RNA–Protein interactions for RNA: ENST00000560541.5

CUX1-218, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 3,176 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-218ENST00000560541 TMEM35BQ8NCS4 154 aa11.83□□□□□ -0.52
CUX1-218ENST00000560541 SLC35B2Q8TB61 432 aa11.83□□□□□ -0.52
CUX1-218ENST00000560541 STK32AQ8WU08 396 aa11.83□□□□□ -0.52
CUX1-218ENST00000560541 SLC7A3Q8WY07 619 aa11.83□□□□□ -0.52
CUX1-218ENST00000560541 NKD2Q969F2 451 aaPredicted RBP11.83□□□□□ -0.52
CUX1-218ENST00000560541 PORCNQ9H237 461 aa11.83□□□□□ -0.52
CUX1-218ENST00000560541 ETNK2Q9NVF9 386 aa11.83□□□□□ -0.52
CUX1-218ENST00000560541 MAP3K20Q9NYL2 800 aaKnown RBP11.83□□□□□ -0.52
CUX1-218ENST00000560541 KANSL3Q9P2N6 904 aa11.83□□□□□ -0.52
CUX1-218ENST00000560541 SLC24A2Q9UI40 661 aa11.83□□□□□ -0.52
CUX1-218ENST00000560541 ZNF180Q9UJW8 692 aa11.83□□□□□ -0.52
CUX1-218ENST00000560541 BARX2Q9UMQ3 279 aaPredicted RBP11.83□□□□□ -0.52
CUX1-218ENST00000560541 DRG1Q9Y295 367 aaKnown RBP11.83□□□□□ -0.52
CUX1-218ENST00000560541 FARP1Q9Y4F1 1045 aaPredicted RBP11.83□□□□□ -0.52
CUX1-218ENST00000560541 STYXL1Q9Y6J8 313 aa11.83□□□□□ -0.52
CUX1-218ENST00000560541 TCRBV5S1A1TA0A578 114 aa11.82□□□□□ -0.52
CUX1-218ENST00000560541 TRIM43BA6NCK2 446 aa11.82□□□□□ -0.52
CUX1-218ENST00000560541 DKC1O60832 514 aaKnown RBP eCLIP11.82□□□□□ -0.521e-8■■■■■ 28.8
CUX1-218ENST00000560541 STAM2O75886 525 aa11.82□□□□□ -0.52
CUX1-218ENST00000560541 SUPT20HL2P0C7V6 817 aa11.82□□□□□ -0.52
CUX1-218ENST00000560541 ERFP50548 548 aa11.82□□□□□ -0.52
CUX1-218ENST00000560541 ZNF132P52740 706 aa11.82□□□□□ -0.52
CUX1-218ENST00000560541 ARL4CP56559 192 aa11.82□□□□□ -0.52
CUX1-218ENST00000560541 TMED1Q13445 227 aa11.82□□□□□ -0.52
CUX1-218ENST00000560541 CCDC142Q17RM4 750 aa11.82□□□□□ -0.52
CUX1-218ENST00000560541 SUPT20HL1Q3ZLR7 823 aa11.82□□□□□ -0.52
CUX1-218ENST00000560541 FKBP1CQ5VVH2 108 aa11.82□□□□□ -0.52
CUX1-218ENST00000560541 DENND1BQ6P3S1 775 aa11.82□□□□□ -0.52
CUX1-218ENST00000560541 NCCRP1Q6ZVX7 275 aaPredicted RBP11.82□□□□□ -0.52
CUX1-218ENST00000560541 IGDCC3Q8IVU1 814 aa11.82□□□□□ -0.52
CUX1-218ENST00000560541 ARFGAP1Q8N6T3 406 aa11.82□□□□□ -0.52
CUX1-218ENST00000560541 HSPH1Q92598 858 aa11.82□□□□□ -0.52
CUX1-218ENST00000560541 TTC17Q96AE7 1141 aa11.82□□□□□ -0.52
CUX1-218ENST00000560541 VCXQ9H320 206 aa11.82□□□□□ -0.52
CUX1-218ENST00000560541 MYOZ2Q9NPC6 264 aa11.82□□□□□ -0.52
CUX1-218ENST00000560541 ZNF302Q9NR11 478 aa11.82□□□□□ -0.52
CUX1-218ENST00000560541 XPO7Q9UIA9 1087 aaKnown RBP11.82□□□□□ -0.52
CUX1-218ENST00000560541 H0YCG3 227 aa11.82□□□□□ -0.52
CUX1-218ENST00000560541 LRCH4O75427 683 aa11.82□□□□□ -0.52
CUX1-218ENST00000560541 LDHAP00338 332 aaKnown RBP11.82□□□□□ -0.52
CUX1-218ENST00000560541 ASS1P00966 412 aaKnown RBP11.82□□□□□ -0.52
CUX1-218ENST00000560541 GNAZP19086 355 aa11.82□□□□□ -0.52
CUX1-218ENST00000560541 HMGCS2P54868 508 aa11.82□□□□□ -0.52
CUX1-218ENST00000560541 TGFB2P61812 414 aa11.82□□□□□ -0.52
CUX1-218ENST00000560541 CXCL9Q07325 125 aa11.82□□□□□ -0.52
CUX1-218ENST00000560541 PTPN20Q4JDL3 420 aa11.82□□□□□ -0.52
CUX1-218ENST00000560541 DPH6Q7L8W6 267 aa11.82□□□□□ -0.52
CUX1-218ENST00000560541 APBB1IPQ7Z5R6 666 aaPredicted RBP11.82□□□□□ -0.52
CUX1-218ENST00000560541 PPIL6Q8IXY8 311 aa11.82□□□□□ -0.52
CUX1-218ENST00000560541 ZBTB8BQ8NAP8 495 aaPredicted RBP11.82□□□□□ -0.52
CUX1-218ENST00000560541 INPP5DQ92835 1189 aa11.82□□□□□ -0.52
CUX1-218ENST00000560541 DDX50Q9BQ39 737 aaKnown RBP11.82□□□□□ -0.52
CUX1-218ENST00000560541 CALN1Q9BXU9 219 aa11.82□□□□□ -0.52
CUX1-218ENST00000560541 HEY2Q9UBP5 337 aa11.82□□□□□ -0.52
CUX1-218ENST00000560541 CNTN6Q9UQ52 1028 aa11.82□□□□□ -0.52
CUX1-218ENST00000560541 C3orf70A6NLC5 250 aaPredicted RBP11.81□□□□□ -0.52
CUX1-218ENST00000560541 PIK3R2O00459 728 aa11.81□□□□□ -0.52
CUX1-218ENST00000560541 AVILO75366 819 aa11.81□□□□□ -0.52
CUX1-218ENST00000560541 TMCC1O94876 653 aa11.81□□□□□ -0.52
CUX1-218ENST00000560541 ZWINTO95229 277 aa11.81□□□□□ -0.52
CUX1-218ENST00000560541 TROVE2P10155 538 aaKnown RBP eCLIP11.81□□□□□ -0.52
CUX1-218ENST00000560541 PHBP35232 272 aa11.81□□□□□ -0.52
CUX1-218ENST00000560541 PTDSS1P48651 473 aaKnown RBP11.81□□□□□ -0.52
CUX1-218ENST00000560541 PIGHQ14442 188 aaPredicted RBP11.81□□□□□ -0.52
CUX1-218ENST00000560541 SLFN12LQ6IEE8 588 aa11.81□□□□□ -0.52
CUX1-218ENST00000560541 DPY19L2Q6NUT2 758 aa11.81□□□□□ -0.52
CUX1-218ENST00000560541 DSTYKQ6XUX3 929 aa11.81□□□□□ -0.52
CUX1-218ENST00000560541 ZC3H18Q86VM9 953 aaKnown RBP11.81□□□□□ -0.52
CUX1-218ENST00000560541 LRRN4Q8WUT4 740 aa11.81□□□□□ -0.52
CUX1-218ENST00000560541 TEPSINQ96N21 525 aa11.81□□□□□ -0.52
CUX1-218ENST00000560541 FAM111AQ96PZ2 611 aa11.81□□□□□ -0.52
CUX1-218ENST00000560541 PDGFDQ9GZP0 370 aaPredicted RBP11.81□□□□□ -0.52
CUX1-218ENST00000560541 MANSC1Q9H8J5 431 aa11.81□□□□□ -0.52
CUX1-218ENST00000560541 DMAP1Q9NPF5 467 aaPredicted RBP11.81□□□□□ -0.52
CUX1-218ENST00000560541 CYLDQ9NQC7 956 aa11.81□□□□□ -0.52
CUX1-218ENST00000560541 ARL8BQ9NVJ2 186 aa11.81□□□□□ -0.52
CUX1-218ENST00000560541 CYTH4Q9UIA0 394 aa11.81□□□□□ -0.52
CUX1-218ENST00000560541 ARID2Q68CP9 1835 aa11.81□□□□□ -0.52
CUX1-218ENST00000560541 C2CD2LO14523 706 aa11.81□□□□□ -0.52
CUX1-218ENST00000560541 WFS1O76024 890 aa11.81□□□□□ -0.52
CUX1-218ENST00000560541 SRGAP2CP0DJJ0 459 aa11.81□□□□□ -0.52
CUX1-218ENST00000560541 KRT3P12035 628 aa11.81□□□□□ -0.52
CUX1-218ENST00000560541 SERPINB3P29508 390 aa11.81□□□□□ -0.52
CUX1-218ENST00000560541 NAMPTP43490 491 aa11.81□□□□□ -0.52
CUX1-218ENST00000560541 ZBTB16Q05516 673 aa11.81□□□□□ -0.52
CUX1-218ENST00000560541 CAPSQ13938 189 aa11.81□□□□□ -0.52
CUX1-218ENST00000560541 LRRC38Q5VT99 294 aa11.81□□□□□ -0.52
CUX1-218ENST00000560541 NPNTQ6UXI9 565 aa11.81□□□□□ -0.52
CUX1-218ENST00000560541 RFX8Q6ZV50 586 aa11.81□□□□□ -0.52
CUX1-218ENST00000560541 TTC7BQ86TV6 843 aa11.81□□□□□ -0.52
CUX1-218ENST00000560541 RFX6Q8HWS3 928 aa11.81□□□□□ -0.52
CUX1-218ENST00000560541 NAT8LQ8N9F0 302 aa11.81□□□□□ -0.52
CUX1-218ENST00000560541 CLMNQ96JQ2 1002 aa11.81□□□□□ -0.52
CUX1-218ENST00000560541 NR1H4Q96RI1 486 aaPredicted RBP11.81□□□□□ -0.52
CUX1-218ENST00000560541 SRPK1Q96SB4 655 aaKnown RBP11.81□□□□□ -0.52
CUX1-218ENST00000560541 SYNCQ9H7C4 482 aa11.81□□□□□ -0.52
CUX1-218ENST00000560541 POLIQ9UNA4 740 aa11.81□□□□□ -0.52
CUX1-218ENST00000560541 SNCAIPQ9Y6H5 919 aa11.81□□□□□ -0.52
CUX1-218ENST00000560541 LPXNO60711 386 aa11.81□□□□□ -0.52
CUX1-218ENST00000560541 MAP3K6O95382 1288 aa11.81□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms