□□□ 0.52
CLN3-217ENST00000565354 LRSAM1Q6UWE0 723 aa18.28■□□□□ 0.52
CLN3-217ENST00000565354 ENOSF1Q7L5Y1 443 aa18.28■□□□□ 0.52
CLN3-217ENST00000565354 FAM35AQ86V20 835 aa18.28■□□□□ 0.52
CLN3-217ENST00000565354 LEMD2Q8NC56 503 aa18.28■□□□□ 0.52
CLN3-217ENST00000565354 ITFG1Q8TB96 612 aa18.28■□□□□ 0.52
CLN3-217ENST00000565354 SLC2A14Q8TDB8 520 aa18.28■□□□□ 0.52
CLN3-217ENST00000565354 KAT5Q92993 513 aa18.28■□□□□ 0.52
CLN3-217ENST00000565354 SMARCD1Q96GM5 515 aa18.28■□□□□ 0.52
CLN3-217ENST00000565354 NELL2Q99435 816 aa18.28■□□□□ 0.52
CLN3-217ENST00000565354 LSM14BQ9BX40 385 aaKnown RBP18.28■□□□□ 0.52
CLN3-217ENST00000565354 ZNF518BQ9C0D4 1074 aa18.28■□□□□ 0.52
CLN3-217ENST00000565354 APEX2Q9UBZ4 518 aa18.28■□□□□ 0.52
CLN3-217ENST00000565354 MAGED2Q9UNF1 606 aaPredicted RBP18.28■□□□□ 0.52
CLN3-217ENST00000565354 MRPS23Q9Y3D9 190 aaKnown RBP18.28■□□□□ 0.52
CLN3-217ENST00000565354 CACNA1GO43497 2377 aa18.27■□□□□ 0.52
CLN3-217ENST00000565354 AP1G2O75843 785 aa18.27■□□□□ 0.52
CLN3-217ENST00000565354 CSH1P0DML2 217 aa18.27■□□□□ 0.52
CLN3-217ENST00000565354 CSH2P0DML3 217 aa18.27■□□□□ 0.52
CLN3-217ENST00000565354 KRT5P13647 590 aa18.27■□□□□ 0.52
CLN3-217ENST00000565354 ATF6P18850 670 aa18.27■□□□□ 0.52
CLN3-217ENST00000565354 TGM1P22735 817 aa18.27■□□□□ 0.52
CLN3-217ENST00000565354 RPS9P46781 194 aaKnown RBP18.27■□□□□ 0.52
CLN3-217ENST00000565354 IQCB1Q15051 598 aa18.27■□□□□ 0.52
CLN3-217ENST00000565354 ARHGAP44Q17R89 818 aa18.27■□□□□ 0.52
CLN3-217ENST00000565354 DNAJB7Q7Z6W7 309 aaPredicted RBP18.27■□□□□ 0.52
CLN3-217ENST00000565354 LUZP1Q86V48 1076 aa18.27■□□□□ 0.52
CLN3-217ENST00000565354 HS6ST3Q8IZP7 471 aa18.27■□□□□ 0.52
CLN3-217ENST00000565354 C12orf29Q8N999 325 aa18.27■□□□□ 0.52
CLN3-217ENST00000565354 WHAMMQ8TF30 809 aa18.27■□□□□ 0.52
CLN3-217ENST00000565354 PSMG2Q969U7 264 aa18.27■□□□□ 0.52
CLN3-217ENST00000565354 CYFIP2Q96F07 1278 aa18.27■□□□□ 0.52
CLN3-217ENST00000565354 GCNAQ96QF7 691 aa18.27■□□□□ 0.52
CLN3-217ENST00000565354 RTKNQ9BST9 563 aa18.27■□□□□ 0.52
CLN3-217ENST00000565354 KRT82Q9NSB4 513 aa18.27■□□□□ 0.52
CLN3-217ENST00000565354 USP18Q9UMW8 372 aa18.27■□□□□ 0.52
CLN3-217ENST00000565354 DCDC2BA2VCK2 349 aa18.26■□□□□ 0.51
CLN3-217ENST00000565354 NCAM2O15394 837 aa18.26■□□□□ 0.51
CLN3-217ENST00000565354 SERPINC1P01008 464 aa18.26■□□□□ 0.51
CLN3-217ENST00000565354 FAM200BP0CF97 657 aa18.26■□□□□ 0.51
CLN3-217ENST00000565354 ATP1A3P13637 1013 aa18.26■□□□□ 0.51
CLN3-217ENST00000565354 TARSP26639 723 aaKnown RBP18.26■□□□□ 0.51
CLN3-217ENST00000565354 USP8P40818 1118 aa18.26■□□□□ 0.51
CLN3-217ENST00000565354 RAD23BP54727 409 aa18.26■□□□□ 0.51
CLN3-217ENST00000565354 UBXN1Q04323 297 aa18.26■□□□□ 0.51
CLN3-217ENST00000565354 GJB7Q6PEY0 223 aa18.26■□□□□ 0.51
CLN3-217ENST00000565354 TSSK4Q6SA08 328 aa18.26■□□□□ 0.51
CLN3-217ENST00000565354 TPRG1Q6ZUI0 275 aa18.26■□□□□ 0.51
CLN3-217ENST00000565354 NPAS3Q8IXF0 933 aa18.26■□□□□ 0.51
CLN3-217ENST00000565354 SLC4A11Q8NBS3 891 aa18.26■□□□□ 0.51
CLN3-217ENST00000565354 PRMT8Q9NR22 394 aaPredicted RBP18.26■□□□□ 0.51
CLN3-217ENST00000565354 CFAP47Q6ZTR5 3102 aa18.26■□□□□ 0.51
CLN3-217ENST00000565354 CNOT1A5YKK6 2376 aaKnown RBP18.25■□□□□ 0.51
CLN3-217ENST00000565354 SLC38A8A6NNN8 435 aa18.25■□□□□ 0.51
CLN3-217ENST00000565354 LGALS16A8MUM7 142 aa18.25■□□□□ 0.51
CLN3-217ENST00000565354 F8VP50 259 aa18.25■□□□□ 0.51
CLN3-217ENST00000565354 FGF19O95750 216 aa18.25■□□□□ 0.51
CLN3-217ENST00000565354 SGO2Q562F6 1265 aa18.25■□□□□ 0.51
CLN3-217ENST00000565354 FUKQ8N0W3 1084 aa18.25■□□□□ 0.51
CLN3-217ENST00000565354 RBBP8NLQ8NC74 664 aaPredicted RBP18.25■□□□□ 0.51
CLN3-217ENST00000565354 ING5Q8WYH8 240 aa18.25■□□□□ 0.51
CLN3-217ENST00000565354 JAKMIP2Q96AA8 810 aa18.25■□□□□ 0.51
CLN3-217ENST00000565354 C8orf48Q96LL4 319 aa18.25■□□□□ 0.51
CLN3-217ENST00000565354 KREMEN1Q96MU8 473 aa18.25■□□□□ 0.51
CLN3-217ENST00000565354 FAM126AQ9BYI3 521 aaPredicted RBP18.25■□□□□ 0.51
CLN3-217ENST00000565354 HSD3B7Q9H2F3 369 aa18.25■□□□□ 0.51
CLN3-217ENST00000565354 DMAP1Q9NPF5 467 aaPredicted RBP18.25■□□□□ 0.51
CLN3-217ENST00000565354 EHD2Q9NZN4 543 aa18.25■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms