RNA–Protein interactions for RNA: ENST00000560467.1

LDLR-212, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 928 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-212ENST00000560467 C1orf127Q8N9H9 656 aa12.52□□□□□ -0.41
LDLR-212ENST00000560467 TC2NQ8N9U0 490 aa12.52□□□□□ -0.41
LDLR-212ENST00000560467 SEMA4DQ92854 862 aa12.52□□□□□ -0.41
LDLR-212ENST00000560467 SMARCD2Q92925 531 aa12.52□□□□□ -0.41
LDLR-212ENST00000560467 MMS19Q96T76 1030 aa12.52□□□□□ -0.41
LDLR-212ENST00000560467 PI4K2AQ9BTU6 479 aa12.52□□□□□ -0.41
LDLR-212ENST00000560467 TRMT61BQ9BVS5 477 aaKnown RBP12.52□□□□□ -0.41
LDLR-212ENST00000560467 GANQ9H2C0 597 aa12.52□□□□□ -0.41
LDLR-212ENST00000560467 PDCL3Q9H2J4 239 aa12.52□□□□□ -0.41
LDLR-212ENST00000560467 CYP3A43Q9HB55 503 aa12.52□□□□□ -0.41
LDLR-212ENST00000560467 NUB1Q9Y5A7 615 aa12.52□□□□□ -0.41
LDLR-212ENST00000560467 FHOD1Q9Y613 1164 aa12.52□□□□□ -0.41
LDLR-212ENST00000560467 PIAS3Q9Y6X2 628 aa12.52□□□□□ -0.41
LDLR-212ENST00000560467 MIA3Q5JRA6 1907 aa12.51□□□□□ -0.41
LDLR-212ENST00000560467 PRR5-ARHGAP8B1AHC4 643 aa12.51□□□□□ -0.41
LDLR-212ENST00000560467 MAN2B1O00754 1011 aa12.51□□□□□ -0.41
LDLR-212ENST00000560467 SYN3O14994 580 aa12.51□□□□□ -0.41
LDLR-212ENST00000560467 ARHGAP6O43182 974 aa12.51□□□□□ -0.41
LDLR-212ENST00000560467 AKR1B10O60218 316 aa12.51□□□□□ -0.41
LDLR-212ENST00000560467 NOL4O94818 638 aa12.51□□□□□ -0.41
LDLR-212ENST00000560467 VNN1O95497 513 aa12.51□□□□□ -0.41
LDLR-212ENST00000560467 STAU1O95793 577 aaKnown RBP12.51□□□□□ -0.41
LDLR-212ENST00000560467 CST3P01034 146 aaPredicted RBP12.51□□□□□ -0.41
LDLR-212ENST00000560467 MYL4P12829 197 aa12.51□□□□□ -0.41
LDLR-212ENST00000560467 ATF2P15336 505 aa12.51□□□□□ -0.41
LDLR-212ENST00000560467 SDHBP21912 280 aa12.51□□□□□ -0.41
LDLR-212ENST00000560467 ANXA13P27216 316 aa12.51□□□□□ -0.41
LDLR-212ENST00000560467 TAF6P49848 677 aa12.51□□□□□ -0.41
LDLR-212ENST00000560467 ARHGAP8P85298 464 aa12.51□□□□□ -0.41
LDLR-212ENST00000560467 CDK17Q00537 523 aa12.51□□□□□ -0.41
LDLR-212ENST00000560467 SATB1Q01826 763 aa12.51□□□□□ -0.41
LDLR-212ENST00000560467 PTK2Q05397 1052 aa12.51□□□□□ -0.41
LDLR-212ENST00000560467 SPEM2Q0P670 501 aa12.51□□□□□ -0.41
LDLR-212ENST00000560467 TWF1Q12792 350 aa12.51□□□□□ -0.41
LDLR-212ENST00000560467 MRPL58Q14197 206 aaKnown RBP12.51□□□□□ -0.41
LDLR-212ENST00000560467 ZBTB6Q15916 424 aa12.51□□□□□ -0.41
LDLR-212ENST00000560467 CTXN3Q4LDR2 81 aa12.51□□□□□ -0.41
LDLR-212ENST00000560467 TDRD12Q587J7 1177 aaKnown RBP12.51□□□□□ -0.41
LDLR-212ENST00000560467 C9orf57Q5W0N0 161 aa12.51□□□□□ -0.41
LDLR-212ENST00000560467 CCDC170Q8IYT3 715 aa12.51□□□□□ -0.41
LDLR-212ENST00000560467 LMO3Q8TAP4 145 aa12.51□□□□□ -0.41
LDLR-212ENST00000560467 FAM3CQ92520 227 aa12.51□□□□□ -0.41
LDLR-212ENST00000560467 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP12.51□□□□□ -0.41
LDLR-212ENST00000560467 FAM126AQ9BYI3 521 aaPredicted RBP12.51□□□□□ -0.41
LDLR-212ENST00000560467 TTYH3Q9C0H2 523 aa12.51□□□□□ -0.41
LDLR-212ENST00000560467 LMAN1LQ9HAT1 526 aa12.51□□□□□ -0.41
LDLR-212ENST00000560467 ZNF334Q9HCZ1 680 aaPredicted RBP12.51□□□□□ -0.41
LDLR-212ENST00000560467 SIX2Q9NPC8 291 aa12.51□□□□□ -0.41
LDLR-212ENST00000560467 UTP3Q9NQZ2 479 aaKnown RBP eCLIP12.51□□□□□ -0.415e-7■■■■■ 26.9
LDLR-212ENST00000560467 AIPL1Q9NZN9 384 aa12.51□□□□□ -0.41
LDLR-212ENST00000560467 PCDHB4Q9Y5E5 795 aa12.51□□□□□ -0.41
LDLR-212ENST00000560467 DYNC1LI1Q9Y6G9 523 aaKnown RBP12.51□□□□□ -0.41
LDLR-212ENST00000560467 PTPRJQ12913 1337 aa12.51□□□□□ -0.41
LDLR-212ENST00000560467 PATJQ8NI35 1801 aa12.51□□□□□ -0.41
LDLR-212ENST00000560467 F8VZ95 297 aa12.5□□□□□ -0.41
LDLR-212ENST00000560467 H7C4K7 107 aa12.5□□□□□ -0.41
LDLR-212ENST00000560467 ZNF197O14709 1029 aa12.5□□□□□ -0.41
LDLR-212ENST00000560467 HUS1O60921 280 aa12.5□□□□□ -0.41
LDLR-212ENST00000560467 GFPT2O94808 682 aa12.5□□□□□ -0.41
LDLR-212ENST00000560467 MICAL2O94851 1124 aa12.5□□□□□ -0.41
LDLR-212ENST00000560467 PSMC3P17980 439 aa12.5□□□□□ -0.41
LDLR-212ENST00000560467 LRPAP1P30533 357 aa12.5□□□□□ -0.41
LDLR-212ENST00000560467 HNRNPH3P31942 346 aaKnown RBP12.5□□□□□ -0.41
LDLR-212ENST00000560467 WNT7BP56706 349 aa12.5□□□□□ -0.41
LDLR-212ENST00000560467 KRT83P78385 493 aa12.5□□□□□ -0.41
LDLR-212ENST00000560467 DMWDQ09019 674 aa12.5□□□□□ -0.41
LDLR-212ENST00000560467 GAS6Q14393 721 aa12.5□□□□□ -0.41
LDLR-212ENST00000560467 TEAD2Q15562 447 aa12.5□□□□□ -0.41
LDLR-212ENST00000560467 CYP4A22Q5TCH4 519 aa12.5□□□□□ -0.41
LDLR-212ENST00000560467 ZNF280DQ6N043 979 aa12.5□□□□□ -0.41
LDLR-212ENST00000560467 PRR23BQ6ZRT6 265 aa12.5□□□□□ -0.41
LDLR-212ENST00000560467 METTL23Q86XA0 190 aa12.5□□□□□ -0.41
LDLR-212ENST00000560467 ZSCAN18Q8TBC5 510 aaPredicted RBP12.5□□□□□ -0.41
LDLR-212ENST00000560467 IRF7Q92985 503 aa12.5□□□□□ -0.41
LDLR-212ENST00000560467 TATDN2Q93075 761 aa12.5□□□□□ -0.41
LDLR-212ENST00000560467 RSPRY1Q96DX4 576 aa12.5□□□□□ -0.41
LDLR-212ENST00000560467 RTKNQ9BST9 563 aa12.5□□□□□ -0.41
LDLR-212ENST00000560467 SNX25Q9H3E2 840 aa12.5□□□□□ -0.41
LDLR-212ENST00000560467 VRTNQ9H8Y1 702 aa12.5□□□□□ -0.41
LDLR-212ENST00000560467 TUBGCP4Q9UGJ1 667 aa12.5□□□□□ -0.41
LDLR-212ENST00000560467 RAB23Q9ULC3 237 aa12.5□□□□□ -0.41
LDLR-212ENST00000560467 KPNA7A9QM74 516 aa12.49□□□□□ -0.41
LDLR-212ENST00000560467 ARNTLO00327 626 aa12.49□□□□□ -0.41
LDLR-212ENST00000560467 EPHB6O15197 1021 aa12.49□□□□□ -0.41
LDLR-212ENST00000560467 ZSCAN12O43309 604 aa12.49□□□□□ -0.41
LDLR-212ENST00000560467 FAM163BP0C2L3 166 aa12.49□□□□□ -0.41
LDLR-212ENST00000560467 TNFAIP3P21580 790 aa12.49□□□□□ -0.41
LDLR-212ENST00000560467 SOX9P48436 509 aa12.49□□□□□ -0.41
LDLR-212ENST00000560467 PDE6CP51160 858 aa12.49□□□□□ -0.41
LDLR-212ENST00000560467 CCR3P51677 355 aa12.49□□□□□ -0.41
LDLR-212ENST00000560467 SRSF5Q13243 272 aaKnown RBP12.49□□□□□ -0.41
LDLR-212ENST00000560467 ARID5BQ14865 1188 aa12.49□□□□□ -0.41
LDLR-212ENST00000560467 TPGS2Q68CL5 300 aa12.49□□□□□ -0.41
LDLR-212ENST00000560467 LAIR1Q6GTX8 287 aa12.49□□□□□ -0.41
LDLR-212ENST00000560467 GJB7Q6PEY0 223 aa12.49□□□□□ -0.41
LDLR-212ENST00000560467 DSTYKQ6XUX3 929 aa12.49□□□□□ -0.41
LDLR-212ENST00000560467 RNF19BQ6ZMZ0 732 aa12.49□□□□□ -0.41
LDLR-212ENST00000560467 DPH6Q7L8W6 267 aa12.49□□□□□ -0.41
LDLR-212ENST00000560467 ARHGEF19Q8IW93 802 aa12.49□□□□□ -0.41
LDLR-212ENST00000560467 ELMOD1Q8N336 334 aa12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms