RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 MOGAT1Q96PD6 335 aa4.89□□□□□ -1.63
VPS29-205ENST00000548539 HEYLQ9NQ87 328 aaPredicted RBP4.89□□□□□ -1.63
VPS29-205ENST00000548539 RNF7Q9UBF6 113 aa4.89□□□□□ -1.63
VPS29-205ENST00000548539 GRHPRQ9UBQ7 328 aa4.89□□□□□ -1.63
VPS29-205ENST00000548539 SHOC2Q9UQ13 582 aa4.89□□□□□ -1.63
VPS29-205ENST00000548539 COL11A2P13942 1736 aaPredicted RBP4.89□□□□□ -1.63
VPS29-205ENST00000548539 IKBKBO14920 756 aa4.88□□□□□ -1.63
VPS29-205ENST00000548539 PIP5K1BO14986 540 aa4.88□□□□□ -1.63
VPS29-205ENST00000548539 RASAL1O95294 804 aa4.88□□□□□ -1.63
VPS29-205ENST00000548539 CYP2C9P11712 490 aa4.88□□□□□ -1.63
VPS29-205ENST00000548539 ITGALP20701 1170 aa4.88□□□□□ -1.63
VPS29-205ENST00000548539 GABRB3P28472 473 aa4.88□□□□□ -1.63
VPS29-205ENST00000548539 GRK6P43250 576 aa4.88□□□□□ -1.63
VPS29-205ENST00000548539 KRTAP10-7P60409 375 aaPredicted RBP4.88□□□□□ -1.63
VPS29-205ENST00000548539 RAPGEF1Q13905 1077 aa4.88□□□□□ -1.63
VPS29-205ENST00000548539 RAB30Q15771 203 aa4.88□□□□□ -1.63
VPS29-205ENST00000548539 MGAT5BQ3V5L5 792 aa4.88□□□□□ -1.63
VPS29-205ENST00000548539 ZACNQ401N2 412 aa4.88□□□□□ -1.63
VPS29-205ENST00000548539 ARHGAP15Q53QZ3 475 aa4.88□□□□□ -1.63
VPS29-205ENST00000548539 FCRL6Q6DN72 434 aa4.88□□□□□ -1.63
VPS29-205ENST00000548539 GAS2L3Q86XJ1 694 aa4.88□□□□□ -1.63
VPS29-205ENST00000548539 CPXCR1Q8N123 301 aa4.88□□□□□ -1.63
VPS29-205ENST00000548539 FAM98AQ8NCA5 519 aaKnown RBP4.88□□□□□ -1.63
VPS29-205ENST00000548539 BPIFB1Q8TDL5 484 aa4.88□□□□□ -1.63
VPS29-205ENST00000548539 SCARB1Q8WTV0 552 aa4.88□□□□□ -1.63
VPS29-205ENST00000548539 STYXQ8WUJ0 223 aa4.88□□□□□ -1.63
VPS29-205ENST00000548539 PPM1EQ8WY54 764 aa4.88□□□□□ -1.63
VPS29-205ENST00000548539 RNF31Q96EP0 1072 aa4.88□□□□□ -1.63
VPS29-205ENST00000548539 DCLRE1CQ96SD1 692 aaKnown RBP4.88□□□□□ -1.63
VPS29-205ENST00000548539 RMDN3Q96TC7 470 aa4.88□□□□□ -1.63
VPS29-205ENST00000548539 GDF15Q99988 308 aa4.88□□□□□ -1.63
VPS29-205ENST00000548539 LDHAL6BQ9BYZ2 381 aaPredicted RBP4.88□□□□□ -1.63
VPS29-205ENST00000548539 AKIP1Q9NQ31 210 aa4.88□□□□□ -1.63
VPS29-205ENST00000548539 RGL1Q9NZL6 768 aa4.88□□□□□ -1.63
VPS29-205ENST00000548539 RNF181Q9P0P0 153 aa4.88□□□□□ -1.63
VPS29-205ENST00000548539 IGSF9Q9P2J2 1179 aa4.88□□□□□ -1.63
VPS29-205ENST00000548539 CHST2Q9Y4C5 530 aa4.88□□□□□ -1.63
VPS29-205ENST00000548539 GOLGA6L3A6NEY3 463 aa4.87□□□□□ -1.63
VPS29-205ENST00000548539 DIRC3C9JPN6 131 aa4.87□□□□□ -1.63
VPS29-205ENST00000548539 TRIM38O00635 465 aa4.87□□□□□ -1.63
VPS29-205ENST00000548539 HNRNPDLO14979 420 aaKnown RBP4.87□□□□□ -1.63
VPS29-205ENST00000548539 NPC1O15118 1278 aa4.87□□□□□ -1.63
VPS29-205ENST00000548539 NPHP1O15259 732 aa4.87□□□□□ -1.63
VPS29-205ENST00000548539 RGS10O43665 173 aa4.87□□□□□ -1.63
VPS29-205ENST00000548539 RRP9O43818 475 aaKnown RBP4.87□□□□□ -1.63
VPS29-205ENST00000548539 PIAS2O75928 621 aa4.87□□□□□ -1.63
VPS29-205ENST00000548539 NCR1O76036 304 aa4.87□□□□□ -1.63
VPS29-205ENST00000548539 NDUFA10O95299 355 aa4.87□□□□□ -1.63
VPS29-205ENST00000548539 TNFRSF6BO95407 300 aa4.87□□□□□ -1.63
VPS29-205ENST00000548539 PAX3P23760 479 aa4.87□□□□□ -1.63
VPS29-205ENST00000548539 NDUFV1P49821 464 aa4.87□□□□□ -1.63
VPS29-205ENST00000548539 PRKAG1P54619 331 aa4.87□□□□□ -1.63
VPS29-205ENST00000548539 LOXL3P58215 753 aa4.87□□□□□ -1.63
VPS29-205ENST00000548539 SATB1Q01826 763 aa4.87□□□□□ -1.63
VPS29-205ENST00000548539 FPGSQ05932 587 aa4.87□□□□□ -1.63
VPS29-205ENST00000548539 FOXI1Q12951 378 aa4.87□□□□□ -1.63
VPS29-205ENST00000548539 GEN1Q17RS7 908 aa4.87□□□□□ -1.63
VPS29-205ENST00000548539 INSCQ1MX18 579 aa4.87□□□□□ -1.63
VPS29-205ENST00000548539 PTCHD3Q3KNS1 767 aa4.87□□□□□ -1.63
VPS29-205ENST00000548539 HSP90AB4PQ58FF6 505 aa4.87□□□□□ -1.63
VPS29-205ENST00000548539 ARHGAP40Q5TG30 622 aa4.87□□□□□ -1.63
VPS29-205ENST00000548539 B3GNTL1Q67FW5 361 aaPredicted RBP4.87□□□□□ -1.63
VPS29-205ENST00000548539 TLDC1Q6P9B6 456 aa4.87□□□□□ -1.63
VPS29-205ENST00000548539 LDHAL6AQ6ZMR3 332 aa4.87□□□□□ -1.63
VPS29-205ENST00000548539 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP4.87□□□□□ -1.63
VPS29-205ENST00000548539 Q8NA96 180 aa4.87□□□□□ -1.63
VPS29-205ENST00000548539 SPATA5Q8NB90 893 aa4.87□□□□□ -1.63
VPS29-205ENST00000548539 SMCR8Q8TEV9 937 aaPredicted RBP4.87□□□□□ -1.63
VPS29-205ENST00000548539 LTV1Q96GA3 475 aaPredicted RBP4.87□□□□□ -1.63
VPS29-205ENST00000548539 SNX27Q96L92 541 aa4.87□□□□□ -1.63
VPS29-205ENST00000548539 MED15Q96RN5 788 aa4.87□□□□□ -1.63
VPS29-205ENST00000548539 EIF2AQ9BY44 585 aaKnown RBP4.87□□□□□ -1.63
VPS29-205ENST00000548539 PCDHAC1Q9H158 963 aa4.87□□□□□ -1.63
VPS29-205ENST00000548539 MYLK2Q9H1R3 596 aa4.87□□□□□ -1.63
VPS29-205ENST00000548539 DACT1Q9NYF0 836 aa4.87□□□□□ -1.63
VPS29-205ENST00000548539 DNMT3BQ9UBC3 853 aaKnown RBP4.87□□□□□ -1.63
VPS29-205ENST00000548539 CDY1Q9Y6F8 540 aa4.87□□□□□ -1.63
VPS29-205ENST00000548539 GAGE12BA1L429 117 aa4.86□□□□□ -1.63
VPS29-205ENST00000548539 GAGE12HA6NDE8 117 aa4.86□□□□□ -1.63
VPS29-205ENST00000548539 F5H697 171 aa4.86□□□□□ -1.63
VPS29-205ENST00000548539 CCP110O43303 1012 aa4.86□□□□□ -1.63
VPS29-205ENST00000548539 SRGAP2O75044 1071 aa4.86□□□□□ -1.63
VPS29-205ENST00000548539 INMTO95050 263 aa4.86□□□□□ -1.63
VPS29-205ENST00000548539 PECAM1P16284 738 aaPredicted RBP4.86□□□□□ -1.63
VPS29-205ENST00000548539 YY1P25490 414 aa4.86□□□□□ -1.63
VPS29-205ENST00000548539 ATICP31939 592 aa4.86□□□□□ -1.63
VPS29-205ENST00000548539 PLA2G5P39877 138 aa4.86□□□□□ -1.63
VPS29-205ENST00000548539 NPTX2P47972 431 aa4.86□□□□□ -1.63
VPS29-205ENST00000548539 ANXA11P50995 505 aaKnown RBP4.86□□□□□ -1.63
VPS29-205ENST00000548539 RENBPP51606 427 aa4.86□□□□□ -1.63
VPS29-205ENST00000548539 COPAP53621 1224 aa4.86□□□□□ -1.63
VPS29-205ENST00000548539 CXADRP78310 365 aa4.86□□□□□ -1.63
VPS29-205ENST00000548539 MYO1EQ12965 1108 aa4.86□□□□□ -1.63
VPS29-205ENST00000548539 BIRC3Q13489 604 aa4.86□□□□□ -1.63
VPS29-205ENST00000548539 SPARCL1Q14515 664 aa4.86□□□□□ -1.63
VPS29-205ENST00000548539 NPY5RQ15761 445 aa4.86□□□□□ -1.63
VPS29-205ENST00000548539 TMEM95Q3KNT9 176 aa4.86□□□□□ -1.63
VPS29-205ENST00000548539 RBM20Q5T481 1227 aaKnown RBP4.86□□□□□ -1.63
VPS29-205ENST00000548539 RAP1GAP2Q684P5 730 aa4.86□□□□□ -1.63
VPS29-205ENST00000548539 RGS7BPQ6MZT1 257 aaPredicted RBP4.86□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms