RNA–Protein interactions for RNA: ENST00000553617.5

TDP1-207, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 5

Gene TDP1, Length 876 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-207ENST00000553617 CCNT2O60583 730 aaKnown RBP4.43□□□□□ -1.7
TDP1-207ENST00000553617 SRGAP2O75044 1071 aa4.43□□□□□ -1.7
TDP1-207ENST00000553617 CBFA2T3O75081 653 aa4.43□□□□□ -1.7
TDP1-207ENST00000553617 RASAL1O95294 804 aa4.43□□□□□ -1.7
TDP1-207ENST00000553617 TSPAN15O95858 294 aa4.43□□□□□ -1.7
TDP1-207ENST00000553617 CSF1RP07333 972 aa4.43□□□□□ -1.7
TDP1-207ENST00000553617 SPATA31D3P0C874 917 aa4.43□□□□□ -1.7
TDP1-207ENST00000553617 ATP1A3P13637 1013 aa4.43□□□□□ -1.7
TDP1-207ENST00000553617 KCNA2P16389 499 aa4.43□□□□□ -1.7
TDP1-207ENST00000553617 XBP1P17861 261 aa4.43□□□□□ -1.7
TDP1-207ENST00000553617 CDK7P50613 346 aa4.43□□□□□ -1.7
TDP1-207ENST00000553617 RABGGTBP53611 331 aa4.43□□□□□ -1.7
TDP1-207ENST00000553617 MC2RQ01718 297 aa4.43□□□□□ -1.7
TDP1-207ENST00000553617 SATB1Q01826 763 aa4.43□□□□□ -1.7
TDP1-207ENST00000553617 UBE3AQ05086 875 aa4.43□□□□□ -1.7
TDP1-207ENST00000553617 CHRNDQ07001 517 aa4.43□□□□□ -1.7
TDP1-207ENST00000553617 FOXL1Q12952 345 aa4.43□□□□□ -1.7
TDP1-207ENST00000553617 TRPC3Q13507 836 aa4.43□□□□□ -1.7
TDP1-207ENST00000553617 GRM4Q14833 912 aa4.43□□□□□ -1.7
TDP1-207ENST00000553617 BTBD16Q32M84 506 aa4.43□□□□□ -1.7
TDP1-207ENST00000553617 PTCHD3Q3KNS1 767 aa4.43□□□□□ -1.7
TDP1-207ENST00000553617 ATPAF1Q5TC12 328 aaPredicted RBP4.43□□□□□ -1.7
TDP1-207ENST00000553617 NFRKBQ6P4R8 1299 aa4.43□□□□□ -1.7
TDP1-207ENST00000553617 LAYNQ6UX15 382 aa4.43□□□□□ -1.7
TDP1-207ENST00000553617 ARHGEF18Q6ZSZ5 1173 aa4.43□□□□□ -1.7
TDP1-207ENST00000553617 SPATA31D4Q6ZUB0 917 aa4.43□□□□□ -1.7
TDP1-207ENST00000553617 TAX1BP1Q86VP1 789 aa4.43□□□□□ -1.7
TDP1-207ENST00000553617 LGI4Q8N135 537 aa4.43□□□□□ -1.7
TDP1-207ENST00000553617 FAM109AQ8N4B1 249 aa4.43□□□□□ -1.7
TDP1-207ENST00000553617 MBD3L2Q8NHZ7 208 aaPredicted RBP4.43□□□□□ -1.7
TDP1-207ENST00000553617 DNAJB14Q8TBM8 379 aa4.43□□□□□ -1.7
TDP1-207ENST00000553617 GRAMD1AQ96CP6 724 aa4.43□□□□□ -1.7
TDP1-207ENST00000553617 PHACTR3Q96KR7 559 aa4.43□□□□□ -1.7
TDP1-207ENST00000553617 COG8Q96MW5 612 aa4.43□□□□□ -1.7
TDP1-207ENST00000553617 TRAPPC9Q96Q05 1148 aa4.43□□□□□ -1.7
TDP1-207ENST00000553617 GPR20Q99678 358 aa4.43□□□□□ -1.7
TDP1-207ENST00000553617 NUDT22Q9BRQ3 303 aa4.43□□□□□ -1.7
TDP1-207ENST00000553617 AGXT2Q9BYV1 514 aa4.43□□□□□ -1.7
TDP1-207ENST00000553617 VPS16Q9H269 839 aa4.43□□□□□ -1.7
TDP1-207ENST00000553617 TAF1DQ9H5J8 278 aaPredicted RBP4.43□□□□□ -1.7
TDP1-207ENST00000553617 JMJD4Q9H9V9 463 aa4.43□□□□□ -1.7
TDP1-207ENST00000553617 SMC4Q9NTJ3 1288 aa4.43□□□□□ -1.7
TDP1-207ENST00000553617 PLA2G3Q9NZ20 509 aa4.43□□□□□ -1.7
TDP1-207ENST00000553617 DNAJB11Q9UBS4 358 aa4.43□□□□□ -1.7
TDP1-207ENST00000553617 NDRG4Q9ULP0 352 aaKnown RBP4.43□□□□□ -1.7
TDP1-207ENST00000553617 C19orf53Q9UNZ5 99 aaPredicted RBP4.43□□□□□ -1.7
TDP1-207ENST00000553617 MRPS17Q9Y2R5 130 aaKnown RBP4.43□□□□□ -1.7
TDP1-207ENST00000553617 NEU2Q9Y3R4 380 aa4.43□□□□□ -1.7
TDP1-207ENST00000553617 SPATA31A3Q5VYP0 1347 aa4.43□□□□□ -1.7
TDP1-207ENST00000553617 COL15A1P39059 1388 aa4.42□□□□□ -1.7
TDP1-207ENST00000553617 AGPSO00116 658 aa4.42□□□□□ -1.7
TDP1-207ENST00000553617 LEFTY2O00292 366 aa4.42□□□□□ -1.7
TDP1-207ENST00000553617 TAF5LO75529 589 aa4.42□□□□□ -1.7
TDP1-207ENST00000553617 TBX18O95935 607 aa4.42□□□□□ -1.7
TDP1-207ENST00000553617 CNPP09543 421 aaKnown RBP4.42□□□□□ -1.7
TDP1-207ENST00000553617 IFIT1P09914 478 aaKnown RBP4.42□□□□□ -1.7
TDP1-207ENST00000553617 SRGAP2BP0DMP2 458 aa4.42□□□□□ -1.7
TDP1-207ENST00000553617 HK1P19367 917 aa4.42□□□□□ -1.7
TDP1-207ENST00000553617 HTR7P34969 479 aa4.42□□□□□ -1.7
TDP1-207ENST00000553617 KRT9P35527 623 aa4.42□□□□□ -1.7
TDP1-207ENST00000553617 AARSP49588 968 aaKnown RBP eCLIP4.42□□□□□ -1.7
TDP1-207ENST00000553617 ANXA11P50995 505 aaKnown RBP4.42□□□□□ -1.7
TDP1-207ENST00000553617 TIAL1Q01085 375 aaKnown RBP eCLIP4.42□□□□□ -1.7
TDP1-207ENST00000553617 SMAD1Q15797 465 aaKnown RBP4.42□□□□□ -1.7
TDP1-207ENST00000553617 KCNA10Q16322 511 aa4.42□□□□□ -1.7
TDP1-207ENST00000553617 GPATCH4Q5T3I0 446 aaKnown RBP4.42□□□□□ -1.7
TDP1-207ENST00000553617 ZNF648Q5T619 568 aaPredicted RBP4.42□□□□□ -1.7
TDP1-207ENST00000553617 SLFN13Q68D06 897 aa4.42□□□□□ -1.7
TDP1-207ENST00000553617 CFAP161Q6P656 301 aa4.42□□□□□ -1.7
TDP1-207ENST00000553617 TMEM108Q6UXF1 575 aa4.42□□□□□ -1.7
TDP1-207ENST00000553617 LRRC55Q6ZSA7 311 aa4.42□□□□□ -1.7
TDP1-207ENST00000553617 TMEM151BQ8IW70 566 aa4.42□□□□□ -1.7
TDP1-207ENST00000553617 TSPYL6Q8N831 410 aa4.42□□□□□ -1.7
TDP1-207ENST00000553617 MB21D1Q8N884 522 aa4.42□□□□□ -1.7
TDP1-207ENST00000553617 BHLHE22Q8NFJ8 381 aaPredicted RBP4.42□□□□□ -1.7
TDP1-207ENST00000553617 CSGALNACT1Q8TDX6 532 aa4.42□□□□□ -1.7
TDP1-207ENST00000553617 HDAC2Q92769 488 aaKnown RBP4.42□□□□□ -1.7
TDP1-207ENST00000553617 PPP2R3CQ969Q6 453 aa4.42□□□□□ -1.7
TDP1-207ENST00000553617 ZBTB10Q96DT7 871 aa4.42□□□□□ -1.7
TDP1-207ENST00000553617 OR14A2Q96R54 314 aa4.42□□□□□ -1.7
TDP1-207ENST00000553617 REXO4Q9GZR2 422 aaKnown RBP4.42□□□□□ -1.7
TDP1-207ENST00000553617 RNPEPQ9H4A4 650 aa4.42□□□□□ -1.7
TDP1-207ENST00000553617 BLOC1S4Q9NUP1 217 aa4.42□□□□□ -1.7
TDP1-207ENST00000553617 PI4KBQ9UBF8 816 aa4.42□□□□□ -1.7
TDP1-207ENST00000553617 CNTN6Q9UQ52 1028 aa4.42□□□□□ -1.7
TDP1-207ENST00000553617 AATKQ6ZMQ8 1374 aa4.41□□□□□ -1.7
TDP1-207ENST00000553617 PNMA6EA0A0J9YXQ4 647 aa4.41□□□□□ -1.7
TDP1-207ENST00000553617 A0A1B0GTW7 788 aa4.41□□□□□ -1.7
TDP1-207ENST00000553617 A0A1W2PS29 197 aa4.41□□□□□ -1.7
TDP1-207ENST00000553617 FAM90A20PA6NIJ5 464 aa4.41□□□□□ -1.7
TDP1-207ENST00000553617 RPP40O75818 363 aaKnown RBP4.41□□□□□ -1.7
TDP1-207ENST00000553617 RAD17O75943 681 aa4.41□□□□□ -1.7
TDP1-207ENST00000553617 ZFPL1O95159 310 aa4.41□□□□□ -1.7
TDP1-207ENST00000553617 DDX58O95786 925 aaKnown RBP4.41□□□□□ -1.7
TDP1-207ENST00000553617 HSP90AA1P07900 732 aaKnown RBP4.41□□□□□ -1.7
TDP1-207ENST00000553617 HGFP14210 728 aa4.41□□□□□ -1.7
TDP1-207ENST00000553617 ITGALP20701 1170 aa4.41□□□□□ -1.7
TDP1-207ENST00000553617 FGFR4P22455 802 aa4.41□□□□□ -1.7
TDP1-207ENST00000553617 AKT1P31749 480 aa4.41□□□□□ -1.7
TDP1-207ENST00000553617 MSX2P35548 267 aaPredicted RBP4.41□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms