RNA–Protein interactions for RNA: ENST00000553340.1

SYNE3-202, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 1 (best) BASIC

Gene SYNE3, Length 2,615 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-202ENST00000553340 ARFGAP1Q8N6T3 406 aa18.32■□□□□ 0.52
SYNE3-202ENST00000553340 CEP120Q8N960 986 aa18.32■□□□□ 0.52
SYNE3-202ENST00000553340 SMC1BQ8NDV3 1235 aa18.32■□□□□ 0.52
SYNE3-202ENST00000553340 TRAPPC9Q96Q05 1148 aa18.32■□□□□ 0.52
SYNE3-202ENST00000553340 SRPK1Q96SB4 655 aaKnown RBP18.32■□□□□ 0.52
SYNE3-202ENST00000553340 PORCNQ9H237 461 aa18.32■□□□□ 0.52
SYNE3-202ENST00000553340 PIDD1Q9HB75 910 aa18.32■□□□□ 0.52
SYNE3-202ENST00000553340 ARHGEF4Q9NR80 690 aa18.32■□□□□ 0.52
SYNE3-202ENST00000553340 ADGRA2Q96PE1 1338 aa18.31■□□□□ 0.52
SYNE3-202ENST00000553340 H3BRJ5 948 aa18.31■□□□□ 0.52
SYNE3-202ENST00000553340 RBP3P10745 1247 aa18.31■□□□□ 0.52
SYNE3-202ENST00000553340 CPA2P48052 419 aa18.31■□□□□ 0.52
SYNE3-202ENST00000553340 CACNA2D1P54289 1103 aa18.31■□□□□ 0.52
SYNE3-202ENST00000553340 DGKZQ13574 1117 aa18.31■□□□□ 0.52
SYNE3-202ENST00000553340 ABHD15Q6UXT9 468 aa18.31■□□□□ 0.52
SYNE3-202ENST00000553340 KCTD6Q8NC69 237 aa18.31■□□□□ 0.52
SYNE3-202ENST00000553340 GATA6Q92908 595 aa18.31■□□□□ 0.52
SYNE3-202ENST00000553340 NIF3L1Q9GZT8 377 aa18.31■□□□□ 0.52
SYNE3-202ENST00000553340 TEX264Q9Y6I9 313 aa18.31■□□□□ 0.52
SYNE3-202ENST00000553340 CD48P09326 243 aa18.31■□□□□ 0.52
SYNE3-202ENST00000553340 AMPD1P23109 780 aa18.31■□□□□ 0.52
SYNE3-202ENST00000553340 MYL6P60660 151 aa18.31■□□□□ 0.52
SYNE3-202ENST00000553340 TGFB2P61812 414 aa18.31■□□□□ 0.52
SYNE3-202ENST00000553340 C6orf163Q5TEZ5 329 aa18.31■□□□□ 0.52
SYNE3-202ENST00000553340 TTC39BQ5VTQ0 682 aaPredicted RBP18.31■□□□□ 0.52
SYNE3-202ENST00000553340 SLC26A11Q86WA9 606 aa18.31■□□□□ 0.52
SYNE3-202ENST00000553340 JOSD2Q8TAC2 188 aa18.31■□□□□ 0.52
SYNE3-202ENST00000553340 FNIP1Q8TF40 1166 aa18.31■□□□□ 0.52
SYNE3-202ENST00000553340 TFAP2BQ92481 460 aa18.31■□□□□ 0.52
SYNE3-202ENST00000553340 KRT82Q9NSB4 513 aa18.31■□□□□ 0.52
SYNE3-202ENST00000553340 CPSF2Q9P2I0 782 aaKnown RBP18.31■□□□□ 0.52
SYNE3-202ENST00000553340 WDR35Q9P2L0 1181 aa18.31■□□□□ 0.52
SYNE3-202ENST00000553340 WASF2Q9Y6W5 498 aa18.31■□□□□ 0.52
SYNE3-202ENST00000553340 SEC23IPQ9Y6Y8 1000 aaKnown RBP18.31■□□□□ 0.52
SYNE3-202ENST00000553340 GSTA3Q16772 222 aa18.3■□□□□ 0.52
SYNE3-202ENST00000553340 WDR49Q8IV35 697 aa18.3■□□□□ 0.52
SYNE3-202ENST00000553340 SPATA18Q8TC71 538 aa18.3■□□□□ 0.52
SYNE3-202ENST00000553340 ZFAND2BQ8WV99 257 aa18.3■□□□□ 0.52
SYNE3-202ENST00000553340 C7orf26Q96N11 449 aa18.3■□□□□ 0.52
SYNE3-202ENST00000553340 RNF146Q9NTX7 359 aa18.3■□□□□ 0.52
SYNE3-202ENST00000553340 CAPN14A8MX76 684 aa18.3■□□□□ 0.52
SYNE3-202ENST00000553340 TRIM49D1C9J1S8 452 aa18.3■□□□□ 0.52
SYNE3-202ENST00000553340 E5RJQ4 531 aa18.3■□□□□ 0.52
SYNE3-202ENST00000553340 RAD17O75943 681 aa18.3■□□□□ 0.52
SYNE3-202ENST00000553340 ENO1P06733 434 aaKnown RBP18.3■□□□□ 0.52
SYNE3-202ENST00000553340 STIP1P31948 543 aaKnown RBP18.3■□□□□ 0.52
SYNE3-202ENST00000553340 ATG16L1Q676U5 607 aa18.3■□□□□ 0.52
SYNE3-202ENST00000553340 NET1Q7Z628 596 aaPredicted RBP18.3■□□□□ 0.52
SYNE3-202ENST00000553340 BRSK2Q8IWQ3 736 aa18.3■□□□□ 0.52
SYNE3-202ENST00000553340 PPARGC1AQ9UBK2 798 aaKnown RBP18.3■□□□□ 0.52
SYNE3-202ENST00000553340 KIAA1217Q5T5P2 1943 aa18.29■□□□□ 0.52
SYNE3-202ENST00000553340 CIB2O75838 187 aa18.29■□□□□ 0.52
SYNE3-202ENST00000553340 KRT37O76014 449 aa18.29■□□□□ 0.52
SYNE3-202ENST00000553340 RGS20O76081 388 aa18.29■□□□□ 0.52
SYNE3-202ENST00000553340 WEE2P0C1S8 567 aa18.29■□□□□ 0.52
SYNE3-202ENST00000553340 CHRNA5P30532 468 aa18.29■□□□□ 0.52
SYNE3-202ENST00000553340 MAP3K10Q02779 954 aa18.29■□□□□ 0.52
SYNE3-202ENST00000553340 PTPN20Q4JDL3 420 aa18.29■□□□□ 0.52
SYNE3-202ENST00000553340 RFX8Q6ZV50 586 aa18.29■□□□□ 0.52
SYNE3-202ENST00000553340 SCUBE1Q8IWY4 988 aa18.29■□□□□ 0.52
SYNE3-202ENST00000553340 CTAGE3PQ8IX95 158 aa18.29■□□□□ 0.52
SYNE3-202ENST00000553340 KIAA0319LQ8IZA0 1049 aa18.29■□□□□ 0.52
SYNE3-202ENST00000553340 CDHR1Q96JP9 859 aa18.29■□□□□ 0.52
SYNE3-202ENST00000553340 MTMR12Q9C0I1 747 aa18.29■□□□□ 0.52
SYNE3-202ENST00000553340 WWP1Q9H0M0 922 aa18.29■□□□□ 0.52
SYNE3-202ENST00000553340 PDP2Q9P2J9 529 aa18.29■□□□□ 0.52
SYNE3-202ENST00000553340 PCSK1NQ9UHG2 260 aa18.29■□□□□ 0.52
SYNE3-202ENST00000553340 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP18.29■□□□□ 0.52
SYNE3-202ENST00000553340 GCLCP48506 637 aaPredicted RBP18.29■□□□□ 0.52
SYNE3-202ENST00000553340 PSMC1P62191 440 aaKnown RBP18.29■□□□□ 0.52
SYNE3-202ENST00000553340 YWHAEP62258 255 aaKnown RBP18.29■□□□□ 0.52
SYNE3-202ENST00000553340 TMPRSS15P98073 1019 aa18.29■□□□□ 0.52
SYNE3-202ENST00000553340 TRMT5Q32P41 509 aaKnown RBP18.29■□□□□ 0.52
SYNE3-202ENST00000553340 CDHR3Q6ZTQ4 885 aa18.29■□□□□ 0.52
SYNE3-202ENST00000553340 NSUN6Q8TEA1 469 aaKnown RBP18.29■□□□□ 0.52
SYNE3-202ENST00000553340 GMLQ99445 158 aa18.29■□□□□ 0.52
SYNE3-202ENST00000553340 PNPLA8Q9NP80 782 aa18.29■□□□□ 0.52
SYNE3-202ENST00000553340 SNRPAP09012 282 aaKnown RBP18.28■□□□□ 0.52
SYNE3-202ENST00000553340 SUPT20HL2P0C7V6 817 aa18.28■□□□□ 0.52
SYNE3-202ENST00000553340 ARL2P36404 184 aa18.28■□□□□ 0.52
SYNE3-202ENST00000553340 NRLP54845 237 aa18.28■□□□□ 0.52
SYNE3-202ENST00000553340 ROR1Q01973 937 aa18.28■□□□□ 0.52
SYNE3-202ENST00000553340 BST1Q10588 318 aa18.28■□□□□ 0.52
SYNE3-202ENST00000553340 SUPT20HL1Q3ZLR7 823 aa18.28■□□□□ 0.52
SYNE3-202ENST00000553340 LGSNQ5TDP6 509 aa18.28■□□□□ 0.52
SYNE3-202ENST00000553340 DENND1BQ6P3S1 775 aa18.28■□□□□ 0.52
SYNE3-202ENST00000553340 DARS2Q6PI48 645 aaKnown RBP18.28■□□□□ 0.52
SYNE3-202ENST00000553340 TREML1Q86YW5 311 aa18.28■□□□□ 0.52
SYNE3-202ENST00000553340 ARID3BQ8IVW6 561 aaPredicted RBP18.28■□□□□ 0.52
SYNE3-202ENST00000553340 KBTBD2Q8IY47 623 aa18.28■□□□□ 0.52
SYNE3-202ENST00000553340 PPM1NQ8N819 430 aa18.28■□□□□ 0.52
SYNE3-202ENST00000553340 RBM15BQ8NDT2 890 aaKnown RBP18.28■□□□□ 0.52
SYNE3-202ENST00000553340 PHC3Q8NDX5 983 aa18.28■□□□□ 0.52
SYNE3-202ENST00000553340 CMASQ8NFW8 434 aaPredicted RBP18.28■□□□□ 0.52
SYNE3-202ENST00000553340 SLC7A3Q8WY07 619 aa18.28■□□□□ 0.52
SYNE3-202ENST00000553340 E2F7Q96AV8 911 aa18.28■□□□□ 0.52
SYNE3-202ENST00000553340 FGD4Q96M96 766 aa18.28■□□□□ 0.52
SYNE3-202ENST00000553340 NR1H4Q96RI1 486 aaPredicted RBP18.28■□□□□ 0.52
SYNE3-202ENST00000553340 CALN1Q9BXU9 219 aa18.28■□□□□ 0.52
SYNE3-202ENST00000553340 DHX33Q9H6R0 707 aaKnown RBP18.28■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms