RNA–Protein interactions for RNA: ENST00000559711.5

USP3-213, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5 BASIC

Gene USP3, Length 1,693 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-213ENST00000559711 LLGL1Q15334 1064 aa13.31□□□□□ -0.28
USP3-213ENST00000559711 CCNG2Q16589 344 aa13.31□□□□□ -0.28
USP3-213ENST00000559711 FAM171BQ6P995 826 aa13.31□□□□□ -0.28
USP3-213ENST00000559711 SLC39A5Q6ZMH5 540 aa13.31□□□□□ -0.28
USP3-213ENST00000559711 SPOCD1Q6ZMY3 1216 aa13.31□□□□□ -0.28
USP3-213ENST00000559711 CLEC20AQ6ZU45 233 aa13.31□□□□□ -0.28
USP3-213ENST00000559711 ZNF280BQ86YH2 543 aa13.31□□□□□ -0.28
USP3-213ENST00000559711 COLGALT2Q8IYK4 626 aa13.31□□□□□ -0.28
USP3-213ENST00000559711 SEPT8Q92599 483 aa13.31□□□□□ -0.28
USP3-213ENST00000559711 TOX2Q96NM4 488 aa13.31□□□□□ -0.28
USP3-213ENST00000559711 NCAPGQ9BPX3 1015 aa13.31□□□□□ -0.28
USP3-213ENST00000559711 UBXN6Q9BZV1 441 aa13.31□□□□□ -0.28
USP3-213ENST00000559711 DCLK3Q9C098 648 aa13.31□□□□□ -0.28
USP3-213ENST00000559711 FAM114A2Q9NRY5 505 aa13.31□□□□□ -0.28
USP3-213ENST00000559711 RASAL2Q9UJF2 1139 aa13.31□□□□□ -0.28
USP3-213ENST00000559711 USP18Q9UMW8 372 aa13.31□□□□□ -0.28
USP3-213ENST00000559711 hCG_1818297A0A087WSY0 165 aa13.31□□□□□ -0.28
USP3-213ENST00000559711 I3L4J1 428 aa13.31□□□□□ -0.28
USP3-213ENST00000559711 GRAP2O75791 330 aa13.31□□□□□ -0.28
USP3-213ENST00000559711 TJP3O95049 919 aa13.31□□□□□ -0.28
USP3-213ENST00000559711 PARNO95453 639 aaKnown RBP13.31□□□□□ -0.28
USP3-213ENST00000559711 CXCL10P02778 98 aa13.31□□□□□ -0.28
USP3-213ENST00000559711 ITGB1P05556 798 aa13.31□□□□□ -0.28
USP3-213ENST00000559711 FAM200BP0CF97 657 aa13.31□□□□□ -0.28
USP3-213ENST00000559711 LCP1P13796 627 aa13.31□□□□□ -0.28
USP3-213ENST00000559711 PTPN9P43378 593 aa13.31□□□□□ -0.28
USP3-213ENST00000559711 PAN2Q504Q3 1202 aaKnown RBP13.31□□□□□ -0.28
USP3-213ENST00000559711 TFDP3Q5H9I0 405 aa13.31□□□□□ -0.28
USP3-213ENST00000559711 SH3PXD2AQ5TCZ1 1133 aa13.31□□□□□ -0.28
USP3-213ENST00000559711 C1orf53Q5VUE5 145 aa13.31□□□□□ -0.28
USP3-213ENST00000559711 CCDC105Q8IYK2 499 aa13.31□□□□□ -0.28
USP3-213ENST00000559711 C1orf54Q8WWF1 131 aa13.31□□□□□ -0.28
USP3-213ENST00000559711 PCED1BQ96HM7 432 aa13.31□□□□□ -0.28
USP3-213ENST00000559711 MED10Q9BTT4 135 aa13.31□□□□□ -0.28
USP3-213ENST00000559711 C11orf84Q9BUA3 381 aaPredicted RBP13.31□□□□□ -0.28
USP3-213ENST00000559711 CHST7Q9NS84 486 aa13.31□□□□□ -0.28
USP3-213ENST00000559711 TBC1D13Q9NVG8 400 aa13.31□□□□□ -0.28
USP3-213ENST00000559711 KLHL11Q9NVR0 708 aa13.31□□□□□ -0.28
USP3-213ENST00000559711 FEZ2Q9UHY8 353 aaPredicted RBP13.31□□□□□ -0.28
USP3-213ENST00000559711 LRRD1A4D1F6 860 aa13.3□□□□□ -0.28
USP3-213ENST00000559711 DAPK3O43293 454 aa13.3□□□□□ -0.28
USP3-213ENST00000559711 BEST1O76090 585 aa13.3□□□□□ -0.28
USP3-213ENST00000559711 ENDOD1O94919 500 aa13.3□□□□□ -0.28
USP3-213ENST00000559711 KDELR1P24390 212 aa13.3□□□□□ -0.28
USP3-213ENST00000559711 SDC4P31431 198 aa13.3□□□□□ -0.28
USP3-213ENST00000559711 KCNJ1P48048 391 aa13.3□□□□□ -0.28
USP3-213ENST00000559711 ADCY2Q08462 1091 aa13.3□□□□□ -0.28
USP3-213ENST00000559711 ADCY1Q08828 1119 aa13.3□□□□□ -0.28
USP3-213ENST00000559711 C15orf59Q2T9L4 293 aaPredicted RBP13.3□□□□□ -0.28
USP3-213ENST00000559711 ODF2Q5BJF6 829 aa13.3□□□□□ -0.28
USP3-213ENST00000559711 EFHC1Q5JVL4 640 aa13.3□□□□□ -0.28
USP3-213ENST00000559711 ZFYVE27Q5T4F4 411 aa13.3□□□□□ -0.28
USP3-213ENST00000559711 CYP4V2Q6ZWL3 525 aaPredicted RBP13.3□□□□□ -0.28
USP3-213ENST00000559711 SND1Q7KZF4 910 aaKnown RBP eCLIP13.3□□□□□ -0.28
USP3-213ENST00000559711 FAM35AQ86V20 835 aa13.3□□□□□ -0.28
USP3-213ENST00000559711 CRIPAKQ8N1N5 446 aa13.3□□□□□ -0.28
USP3-213ENST00000559711 CLEC4CQ8WTT0 213 aa13.3□□□□□ -0.28
USP3-213ENST00000559711 CENPIQ92674 756 aaPredicted RBP13.3□□□□□ -0.28
USP3-213ENST00000559711 CFAP57Q96MR6 1250 aa13.3□□□□□ -0.28
USP3-213ENST00000559711 PKMYT1Q99640 499 aa13.3□□□□□ -0.28
USP3-213ENST00000559711 TRIM51Q9BSJ1 452 aa13.3□□□□□ -0.28
USP3-213ENST00000559711 DDX23Q9BUQ8 820 aaKnown RBP13.3□□□□□ -0.28
USP3-213ENST00000559711 ZWILCHQ9H900 591 aa13.3□□□□□ -0.28
USP3-213ENST00000559711 PCDHB8Q9UN66 801 aa13.3□□□□□ -0.28
USP3-213ENST00000559711 R3HDM2Q9Y2K5 976 aaKnown RBP13.3□□□□□ -0.28
USP3-213ENST00000559711 PCDHB7Q9Y5E2 793 aa13.3□□□□□ -0.28
USP3-213ENST00000559711 DCDC2CA8MYV0 355 aa13.29□□□□□ -0.28
USP3-213ENST00000559711 F8W810 466 aa13.29□□□□□ -0.28
USP3-213ENST00000559711 AP1G2O75843 785 aa13.29□□□□□ -0.28
USP3-213ENST00000559711 ECEL1O95672 775 aa13.29□□□□□ -0.28
USP3-213ENST00000559711 FAM153BP0C7A2 387 aa13.29□□□□□ -0.28
USP3-213ENST00000559711 KRT10P13645 584 aa13.29□□□□□ -0.28
USP3-213ENST00000559711 TNNT3P45378 269 aaPredicted RBP13.29□□□□□ -0.28
USP3-213ENST00000559711 ATN1P54259 1190 aaPredicted RBP13.29□□□□□ -0.28
USP3-213ENST00000559711 FAAP100Q0VG06 881 aa13.29□□□□□ -0.28
USP3-213ENST00000559711 FAM153CQ494X1 144 aa13.29□□□□□ -0.28
USP3-213ENST00000559711 BOLA3Q53S33 107 aa13.29□□□□□ -0.28
USP3-213ENST00000559711 INTS6LQ5JSJ4 861 aaKnown RBP13.29□□□□□ -0.28
USP3-213ENST00000559711 KCNT1Q5JUK3 1230 aa13.29□□□□□ -0.28
USP3-213ENST00000559711 OVOS1Q6IE37 1185 aa13.29□□□□□ -0.28
USP3-213ENST00000559711 DRICH1Q6PGQ1 229 aaPredicted RBP13.29□□□□□ -0.28
USP3-213ENST00000559711 SYDE1Q6ZW31 735 aaPredicted RBP13.29□□□□□ -0.28
USP3-213ENST00000559711 DDX42Q86XP3 938 aaKnown RBP eCLIP13.29□□□□□ -0.28
USP3-213ENST00000559711 THEM5Q8N1Q8 247 aa13.29□□□□□ -0.28
USP3-213ENST00000559711 ATL2Q8NHH9 583 aa13.29□□□□□ -0.28
USP3-213ENST00000559711 HASPINQ8TF76 798 aa13.29□□□□□ -0.28
USP3-213ENST00000559711 ATG4AQ8WYN0 398 aa13.29□□□□□ -0.28
USP3-213ENST00000559711 ACSF2Q96CM8 615 aaPredicted RBP13.29□□□□□ -0.28
USP3-213ENST00000559711 CASD1Q96PB1 797 aa13.29□□□□□ -0.28
USP3-213ENST00000559711 PEBP4Q96S96 227 aa13.29□□□□□ -0.28
USP3-213ENST00000559711 SMOQ99835 787 aa13.29□□□□□ -0.28
USP3-213ENST00000559711 HIPK3Q9H422 1215 aa13.29□□□□□ -0.28
USP3-213ENST00000559711 CSNK1G1Q9HCP0 422 aa13.29□□□□□ -0.28
USP3-213ENST00000559711 KRT82Q9NSB4 513 aa13.29□□□□□ -0.28
USP3-213ENST00000559711 PCSK1NQ9UHG2 260 aa13.29□□□□□ -0.28
USP3-213ENST00000559711 FAM153AQ9UHL3 310 aa13.29□□□□□ -0.28
USP3-213ENST00000559711 PRPSAP2O60256 369 aa13.28□□□□□ -0.28
USP3-213ENST00000559711 HSF2BPO75031 334 aa13.28□□□□□ -0.28
USP3-213ENST00000559711 DESP17661 470 aa13.28□□□□□ -0.28
USP3-213ENST00000559711 GBP1P32455 592 aa13.28□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms