RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 FAM50BQ9Y247 325 aa9.74□□□□□ -0.85
LDLR-210ENST00000559340 CHD7Q9P2D1 2997 aa9.74□□□□□ -0.85
LDLR-210ENST00000559340 NOTCH4Q99466 2003 aa9.73□□□□□ -0.85
LDLR-210ENST00000559340 OBSL1O75147 1896 aa9.73□□□□□ -0.85
LDLR-210ENST00000559340 SOBPA7XYQ1 873 aa9.73□□□□□ -0.85
LDLR-210ENST00000559340 CCL16O15467 120 aa9.73□□□□□ -0.85
LDLR-210ENST00000559340 AKR1B10O60218 316 aa9.73□□□□□ -0.85
LDLR-210ENST00000559340 IPO7O95373 1038 aaKnown RBP9.73□□□□□ -0.85
LDLR-210ENST00000559340 CYP1A1P04798 512 aaPredicted RBP9.73□□□□□ -0.85
LDLR-210ENST00000559340 CALB1P05937 261 aa9.73□□□□□ -0.85
LDLR-210ENST00000559340 PTMAP06454 111 aaKnown RBP9.73□□□□□ -0.85
LDLR-210ENST00000559340 MMEP08473 750 aa9.73□□□□□ -0.85
LDLR-210ENST00000559340 SKILP12757 684 aa9.73□□□□□ -0.85
LDLR-210ENST00000559340 CDC25CP30307 473 aa9.73□□□□□ -0.85
LDLR-210ENST00000559340 GTF2F1P35269 517 aaKnown RBP eCLIP9.73□□□□□ -0.85
LDLR-210ENST00000559340 CYLC1P35663 651 aaPredicted RBP9.73□□□□□ -0.85
LDLR-210ENST00000559340 NSFP46459 744 aaKnown RBP9.73□□□□□ -0.85
LDLR-210ENST00000559340 PSEN1P49768 467 aa9.73□□□□□ -0.85
LDLR-210ENST00000559340 FMO1Q01740 532 aa9.73□□□□□ -0.85
LDLR-210ENST00000559340 ARHGAP15Q53QZ3 475 aa9.73□□□□□ -0.85
LDLR-210ENST00000559340 RARS2Q5T160 578 aaKnown RBP9.73□□□□□ -0.85
LDLR-210ENST00000559340 DENND1BQ6P3S1 775 aa9.73□□□□□ -0.85
LDLR-210ENST00000559340 GPR149Q86SP6 731 aa9.73□□□□□ -0.85
LDLR-210ENST00000559340 PIGZQ86VD9 579 aa9.73□□□□□ -0.85
LDLR-210ENST00000559340 TTC30AQ86WT1 665 aa9.73□□□□□ -0.85
LDLR-210ENST00000559340 ZDHHC17Q8IUH5 632 aa9.73□□□□□ -0.85
LDLR-210ENST00000559340 CCDC170Q8IYT3 715 aa9.73□□□□□ -0.85
LDLR-210ENST00000559340 SCML4Q8N228 414 aa9.73□□□□□ -0.85
LDLR-210ENST00000559340 TC2NQ8N9U0 490 aa9.73□□□□□ -0.85
LDLR-210ENST00000559340 STKLD1Q8NE28 680 aa9.73□□□□□ -0.85
LDLR-210ENST00000559340 CCDC112Q8NEF3 446 aa9.73□□□□□ -0.85
LDLR-210ENST00000559340 OVCA2Q8WZ82 227 aa9.73□□□□□ -0.85
LDLR-210ENST00000559340 GOLGA1Q92805 767 aa9.73□□□□□ -0.85
LDLR-210ENST00000559340 HLA-CQ95604 372 aa9.73□□□□□ -0.85
LDLR-210ENST00000559340 C18orf8Q96DM3 657 aa9.73□□□□□ -0.85
LDLR-210ENST00000559340 TRIM11Q96F44 468 aa9.73□□□□□ -0.85
LDLR-210ENST00000559340 TRMT2BQ96GJ1 504 aaKnown RBP9.73□□□□□ -0.85
LDLR-210ENST00000559340 VCPIP1Q96JH7 1222 aa9.73□□□□□ -0.85
LDLR-210ENST00000559340 PPP1R13BQ96KQ4 1090 aa9.73□□□□□ -0.85
LDLR-210ENST00000559340 MYRFLQ96LU7 910 aa9.73□□□□□ -0.85
LDLR-210ENST00000559340 KCNK16Q96T55 309 aa9.73□□□□□ -0.85
LDLR-210ENST00000559340 TRIM62Q9BVG3 475 aa9.73□□□□□ -0.85
LDLR-210ENST00000559340 ADAM7Q9H2U9 754 aa9.73□□□□□ -0.85
LDLR-210ENST00000559340 CRISPLD1Q9H336 500 aa9.73□□□□□ -0.85
LDLR-210ENST00000559340 ACP6Q9NPH0 428 aa9.73□□□□□ -0.85
LDLR-210ENST00000559340 AVENQ9NQS1 362 aaPredicted RBP9.73□□□□□ -0.85
LDLR-210ENST00000559340 CNGB3Q9NQW8 809 aa9.73□□□□□ -0.85
LDLR-210ENST00000559340 TRPM5Q9NZQ8 1165 aa9.73□□□□□ -0.85
LDLR-210ENST00000559340 WDR35Q9P2L0 1181 aa9.73□□□□□ -0.85
LDLR-210ENST00000559340 CD207Q9UJ71 328 aa9.73□□□□□ -0.85
LDLR-210ENST00000559340 STRIP2Q9ULQ0 834 aa9.73□□□□□ -0.85
LDLR-210ENST00000559340 MAGED2Q9UNF1 606 aaPredicted RBP9.73□□□□□ -0.85
LDLR-210ENST00000559340 MYO10Q9HD67 2058 aa9.73□□□□□ -0.85
LDLR-210ENST00000559340 DOCK8Q8NF50 2099 aa9.72□□□□□ -0.85
LDLR-210ENST00000559340 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP9.72□□□□□ -0.85
LDLR-210ENST00000559340 LINC01565O15544 149 aa9.72□□□□□ -0.85
LDLR-210ENST00000559340 RTN2O75298 545 aa9.72□□□□□ -0.85
LDLR-210ENST00000559340 RFPL2O75678 378 aa9.72□□□□□ -0.85
LDLR-210ENST00000559340 GLP2RO95838 553 aa9.72□□□□□ -0.85
LDLR-210ENST00000559340 CHRNB2P17787 502 aa9.72□□□□□ -0.85
LDLR-210ENST00000559340 PFKLP17858 780 aa9.72□□□□□ -0.85
LDLR-210ENST00000559340 ATF6P18850 670 aa9.72□□□□□ -0.85
LDLR-210ENST00000559340 COL9A1P20849 921 aa9.72□□□□□ -0.85
LDLR-210ENST00000559340 DDX6P26196 483 aaKnown RBP eCLIP9.72□□□□□ -0.85
LDLR-210ENST00000559340 EIF4A3P38919 411 aaKnown RBP9.72□□□□□ -0.85
LDLR-210ENST00000559340 RPL34P49207 117 aaKnown RBP9.72□□□□□ -0.85
LDLR-210ENST00000559340 TKTL1P51854 596 aa9.72□□□□□ -0.85
LDLR-210ENST00000559340 KIF11P52732 1056 aa9.72□□□□□ -0.85
LDLR-210ENST00000559340 SLC5A3P53794 718 aa9.72□□□□□ -0.85
LDLR-210ENST00000559340 NOMO3P69849 1222 aa9.72□□□□□ -0.85
LDLR-210ENST00000559340 CCDC173Q0VFZ6 552 aa9.72□□□□□ -0.85
LDLR-210ENST00000559340 CCDC142Q17RM4 750 aa9.72□□□□□ -0.85
LDLR-210ENST00000559340 CLEC16AQ2KHT3 1053 aa9.72□□□□□ -0.85
LDLR-210ENST00000559340 AAK1Q2M2I8 961 aa9.72□□□□□ -0.85
LDLR-210ENST00000559340 RAB41Q5JT25 222 aa9.72□□□□□ -0.85
LDLR-210ENST00000559340 C10orf76Q5T2E6 689 aa9.72□□□□□ -0.85
LDLR-210ENST00000559340 HGSNATQ68CP4 663 aa9.72□□□□□ -0.85
LDLR-210ENST00000559340 ACAD10Q6JQN1 1059 aa9.72□□□□□ -0.85
LDLR-210ENST00000559340 SYCE2Q6PIF2 218 aa9.72□□□□□ -0.85
LDLR-210ENST00000559340 TMC5Q6UXY8 1006 aa9.72□□□□□ -0.85
LDLR-210ENST00000559340 PDZD4Q76G19 769 aaPredicted RBP9.72□□□□□ -0.85
LDLR-210ENST00000559340 ZNF571Q7Z3V5 609 aaPredicted RBP9.72□□□□□ -0.85
LDLR-210ENST00000559340 TADA2BQ86TJ2 420 aa9.72□□□□□ -0.85
LDLR-210ENST00000559340 TMEM110Q86TL2 294 aa9.72□□□□□ -0.85
LDLR-210ENST00000559340 MON1AQ86VX9 555 aa9.72□□□□□ -0.85
LDLR-210ENST00000559340 PASD1Q8IV76 773 aa9.72□□□□□ -0.85
LDLR-210ENST00000559340 TXLNBQ8N3L3 684 aa9.72□□□□□ -0.85
LDLR-210ENST00000559340 TTC9BQ8N6N2 239 aa9.72□□□□□ -0.85
LDLR-210ENST00000559340 C1orf131Q8NDD1 294 aaKnown RBP9.72□□□□□ -0.85
LDLR-210ENST00000559340 ZMIZ2Q8NF64 920 aa9.72□□□□□ -0.85
LDLR-210ENST00000559340 ADAMTS19Q8TE59 1207 aa9.72□□□□□ -0.85
LDLR-210ENST00000559340 SLC20A1Q8WUM9 679 aa9.72□□□□□ -0.85
LDLR-210ENST00000559340 IRGQQ8WZA9 623 aa9.72□□□□□ -0.85
LDLR-210ENST00000559340 MRPS31Q92665 395 aaKnown RBP9.72□□□□□ -0.85
LDLR-210ENST00000559340 FBXO32Q969P5 355 aa9.72□□□□□ -0.85
LDLR-210ENST00000559340 CDK5RAP1Q96SZ6 601 aaKnown RBP9.72□□□□□ -0.85
LDLR-210ENST00000559340 UHRF1Q96T88 793 aaPredicted RBP9.72□□□□□ -0.85
LDLR-210ENST00000559340 ZSWIM1Q9BR11 485 aa9.72□□□□□ -0.85
LDLR-210ENST00000559340 CORO1BQ9BR76 489 aa9.72□□□□□ -0.85
LDLR-210ENST00000559340 TTLL2Q9BWV7 592 aa9.72□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms