RNA–Protein interactions for RNA: ENST00000553837.5

SHMT2-207, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 2,152 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-207ENST00000553837 NINJ2Q9NZG7 142 aa12.81□□□□□ -0.36
SHMT2-207ENST00000553837 ZNF212Q9UDV6 495 aa12.81□□□□□ -0.36
SHMT2-207ENST00000553837 SBDSQ9Y3A5 250 aaKnown RBP eCLIP12.81□□□□□ -0.36
SHMT2-207ENST00000553837 A0A0G2JLL6 359 aaPredicted RBP12.81□□□□□ -0.36
SHMT2-207ENST00000553837 F8VP50 259 aa12.81□□□□□ -0.36
SHMT2-207ENST00000553837 CAPN9O14815 690 aa12.81□□□□□ -0.36
SHMT2-207ENST00000553837 LGR5O75473 907 aa12.81□□□□□ -0.36
SHMT2-207ENST00000553837 IQCF3P0C7M6 154 aa12.81□□□□□ -0.36
SHMT2-207ENST00000553837 TGFB3P10600 412 aa12.81□□□□□ -0.36
SHMT2-207ENST00000553837 OSTNP61366 133 aa12.81□□□□□ -0.36
SHMT2-207ENST00000553837 MCL1Q07820 350 aa12.81□□□□□ -0.36
SHMT2-207ENST00000553837 PDK4Q16654 411 aa12.81□□□□□ -0.36
SHMT2-207ENST00000553837 IER5Q5VY09 327 aa12.81□□□□□ -0.36
SHMT2-207ENST00000553837 SCARA5Q6ZMJ2 495 aa12.81□□□□□ -0.36
SHMT2-207ENST00000553837 PRRT2Q7Z6L0 340 aaPredicted RBP12.81□□□□□ -0.36
SHMT2-207ENST00000553837 CCNJLQ8IV13 435 aa12.81□□□□□ -0.36
SHMT2-207ENST00000553837 FBXO16Q8IX29 292 aaPredicted RBP12.81□□□□□ -0.36
SHMT2-207ENST00000553837 STMN2Q93045 179 aa12.81□□□□□ -0.36
SHMT2-207ENST00000553837 BTBD10Q9BSF8 475 aa12.81□□□□□ -0.36
SHMT2-207ENST00000553837 CADM1Q9BY67 442 aaKnown RBP12.81□□□□□ -0.36
SHMT2-207ENST00000553837 XYLT2Q9H1B5 865 aa12.81□□□□□ -0.36
SHMT2-207ENST00000553837 MINDY3Q9H8M7 445 aa12.81□□□□□ -0.36
SHMT2-207ENST00000553837 MRPL47Q9HD33 250 aaKnown RBP12.81□□□□□ -0.36
SHMT2-207ENST00000553837 STX18Q9P2W9 335 aaKnown RBP12.81□□□□□ -0.36
SHMT2-207ENST00000553837 TJP2Q9UDY2 1190 aa12.81□□□□□ -0.36
SHMT2-207ENST00000553837 ANAPC5Q9UJX4 755 aa12.81□□□□□ -0.36
SHMT2-207ENST00000553837 ZNF510Q9Y2H8 683 aa12.81□□□□□ -0.36
SHMT2-207ENST00000553837 MCM3APO60318 1980 aa12.81□□□□□ -0.36
SHMT2-207ENST00000553837 SMAPO00193 183 aa12.8□□□□□ -0.36
SHMT2-207ENST00000553837 C2CD2LO14523 706 aa12.8□□□□□ -0.36
SHMT2-207ENST00000553837 OGTO15294 1046 aa12.8□□□□□ -0.36
SHMT2-207ENST00000553837 PSMG1O95456 288 aa12.8□□□□□ -0.36
SHMT2-207ENST00000553837 CETPP11597 493 aa12.8□□□□□ -0.36
SHMT2-207ENST00000553837 PROZP22891 400 aa12.8□□□□□ -0.36
SHMT2-207ENST00000553837 ASPAP45381 313 aa12.8□□□□□ -0.36
SHMT2-207ENST00000553837 EFNA5P52803 228 aa12.8□□□□□ -0.36
SHMT2-207ENST00000553837 TFAMQ00059 246 aaKnown RBP12.8□□□□□ -0.36
SHMT2-207ENST00000553837 CCNG2Q16589 344 aa12.8□□□□□ -0.36
SHMT2-207ENST00000553837 CELF3Q5SZQ8 465 aaKnown RBP12.8□□□□□ -0.36
SHMT2-207ENST00000553837 RFWD3Q6PCD5 774 aa12.8□□□□□ -0.36
SHMT2-207ENST00000553837 MFSD7Q6UXD7 560 aa12.8□□□□□ -0.36
SHMT2-207ENST00000553837 RHPN2Q8IUC4 686 aa12.8□□□□□ -0.36
SHMT2-207ENST00000553837 THNSL1Q8IYQ7 743 aa12.8□□□□□ -0.36
SHMT2-207ENST00000553837 EXD1Q8NHP7 514 aa12.8□□□□□ -0.36
SHMT2-207ENST00000553837 GADD45GIP1Q8TAE8 222 aaPredicted RBP12.8□□□□□ -0.36
SHMT2-207ENST00000553837 ZNF398Q8TD17 642 aa12.8□□□□□ -0.36
SHMT2-207ENST00000553837 DENND1AQ8TEH3 1009 aa12.8□□□□□ -0.36
SHMT2-207ENST00000553837 ZNF184Q99676 751 aaPredicted RBP12.8□□□□□ -0.36
SHMT2-207ENST00000553837 TRAIPQ9BWF2 469 aa12.8□□□□□ -0.36
SHMT2-207ENST00000553837 PTPRHQ9HD43 1115 aa12.8□□□□□ -0.36
SHMT2-207ENST00000553837 PARVAQ9NVD7 372 aa12.8□□□□□ -0.36
SHMT2-207ENST00000553837 DDX43Q9NXZ2 648 aaKnown RBP12.8□□□□□ -0.36
SHMT2-207ENST00000553837 RBPJLQ9UBG7 517 aa12.8□□□□□ -0.36
SHMT2-207ENST00000553837 POLIQ9UNA4 740 aa12.8□□□□□ -0.36
SHMT2-207ENST00000553837 CSADQ9Y600 493 aa12.8□□□□□ -0.36
SHMT2-207ENST00000553837 IVNS1ABPQ9Y6Y0 642 aa12.8□□□□□ -0.36
SHMT2-207ENST00000553837 PRPF4O43172 522 aaKnown RBP eCLIP12.8□□□□□ -0.361e-8■■■□□ 17.5
SHMT2-207ENST00000553837 MAN1A1P33908 653 aa12.8□□□□□ -0.36
SHMT2-207ENST00000553837 ADCY8P40145 1251 aa12.8□□□□□ -0.36
SHMT2-207ENST00000553837 NFX1Q12986 1120 aaKnown RBP12.8□□□□□ -0.36
SHMT2-207ENST00000553837 CNPY1Q3B7I2 92 aa12.8□□□□□ -0.36
SHMT2-207ENST00000553837 CYP4A22Q5TCH4 519 aa12.8□□□□□ -0.36
SHMT2-207ENST00000553837 FYB2Q5VWT5 728 aa12.8□□□□□ -0.36
SHMT2-207ENST00000553837 GPAT2Q6NUI2 795 aa12.8□□□□□ -0.36
SHMT2-207ENST00000553837 DSTYKQ6XUX3 929 aa12.8□□□□□ -0.36
SHMT2-207ENST00000553837 NLRP9Q7RTR0 991 aa12.8□□□□□ -0.36
SHMT2-207ENST00000553837 RNF168Q8IYW5 571 aaPredicted RBP12.8□□□□□ -0.36
SHMT2-207ENST00000553837 MAML1Q92585 1016 aa12.8□□□□□ -0.36
SHMT2-207ENST00000553837 MCEEQ96PE7 176 aa12.8□□□□□ -0.36
SHMT2-207ENST00000553837 SPATA16Q9BXB7 569 aa12.8□□□□□ -0.36
SHMT2-207ENST00000553837 FHDC1Q9C0D6 1143 aaPredicted RBP12.8□□□□□ -0.36
SHMT2-207ENST00000553837 NIF3L1Q9GZT8 377 aa12.8□□□□□ -0.36
SHMT2-207ENST00000553837 SLCO1B3Q9NPD5 702 aa12.8□□□□□ -0.36
SHMT2-207ENST00000553837 PDGFCQ9NRA1 345 aa12.8□□□□□ -0.36
SHMT2-207ENST00000553837 CYTH4Q9UIA0 394 aa12.8□□□□□ -0.36
SHMT2-207ENST00000553837 SMG5Q9UPR3 1016 aaKnown RBP12.8□□□□□ -0.36
SHMT2-207ENST00000553837 WDR37Q9Y2I8 494 aa12.8□□□□□ -0.36
SHMT2-207ENST00000553837 SCINQ9Y6U3 715 aa12.8□□□□□ -0.36
SHMT2-207ENST00000553837 ANK1P16157 1881 aa12.8□□□□□ -0.36
SHMT2-207ENST00000553837 GSC2O15499 205 aa12.79□□□□□ -0.36
SHMT2-207ENST00000553837 CSDE1O75534 798 aaKnown RBP12.79□□□□□ -0.36
SHMT2-207ENST00000553837 KRT36O76013 467 aa12.79□□□□□ -0.36
SHMT2-207ENST00000553837 ATF2P15336 505 aa12.79□□□□□ -0.36
SHMT2-207ENST00000553837 KLRC2P26717 231 aa12.79□□□□□ -0.36
SHMT2-207ENST00000553837 RAP1GAPP47736 663 aa12.79□□□□□ -0.36
SHMT2-207ENST00000553837 SCNN1BP51168 640 aa12.79□□□□□ -0.36
SHMT2-207ENST00000553837 GRM1Q13255 1194 aa12.79□□□□□ -0.36
SHMT2-207ENST00000553837 MAPK6Q16659 721 aa12.79□□□□□ -0.36
SHMT2-207ENST00000553837 DUOXA2Q1HG44 320 aa12.79□□□□□ -0.36
SHMT2-207ENST00000553837 KAZNQ674X7 775 aa12.79□□□□□ -0.36
SHMT2-207ENST00000553837 CLNKQ7Z7G1 428 aa12.79□□□□□ -0.36
SHMT2-207ENST00000553837 MTDHQ86UE4 582 aaKnown RBP12.79□□□□□ -0.36
SHMT2-207ENST00000553837 GRK7Q8WTQ7 553 aa12.79□□□□□ -0.36
SHMT2-207ENST00000553837 PPP1R14BQ96C90 147 aa12.79□□□□□ -0.36
SHMT2-207ENST00000553837 NLRP4Q96MN2 994 aa12.79□□□□□ -0.36
SHMT2-207ENST00000553837 AGAP3Q96P47 875 aa12.79□□□□□ -0.36
SHMT2-207ENST00000553837 SLITRK1Q96PX8 696 aa12.79□□□□□ -0.36
SHMT2-207ENST00000553837 MIPEPQ99797 713 aa12.79□□□□□ -0.36
SHMT2-207ENST00000553837 CENPKQ9BS16 269 aa12.79□□□□□ -0.36
SHMT2-207ENST00000553837 YIPF2Q9BWQ6 316 aa12.79□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms