RNA–Protein interactions for RNA: ENST00000561689.6

CLN3-209, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,957 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-209ENST00000561689 ZFYVE27Q5T4F4 411 aa22.33■■□□□ 1.17
CLN3-209ENST00000561689 FAM117BQ6P1L5 589 aa22.33■■□□□ 1.17
CLN3-209ENST00000561689 KATNAL2Q8IYT4 538 aa22.33■■□□□ 1.17
CLN3-209ENST00000561689 KCTD13Q8WZ19 329 aa22.33■■□□□ 1.17
CLN3-209ENST00000561689 LRRC4Q9HBW1 653 aa22.33■■□□□ 1.17
CLN3-209ENST00000561689 ABHD14A-ACY1A0A1B0GW23 586 aa22.32■■□□□ 1.16
CLN3-209ENST00000561689 CCDC14Q49A88 953 aa22.32■■□□□ 1.16
CLN3-209ENST00000561689 RAB6CQ53S08 254 aa22.32■■□□□ 1.16
CLN3-209ENST00000561689 VARS2Q5ST30 1063 aaKnown RBP22.32■■□□□ 1.16
CLN3-209ENST00000561689 MFSD5Q6N075 450 aa22.32■■□□□ 1.16
CLN3-209ENST00000561689 FBXO38Q6PIJ6 1188 aa22.32■■□□□ 1.16
CLN3-209ENST00000561689 SLC13A5Q86YT5 568 aaPredicted RBP22.32■■□□□ 1.16
CLN3-209ENST00000561689 CCDC50Q8IVM0 306 aa22.32■■□□□ 1.16
CLN3-209ENST00000561689 TMEM175Q9BSA9 504 aa22.32■■□□□ 1.16
CLN3-209ENST00000561689 CNPY3Q9BT09 278 aa22.32■■□□□ 1.16
CLN3-209ENST00000561689 PLVAPQ9BX97 442 aa22.32■■□□□ 1.16
CLN3-209ENST00000561689 RAB6CQ9H0N0 254 aa22.32■■□□□ 1.16
CLN3-209ENST00000561689 DDX47Q9H0S4 455 aaKnown RBP22.32■■□□□ 1.16
CLN3-209ENST00000561689 PLEKHA4Q9H4M7 779 aa22.32■■□□□ 1.16
CLN3-209ENST00000561689 ZWILCHQ9H900 591 aa22.32■■□□□ 1.16
CLN3-209ENST00000561689 PCSK1NQ9UHG2 260 aa22.32■■□□□ 1.16
CLN3-209ENST00000561689 TSC2P49815 1807 aa22.32■■□□□ 1.16
CLN3-209ENST00000561689 PI4K2BG5E9Z4 385 aa22.32■■□□□ 1.16
CLN3-209ENST00000561689 ZMYND10O75800 440 aa22.32■■□□□ 1.16
CLN3-209ENST00000561689 ZRANB2O95218 330 aaKnown RBP eCLIP22.32■■□□□ 1.16
CLN3-209ENST00000561689 DEFB103AP81534 67 aa22.32■■□□□ 1.16
CLN3-209ENST00000561689 ATP11AP98196 1134 aa22.32■■□□□ 1.16
CLN3-209ENST00000561689 SLC7A5Q01650 507 aa22.32■■□□□ 1.16
CLN3-209ENST00000561689 ADCY1Q08828 1119 aa22.32■■□□□ 1.16
CLN3-209ENST00000561689 CDO1Q16878 200 aa22.32■■□□□ 1.16
CLN3-209ENST00000561689 LRRC38Q5VT99 294 aa22.32■■□□□ 1.16
CLN3-209ENST00000561689 C8orf74Q6P047 294 aa22.32■■□□□ 1.16
CLN3-209ENST00000561689 SLC26A9Q7LBE3 791 aa22.32■■□□□ 1.16
CLN3-209ENST00000561689 GPRIN1Q7Z2K8 1008 aa22.32■■□□□ 1.16
CLN3-209ENST00000561689 ZDHHC14Q8IZN3 488 aa22.32■■□□□ 1.16
CLN3-209ENST00000561689 SIX6OS1Q8N1H7 587 aa22.32■■□□□ 1.16
CLN3-209ENST00000561689 BCL7CQ8WUZ0 217 aaPredicted RBP22.32■■□□□ 1.16
CLN3-209ENST00000561689 TOP1MTQ969P6 601 aa22.32■■□□□ 1.16
CLN3-209ENST00000561689 RNF25Q96BH1 459 aaPredicted RBP22.32■■□□□ 1.16
CLN3-209ENST00000561689 ASNSD1Q9NWL6 643 aa22.32■■□□□ 1.16
CLN3-209ENST00000561689 SYN3O14994 580 aa22.31■■□□□ 1.16
CLN3-209ENST00000561689 RNF8O76064 485 aa22.31■■□□□ 1.16
CLN3-209ENST00000561689 IL1R2P27930 398 aa22.31■■□□□ 1.16
CLN3-209ENST00000561689 TKTL1P51854 596 aa22.31■■□□□ 1.16
CLN3-209ENST00000561689 SLC25A11Q02978 314 aaKnown RBP22.31■■□□□ 1.16
CLN3-209ENST00000561689 MAPRE1Q15691 268 aaKnown RBP22.31■■□□□ 1.16
CLN3-209ENST00000561689 SMTNL2Q2TAL5 461 aa22.31■■□□□ 1.16
CLN3-209ENST00000561689 SLC39A12Q504Y0 691 aa22.31■■□□□ 1.16
CLN3-209ENST00000561689 CCDC70Q6NSX1 233 aa22.31■■□□□ 1.16
CLN3-209ENST00000561689 TMEM199Q8N511 208 aa22.31■■□□□ 1.16
CLN3-209ENST00000561689 SF3B1O75533 1304 aaKnown RBP eCLIP22.31■■□□□ 1.163e-9■■■■■ 164.7
CLN3-209ENST00000561689 MIPP30301 263 aa22.3■■□□□ 1.16
CLN3-209ENST00000561689 SDC4P31431 198 aa22.3■■□□□ 1.16
CLN3-209ENST00000561689 SMC1AQ14683 1233 aaKnown RBP22.3■■□□□ 1.16
CLN3-209ENST00000561689 CLUL1Q15846 466 aa22.3■■□□□ 1.16
CLN3-209ENST00000561689 KCTD19Q17RG1 926 aaPredicted RBP22.3■■□□□ 1.16
CLN3-209ENST00000561689 KCNT1Q5JUK3 1230 aa22.3■■□□□ 1.16
CLN3-209ENST00000561689 FUT10Q6P4F1 479 aa22.3■■□□□ 1.16
CLN3-209ENST00000561689 ANKS1BQ7Z6G8 1248 aa22.3■■□□□ 1.16
CLN3-209ENST00000561689 EXD1Q8NHP7 514 aa22.3■■□□□ 1.16
CLN3-209ENST00000561689 HERPUD2Q9BSE4 406 aa22.3■■□□□ 1.16
CLN3-209ENST00000561689 HEMGNQ9BXL5 484 aa22.3■■□□□ 1.16
CLN3-209ENST00000561689 CSNK1G1Q9HCP0 422 aa22.3■■□□□ 1.16
CLN3-209ENST00000561689 CCDC188H7C350 402 aa22.3■■□□□ 1.16
CLN3-209ENST00000561689 CAPN15O75808 1086 aa22.3■■□□□ 1.16
CLN3-209ENST00000561689 AMHP03971 560 aa22.3■■□□□ 1.16
CLN3-209ENST00000561689 KRT1P04264 644 aa22.3■■□□□ 1.16
CLN3-209ENST00000561689 H2AFXP16104 143 aaPredicted RBP22.3■■□□□ 1.16
CLN3-209ENST00000561689 VSNL1P62760 191 aa22.3■■□□□ 1.16
CLN3-209ENST00000561689 MRPS5P82675 430 aaKnown RBP22.3■■□□□ 1.16
CLN3-209ENST00000561689 ACAP1Q15027 740 aa22.3■■□□□ 1.16
CLN3-209ENST00000561689 SPATA2LQ8IUW3 424 aaPredicted RBP22.3■■□□□ 1.16
CLN3-209ENST00000561689 RAPGEF5Q92565 580 aa22.3■■□□□ 1.16
CLN3-209ENST00000561689 FAM149B1Q96BN6 582 aa22.3■■□□□ 1.16
CLN3-209ENST00000561689 ZCWPW1Q9H0M4 648 aa22.3■■□□□ 1.16
CLN3-209ENST00000561689 DMGDHQ9UI17 866 aaKnown RBP22.3■■□□□ 1.16
CLN3-209ENST00000561689 MICAL3Q7RTP6 2002 aa22.29■■□□□ 1.16
CLN3-209ENST00000561689 GOLGA6L10A0A0M3HER8 536 aa22.29■■□□□ 1.16
CLN3-209ENST00000561689 HHLA1C9JL84 531 aa22.29■■□□□ 1.16
CLN3-209ENST00000561689 DPYSL4O14531 572 aa22.29■■□□□ 1.16
CLN3-209ENST00000561689 SART1O43290 800 aaKnown RBP22.29■■□□□ 1.16
CLN3-209ENST00000561689 RALAP11233 206 aa22.29■■□□□ 1.16
CLN3-209ENST00000561689 TFE3P19532 575 aaPredicted RBP22.29■■□□□ 1.16
CLN3-209ENST00000561689 SCNN1AP37088 669 aa22.29■■□□□ 1.16
CLN3-209ENST00000561689 ALDH7A1P49419 539 aaKnown RBP22.29■■□□□ 1.16
CLN3-209ENST00000561689 HADHQ16836 314 aaKnown RBP22.29■■□□□ 1.16
CLN3-209ENST00000561689 CTXN3Q4LDR2 81 aa22.29■■□□□ 1.16
CLN3-209ENST00000561689 TAS1R1Q7RTX1 841 aa22.29■■□□□ 1.16
CLN3-209ENST00000561689 ULBP1Q9BZM6 244 aa22.29■■□□□ 1.16
CLN3-209ENST00000561689 CWH43Q9H720 699 aa22.29■■□□□ 1.16
CLN3-209ENST00000561689 RARAP10276 462 aa22.29■■□□□ 1.16
CLN3-209ENST00000561689 CAPN2P17655 700 aa22.29■■□□□ 1.16
CLN3-209ENST00000561689 FGFR3P22607 806 aa22.29■■□□□ 1.16
CLN3-209ENST00000561689 CYP2F1P24903 491 aa22.29■■□□□ 1.16
CLN3-209ENST00000561689 WDR5P61964 334 aaKnown RBP22.29■■□□□ 1.16
CLN3-209ENST00000561689 EFHC1Q5JVL4 640 aa22.29■■□□□ 1.16
CLN3-209ENST00000561689 OTOP2Q7RTS6 562 aa22.29■■□□□ 1.16
CLN3-209ENST00000561689 UBE2Q1Q7Z7E8 422 aa22.29■■□□□ 1.16
CLN3-209ENST00000561689 RCOR2Q8IZ40 523 aa22.29■■□□□ 1.16
CLN3-209ENST00000561689 FAM172AQ8WUF8 416 aa22.29■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms