RNA–Protein interactions for RNA: ENST00000555213.1

SHMT2-218, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 611 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-218ENST00000555213 F8VP50 259 aa11.53□□□□□ -0.56
SHMT2-218ENST00000555213 CLDN5O00501 218 aa11.53□□□□□ -0.56
SHMT2-218ENST00000555213 ZNF197O14709 1029 aa11.53□□□□□ -0.56
SHMT2-218ENST00000555213 CYP26A1O43174 497 aa11.53□□□□□ -0.56
SHMT2-218ENST00000555213 MBTPS2O43462 519 aa11.53□□□□□ -0.56
SHMT2-218ENST00000555213 FAM228BP0C875 321 aa11.53□□□□□ -0.56
SHMT2-218ENST00000555213 FERP16591 822 aa11.53□□□□□ -0.56
SHMT2-218ENST00000555213 NPR3P17342 541 aa11.53□□□□□ -0.56
SHMT2-218ENST00000555213 PTPN2P17706 415 aa11.53□□□□□ -0.56
SHMT2-218ENST00000555213 ATF6P18850 670 aa11.53□□□□□ -0.56
SHMT2-218ENST00000555213 MSNP26038 577 aaKnown RBP11.53□□□□□ -0.56
SHMT2-218ENST00000555213 GNA15P30679 374 aa11.53□□□□□ -0.56
SHMT2-218ENST00000555213 PDE6CP51160 858 aa11.53□□□□□ -0.56
SHMT2-218ENST00000555213 BCAT1P54687 386 aa11.53□□□□□ -0.56
SHMT2-218ENST00000555213 ARID5AQ03989 594 aa11.53□□□□□ -0.56
SHMT2-218ENST00000555213 SMAD2Q15796 467 aaKnown RBP11.53□□□□□ -0.56
SHMT2-218ENST00000555213 DDR2Q16832 855 aa11.53□□□□□ -0.56
SHMT2-218ENST00000555213 TSR1Q2NL82 804 aaKnown RBP11.53□□□□□ -0.56
SHMT2-218ENST00000555213 GOLGA7BQ2TAP0 167 aa11.53□□□□□ -0.56
SHMT2-218ENST00000555213 NYAP1Q6ZVC0 841 aa11.53□□□□□ -0.56
SHMT2-218ENST00000555213 DDX1Q92499 740 aaKnown RBP11.53□□□□□ -0.56
SHMT2-218ENST00000555213 SUSD6Q92537 303 aa11.53□□□□□ -0.56
SHMT2-218ENST00000555213 PPP1R13BQ96KQ4 1090 aa11.53□□□□□ -0.56
SHMT2-218ENST00000555213 SPATA17Q96L03 361 aa11.53□□□□□ -0.56
SHMT2-218ENST00000555213 LPIN3Q9BQK8 851 aa11.53□□□□□ -0.56
SHMT2-218ENST00000555213 WDR6Q9NNW5 1121 aaKnown RBP11.53□□□□□ -0.56
SHMT2-218ENST00000555213 UXTQ9UBK9 157 aaPredicted RBP11.53□□□□□ -0.56
SHMT2-218ENST00000555213 TFR2Q9UP52 801 aa11.53□□□□□ -0.56
SHMT2-218ENST00000555213 SPTBN5Q9NRC6 3674 aaKnown RBP11.53□□□□□ -0.56
SHMT2-218ENST00000555213 GRXCR2A6NFK2 248 aa11.52□□□□□ -0.57
SHMT2-218ENST00000555213 M0QYV0 167 aa11.52□□□□□ -0.57
SHMT2-218ENST00000555213 O00370 1275 aa11.52□□□□□ -0.57
SHMT2-218ENST00000555213 DDX3XO00571 662 aaKnown RBP eCLIP11.52□□□□□ -0.57
SHMT2-218ENST00000555213 THAP12O43422 761 aa11.52□□□□□ -0.57
SHMT2-218ENST00000555213 RTN3O95197 1032 aaPredicted RBP11.52□□□□□ -0.57
SHMT2-218ENST00000555213 CALCAP01258 141 aa11.52□□□□□ -0.57
SHMT2-218ENST00000555213 RHOP08100 348 aa11.52□□□□□ -0.57
SHMT2-218ENST00000555213 CCDC172P0C7W6 258 aa11.52□□□□□ -0.57
SHMT2-218ENST00000555213 SETSIPP0DME0 302 aa11.52□□□□□ -0.57
SHMT2-218ENST00000555213 FSHRP23945 695 aa11.52□□□□□ -0.57
SHMT2-218ENST00000555213 CDC25CP30307 473 aa11.52□□□□□ -0.57
SHMT2-218ENST00000555213 KIF11P52732 1056 aa11.52□□□□□ -0.57
SHMT2-218ENST00000555213 GFPT1Q06210 699 aaPredicted RBP11.52□□□□□ -0.57
SHMT2-218ENST00000555213 KLHL30Q0D2K2 578 aa11.52□□□□□ -0.57
SHMT2-218ENST00000555213 PPP1R26Q5T8A7 1209 aaPredicted RBP11.52□□□□□ -0.57
SHMT2-218ENST00000555213 ZNF662Q6ZS27 426 aa11.52□□□□□ -0.57
SHMT2-218ENST00000555213 DENND5BQ6ZUT9 1274 aa11.52□□□□□ -0.57
SHMT2-218ENST00000555213 OTOP3Q7RTS5 596 aa11.52□□□□□ -0.57
SHMT2-218ENST00000555213 GRASPQ7Z6J2 395 aaPredicted RBP11.52□□□□□ -0.57
SHMT2-218ENST00000555213 DNAJB7Q7Z6W7 309 aaPredicted RBP11.52□□□□□ -0.57
SHMT2-218ENST00000555213 ANKRD52Q8NB46 1076 aa11.52□□□□□ -0.57
SHMT2-218ENST00000555213 GADD45GIP1Q8TAE8 222 aaPredicted RBP11.52□□□□□ -0.57
SHMT2-218ENST00000555213 GIPC2Q8TF65 315 aa11.52□□□□□ -0.57
SHMT2-218ENST00000555213 CCDC42Q96M95 316 aa11.52□□□□□ -0.57
SHMT2-218ENST00000555213 ASB2Q96Q27 587 aa11.52□□□□□ -0.57
SHMT2-218ENST00000555213 PCDHB18PQ96TA0 734 aa11.52□□□□□ -0.57
SHMT2-218ENST00000555213 DUSP16Q9BY84 665 aa11.52□□□□□ -0.57
SHMT2-218ENST00000555213 LACRTQ9GZZ8 138 aa11.52□□□□□ -0.57
SHMT2-218ENST00000555213 PNPLA8Q9NP80 782 aa11.52□□□□□ -0.57
SHMT2-218ENST00000555213 ADAMTS1Q9UHI8 967 aa11.52□□□□□ -0.57
SHMT2-218ENST00000555213 NOCTQ9UK39 431 aaKnown RBP11.52□□□□□ -0.57
SHMT2-218ENST00000555213 TSPAN16Q9UKR8 245 aa11.52□□□□□ -0.57
SHMT2-218ENST00000555213 MAGED2Q9UNF1 606 aaPredicted RBP11.52□□□□□ -0.57
SHMT2-218ENST00000555213 WDR3Q9UNX4 943 aaKnown RBP eCLIP11.52□□□□□ -0.57
SHMT2-218ENST00000555213 MRPS23Q9Y3D9 190 aaKnown RBP11.52□□□□□ -0.57
SHMT2-218ENST00000555213 NR2E1Q9Y466 385 aa11.52□□□□□ -0.57
SHMT2-218ENST00000555213 CEP83Q9Y592 693 aa11.52□□□□□ -0.57
SHMT2-218ENST00000555213 BZW2Q9Y6E2 419 aaKnown RBP11.52□□□□□ -0.57
SHMT2-218ENST00000555213 SLC38A8A6NNN8 435 aa11.51□□□□□ -0.57
SHMT2-218ENST00000555213 FANCGO15287 622 aa11.51□□□□□ -0.57
SHMT2-218ENST00000555213 MYL4P12829 197 aa11.51□□□□□ -0.57
SHMT2-218ENST00000555213 BRD2P25440 801 aaKnown RBP11.51□□□□□ -0.57
SHMT2-218ENST00000555213 GPR15P49685 360 aa11.51□□□□□ -0.57
SHMT2-218ENST00000555213 KCNQ1P51787 676 aa11.51□□□□□ -0.57
SHMT2-218ENST00000555213 MAP3K7CLP57077 242 aa11.51□□□□□ -0.57
SHMT2-218ENST00000555213 BST2Q10589 180 aaKnown RBP11.51□□□□□ -0.57
SHMT2-218ENST00000555213 CNGA2Q16280 664 aa11.51□□□□□ -0.57
SHMT2-218ENST00000555213 ARHGAP15Q53QZ3 475 aa11.51□□□□□ -0.57
SHMT2-218ENST00000555213 SDHAF4Q5VUM1 108 aa11.51□□□□□ -0.57
SHMT2-218ENST00000555213 LCLAT1Q6UWP7 414 aa11.51□□□□□ -0.57
SHMT2-218ENST00000555213 CLEC20AQ6ZU45 233 aa11.51□□□□□ -0.57
SHMT2-218ENST00000555213 PAQR9Q6ZVX9 377 aa11.51□□□□□ -0.57
SHMT2-218ENST00000555213 GET4Q7L5D6 327 aaPredicted RBP11.51□□□□□ -0.57
SHMT2-218ENST00000555213 NOP9Q86U38 636 aaKnown RBP11.51□□□□□ -0.57
SHMT2-218ENST00000555213 SLC47A2Q86VL8 602 aa11.51□□□□□ -0.57
SHMT2-218ENST00000555213 TDRD5Q8NAT2 981 aaKnown RBP11.51□□□□□ -0.57
SHMT2-218ENST00000555213 GPR152Q8TDT2 470 aa11.51□□□□□ -0.57
SHMT2-218ENST00000555213 SLC20A1Q8WUM9 679 aa11.51□□□□□ -0.57
SHMT2-218ENST00000555213 ACSF2Q96CM8 615 aaPredicted RBP11.51□□□□□ -0.57
SHMT2-218ENST00000555213 TRMT2BQ96GJ1 504 aaKnown RBP11.51□□□□□ -0.57
SHMT2-218ENST00000555213 SLITRK1Q96PX8 696 aa11.51□□□□□ -0.57
SHMT2-218ENST00000555213 AGPAT1Q99943 283 aa11.51□□□□□ -0.57
SHMT2-218ENST00000555213 ZSWIM1Q9BR11 485 aa11.51□□□□□ -0.57
SHMT2-218ENST00000555213 PHF7Q9BWX1 381 aaPredicted RBP11.51□□□□□ -0.57
SHMT2-218ENST00000555213 PDCL3Q9H2J4 239 aa11.51□□□□□ -0.57
SHMT2-218ENST00000555213 FBXO44Q9H4M3 255 aa11.51□□□□□ -0.57
SHMT2-218ENST00000555213 POMKQ9H5K3 350 aa11.51□□□□□ -0.57
SHMT2-218ENST00000555213 CSNK1G1Q9HCP0 422 aa11.51□□□□□ -0.57
SHMT2-218ENST00000555213 AVENQ9NQS1 362 aaPredicted RBP11.51□□□□□ -0.57
SHMT2-218ENST00000555213 HCFC1R1Q9NWW0 138 aa11.51□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms