RNA–Protein interactions for RNA: ENST00000558117.1

RTF1-204, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

TSL 4

Gene RTF1, Length 552 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-204ENST00000558117 ATP5JP18859 108 aa7.12□□□□□ -1.27
RTF1-204ENST00000558117 PDCP20941 246 aa7.12□□□□□ -1.27
RTF1-204ENST00000558117 CDC42EP1Q00587 391 aa7.12□□□□□ -1.27
RTF1-204ENST00000558117 DSC2Q02487 901 aa7.12□□□□□ -1.27
RTF1-204ENST00000558117 NHLH2Q02577 135 aa7.12□□□□□ -1.27
RTF1-204ENST00000558117 TEFQ10587 303 aa7.12□□□□□ -1.27
RTF1-204ENST00000558117 PIN1Q13526 163 aaPredicted RBP7.12□□□□□ -1.27
RTF1-204ENST00000558117 MAP3K21Q5TCX8 1036 aa7.12□□□□□ -1.27
RTF1-204ENST00000558117 GDF7Q7Z4P5 450 aa7.12□□□□□ -1.27
RTF1-204ENST00000558117 CATIPQ7Z7H3 387 aa7.12□□□□□ -1.27
RTF1-204ENST00000558117 DCBLD1Q8N8Z6 715 aa7.12□□□□□ -1.27
RTF1-204ENST00000558117 CLIP3Q96DZ5 547 aa7.12□□□□□ -1.27
RTF1-204ENST00000558117 TMX3Q96JJ7 454 aa7.12□□□□□ -1.27
RTF1-204ENST00000558117 POLR3GLQ9BT43 218 aa7.12□□□□□ -1.27
RTF1-204ENST00000558117 SCAND2PQ9GZW5 306 aaPredicted RBP7.12□□□□□ -1.27
RTF1-204ENST00000558117 COG5Q9UP83 839 aa7.12□□□□□ -1.27
RTF1-204ENST00000558117 ANKRD6Q9Y2G4 727 aa7.12□□□□□ -1.27
RTF1-204ENST00000558117 ZFYVE26Q68DK2 2539 aa7.12□□□□□ -1.27
RTF1-204ENST00000558117 COL4A1P02462 1669 aa7.12□□□□□ -1.27
RTF1-204ENST00000558117 DMXL1Q9Y485 3027 aa7.11□□□□□ -1.27
RTF1-204ENST00000558117 NUP98P52948 1817 aa7.11□□□□□ -1.27
RTF1-204ENST00000558117 ANKRD36CQ5JPF3 1778 aa7.11□□□□□ -1.27
RTF1-204ENST00000558117 MAST2Q6P0Q8 1798 aa7.11□□□□□ -1.27
RTF1-204ENST00000558117 MYO3BQ8WXR4 1341 aa7.11□□□□□ -1.27
RTF1-204ENST00000558117 UFL1O94874 794 aa7.11□□□□□ -1.27
RTF1-204ENST00000558117 POU2F2P09086 479 aa7.11□□□□□ -1.27
RTF1-204ENST00000558117 ACVRL1P37023 503 aa7.11□□□□□ -1.27
RTF1-204ENST00000558117 EPHB1P54762 984 aa7.11□□□□□ -1.27
RTF1-204ENST00000558117 RNASE9P60153 205 aaKnown RBP7.11□□□□□ -1.27
RTF1-204ENST00000558117 ATP2B3Q16720 1220 aa7.11□□□□□ -1.27
RTF1-204ENST00000558117 METRNLQ641Q3 311 aa7.11□□□□□ -1.27
RTF1-204ENST00000558117 RSPH3Q86UC2 560 aa7.11□□□□□ -1.27
RTF1-204ENST00000558117 ERO1BQ86YB8 467 aa7.11□□□□□ -1.27
RTF1-204ENST00000558117 ZFPM1Q8IX07 1006 aa7.11□□□□□ -1.27
RTF1-204ENST00000558117 NGEFQ8N5V2 710 aa7.11□□□□□ -1.27
RTF1-204ENST00000558117 JPH3Q8WXH2 748 aaPredicted RBP7.11□□□□□ -1.27
RTF1-204ENST00000558117 HAS1Q92839 578 aa7.11□□□□□ -1.27
RTF1-204ENST00000558117 CLPTM1LQ96KA5 538 aa7.11□□□□□ -1.27
RTF1-204ENST00000558117 PHACTR3Q96KR7 559 aa7.11□□□□□ -1.27
RTF1-204ENST00000558117 SLC46A2Q9BY10 475 aa7.11□□□□□ -1.27
RTF1-204ENST00000558117 REXO4Q9GZR2 422 aaKnown RBP7.11□□□□□ -1.27
RTF1-204ENST00000558117 ZNF180Q9UJW8 692 aa7.11□□□□□ -1.27
RTF1-204ENST00000558117 PCDHAC2Q9Y5I4 1007 aa7.11□□□□□ -1.27
RTF1-204ENST00000558117 AOX1Q06278 1338 aa7.1□□□□□ -1.27
RTF1-204ENST00000558117 TRIM43BA6NCK2 446 aa7.1□□□□□ -1.27
RTF1-204ENST00000558117 DRGXA6NNA5 263 aa7.1□□□□□ -1.27
RTF1-204ENST00000558117 S100BP04271 92 aaPredicted RBP7.1□□□□□ -1.27
RTF1-204ENST00000558117 PPIL2Q13356 520 aa7.1□□□□□ -1.27
RTF1-204ENST00000558117 STRIP1Q5VSL9 837 aa7.1□□□□□ -1.27
RTF1-204ENST00000558117 FNDC7Q5VTL7 733 aa7.1□□□□□ -1.27
RTF1-204ENST00000558117 IGFL4Q6B9Z1 124 aa7.1□□□□□ -1.27
RTF1-204ENST00000558117 ZNF529Q6P280 563 aa7.1□□□□□ -1.27
RTF1-204ENST00000558117 SEM1Q6ZVN7 128 aa7.1□□□□□ -1.27
RTF1-204ENST00000558117 ASCL5Q7RTU5 278 aa7.1□□□□□ -1.27
RTF1-204ENST00000558117 UBE3BQ7Z3V4 1068 aa7.1□□□□□ -1.27
RTF1-204ENST00000558117 PLXDC1Q8IUK5 500 aa7.1□□□□□ -1.27
RTF1-204ENST00000558117 PRR18Q8N4B5 295 aa7.1□□□□□ -1.27
RTF1-204ENST00000558117 IFI44Q8TCB0 444 aa7.1□□□□□ -1.27
RTF1-204ENST00000558117 NEU4Q8WWR8 484 aaPredicted RBP7.1□□□□□ -1.27
RTF1-204ENST00000558117 TRIM43Q96BQ3 446 aaPredicted RBP7.1□□□□□ -1.27
RTF1-204ENST00000558117 MRGPRX4Q96LA9 322 aa7.1□□□□□ -1.27
RTF1-204ENST00000558117 GTPBP4Q9BZE4 634 aaKnown RBP7.1□□□□□ -1.27
RTF1-204ENST00000558117 ALG13Q9NP73 1137 aaKnown RBP7.1□□□□□ -1.27
RTF1-204ENST00000558117 FBXO34Q9NWN3 711 aa7.1□□□□□ -1.27
RTF1-204ENST00000558117 ZIM2Q9NZV7 527 aa7.1□□□□□ -1.27
RTF1-204ENST00000558117 NIPSNAP3AQ9UFN0 247 aaPredicted RBP7.1□□□□□ -1.27
RTF1-204ENST00000558117 G3BP2Q9UN86 482 aaKnown RBP7.1□□□□□ -1.27
RTF1-204ENST00000558117 PRRC2BQ5JSZ5 2229 aaKnown RBP7.1□□□□□ -1.27
RTF1-204ENST00000558117 MGAMO43451 1857 aa7.09□□□□□ -1.27
RTF1-204ENST00000558117 TCRBV7S2A1N4TA0A589 114 aa7.09□□□□□ -1.27
RTF1-204ENST00000558117 CLRN2A0PK11 232 aa7.09□□□□□ -1.27
RTF1-204ENST00000558117 PROB1E7EW31 1015 aa7.09□□□□□ -1.27
RTF1-204ENST00000558117 RNASET2O00584 256 aaKnown RBP7.09□□□□□ -1.27
RTF1-204ENST00000558117 DCXO43602 365 aa7.09□□□□□ -1.27
RTF1-204ENST00000558117 SGTAO43765 313 aa7.09□□□□□ -1.27
RTF1-204ENST00000558117 POMCP01189 267 aa7.09□□□□□ -1.27
RTF1-204ENST00000558117 CHN2P52757 468 aa7.09□□□□□ -1.27
RTF1-204ENST00000558117 CTXN1P60606 82 aa7.09□□□□□ -1.27
RTF1-204ENST00000558117 MXRA7P84157 204 aa7.09□□□□□ -1.27
RTF1-204ENST00000558117 CREMQ03060 361 aa7.09□□□□□ -1.27
RTF1-204ENST00000558117 FHL2Q14192 279 aa7.09□□□□□ -1.27
RTF1-204ENST00000558117 UBXN2BQ14CS0 331 aa7.09□□□□□ -1.27
RTF1-204ENST00000558117 LRRC41Q15345 812 aa7.09□□□□□ -1.27
RTF1-204ENST00000558117 DLGAP5Q15398 846 aa7.09□□□□□ -1.27
RTF1-204ENST00000558117 ST3GAL2Q16842 350 aa7.09□□□□□ -1.27
RTF1-204ENST00000558117 TIGD2Q4W5G0 525 aa7.09□□□□□ -1.27
RTF1-204ENST00000558117 KIF6Q6ZMV9 814 aa7.09□□□□□ -1.27
RTF1-204ENST00000558117 USP45Q70EL2 814 aa7.09□□□□□ -1.27
RTF1-204ENST00000558117 NSUN6Q8TEA1 469 aaKnown RBP7.09□□□□□ -1.27
RTF1-204ENST00000558117 PARK7Q99497 189 aaKnown RBP7.09□□□□□ -1.27
RTF1-204ENST00000558117 NEU1Q99519 415 aa7.09□□□□□ -1.27
RTF1-204ENST00000558117 TEX101Q9BY14 249 aa7.09□□□□□ -1.27
RTF1-204ENST00000558117 CDH19Q9H159 772 aa7.09□□□□□ -1.27
RTF1-204ENST00000558117 ZNF768Q9H5H4 540 aaKnown RBP7.09□□□□□ -1.27
RTF1-204ENST00000558117 CFAP20Q9Y6A4 193 aaKnown RBP7.09□□□□□ -1.27
RTF1-204ENST00000558117 SPTBN2O15020 2390 aa7.09□□□□□ -1.28
RTF1-204ENST00000558117 BRWD1Q9NSI6 2320 aa7.09□□□□□ -1.28
RTF1-204ENST00000558117 SIPA1L3O60292 1781 aaPredicted RBP7.08□□□□□ -1.28
RTF1-204ENST00000558117 E2F8A0AVK6 867 aa7.08□□□□□ -1.28
RTF1-204ENST00000558117 LRRC14BA6NHZ5 514 aa7.08□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms