RNA–Protein interactions for RNA: ENST00000547486.1

CPSF6-204, Transcript of cleavage and polyadenylation specific factor 6, humanhuman

TSL 2

Gene CPSF6, Length 872 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF6-204ENST00000547486 PUM1Q14671 1186 aaKnown RBP eCLIP14.19□□□□□ -0.14
CPSF6-204ENST00000547486 SGSM1Q2NKQ1 1148 aa14.19□□□□□ -0.14
CPSF6-204ENST00000547486 GAB4Q2WGN9 574 aa14.19□□□□□ -0.14
CPSF6-204ENST00000547486 CEP135Q66GS9 1140 aa14.19□□□□□ -0.14
CPSF6-204ENST00000547486 LAIR1Q6GTX8 287 aa14.19□□□□□ -0.14
CPSF6-204ENST00000547486 SPOPLQ6IQ16 392 aa14.19□□□□□ -0.14
CPSF6-204ENST00000547486 SV2AQ7L0J3 742 aa14.19□□□□□ -0.14
CPSF6-204ENST00000547486 DGLUCYQ7Z3D6 616 aa14.19□□□□□ -0.14
CPSF6-204ENST00000547486 ACOT1Q86TX2 421 aa14.19□□□□□ -0.14
CPSF6-204ENST00000547486 WDR5BQ86VZ2 330 aa14.19□□□□□ -0.14
CPSF6-204ENST00000547486 ADGRG2Q8IZP9 1017 aa14.19□□□□□ -0.14
CPSF6-204ENST00000547486 FUKQ8N0W3 1084 aa14.19□□□□□ -0.14
CPSF6-204ENST00000547486 NUP93Q8N1F7 819 aa14.19□□□□□ -0.14
CPSF6-204ENST00000547486 GPR161Q8N6U8 529 aaKnown RBP14.19□□□□□ -0.14
CPSF6-204ENST00000547486 SCAMP5Q8TAC9 235 aa14.19□□□□□ -0.14
CPSF6-204ENST00000547486 TMC2Q8TDI7 906 aa14.19□□□□□ -0.14
CPSF6-204ENST00000547486 UTP3Q9NQZ2 479 aaKnown RBP eCLIP14.19□□□□□ -0.143e-6■■□□□ 12.8
CPSF6-204ENST00000547486 SMPD4Q9NXE4 827 aa14.19□□□□□ -0.14
CPSF6-204ENST00000547486 EHD2Q9NZN4 543 aa14.19□□□□□ -0.14
CPSF6-204ENST00000547486 CHORDC1Q9UHD1 332 aaPredicted RBP14.19□□□□□ -0.14
CPSF6-204ENST00000547486 GMEB2Q9UKD1 530 aa14.19□□□□□ -0.14
CPSF6-204ENST00000547486 RAB23Q9ULC3 237 aa14.19□□□□□ -0.14
CPSF6-204ENST00000547486 TRAF3IP3Q9Y228 551 aa14.19□□□□□ -0.14
CPSF6-204ENST00000547486 GTF3C3Q9Y5Q9 886 aa14.19□□□□□ -0.14
CPSF6-204ENST00000547486 CPQQ9Y646 472 aa14.19□□□□□ -0.14
CPSF6-204ENST00000547486 MED19A0JLT2 244 aaPredicted RBP14.18□□□□□ -0.14
CPSF6-204ENST00000547486 ATG13O75143 517 aa14.18□□□□□ -0.14
CPSF6-204ENST00000547486 AKAP3O75969 853 aa14.18□□□□□ -0.14
CPSF6-204ENST00000547486 BEST1O76090 585 aa14.18□□□□□ -0.14
CPSF6-204ENST00000547486 RHOBTB3O94955 611 aa14.18□□□□□ -0.14
CPSF6-204ENST00000547486 RETP07949 1114 aa14.18□□□□□ -0.14
CPSF6-204ENST00000547486 YWHAQP27348 245 aa14.18□□□□□ -0.14
CPSF6-204ENST00000547486 PGFP49763 221 aa14.18□□□□□ -0.14
CPSF6-204ENST00000547486 FAM35AQ86V20 835 aa14.18□□□□□ -0.14
CPSF6-204ENST00000547486 CD101Q93033 1021 aa14.18□□□□□ -0.14
CPSF6-204ENST00000547486 IL37Q9NZH6 218 aa14.18□□□□□ -0.14
CPSF6-204ENST00000547486 HMGXB4Q9UGU5 601 aa14.18□□□□□ -0.14
CPSF6-204ENST00000547486 USP18Q9UMW8 372 aa14.18□□□□□ -0.14
CPSF6-204ENST00000547486 SLC8A2Q9UPR5 921 aa14.18□□□□□ -0.14
CPSF6-204ENST00000547486 A0A1W2PQ27 194 aa14.17□□□□□ -0.14
CPSF6-204ENST00000547486 A0A1W2PQ64 194 aa14.17□□□□□ -0.14
CPSF6-204ENST00000547486 A0A1W2PQD8 194 aa14.17□□□□□ -0.14
CPSF6-204ENST00000547486 IKBKBO14920 756 aa14.17□□□□□ -0.14
CPSF6-204ENST00000547486 CLSTN1O94985 981 aa14.17□□□□□ -0.14
CPSF6-204ENST00000547486 ASS1P00966 412 aaKnown RBP14.17□□□□□ -0.14
CPSF6-204ENST00000547486 OPRD1P41143 372 aa14.17□□□□□ -0.14
CPSF6-204ENST00000547486 ASPAP45381 313 aa14.17□□□□□ -0.14
CPSF6-204ENST00000547486 PDE6CP51160 858 aa14.17□□□□□ -0.14
CPSF6-204ENST00000547486 NDST1P52848 882 aa14.17□□□□□ -0.14
CPSF6-204ENST00000547486 ATXN1P54253 815 aaKnown RBP14.17□□□□□ -0.14
CPSF6-204ENST00000547486 NR1H3Q13133 447 aa14.17□□□□□ -0.14
CPSF6-204ENST00000547486 KRBA2Q6ZNG9 492 aa14.17□□□□□ -0.14
CPSF6-204ENST00000547486 FILIP1Q7Z7B0 1213 aa14.17□□□□□ -0.14
CPSF6-204ENST00000547486 CRYBG2Q8N1P7 616 aa14.17□□□□□ -0.14
CPSF6-204ENST00000547486 FAM160A2Q8N612 972 aaPredicted RBP14.17□□□□□ -0.14
CPSF6-204ENST00000547486 C12orf29Q8N999 325 aa14.17□□□□□ -0.14
CPSF6-204ENST00000547486 ZMIZ2Q8NF64 920 aa14.17□□□□□ -0.14
CPSF6-204ENST00000547486 RPLP0P6Q8NHW5 317 aa14.17□□□□□ -0.14
CPSF6-204ENST00000547486 TNIP3Q96KP6 325 aa14.17□□□□□ -0.14
CPSF6-204ENST00000547486 SLITRK1Q96PX8 696 aa14.17□□□□□ -0.14
CPSF6-204ENST00000547486 SMOQ99835 787 aa14.17□□□□□ -0.14
CPSF6-204ENST00000547486 MED10Q9BTT4 135 aa14.17□□□□□ -0.14
CPSF6-204ENST00000547486 GDPD2Q9HCC8 539 aa14.17□□□□□ -0.14
CPSF6-204ENST00000547486 FRMD4BQ9Y2L6 1034 aa14.17□□□□□ -0.14
CPSF6-204ENST00000547486 DYNC1LI1Q9Y6G9 523 aaKnown RBP14.17□□□□□ -0.14
CPSF6-204ENST00000547486 GREB1Q4ZG55 1949 aa14.16□□□□□ -0.14
CPSF6-204ENST00000547486 K7EQS6 105 aa14.16□□□□□ -0.14
CPSF6-204ENST00000547486 COCHO43405 550 aa14.16□□□□□ -0.14
CPSF6-204ENST00000547486 CALUO43852 315 aaPredicted RBP14.16□□□□□ -0.14
CPSF6-204ENST00000547486 AP1G2O75843 785 aa14.16□□□□□ -0.14
CPSF6-204ENST00000547486 ZNF202O95125 648 aa14.16□□□□□ -0.14
CPSF6-204ENST00000547486 NFATC1O95644 943 aa14.16□□□□□ -0.14
CPSF6-204ENST00000547486 HLA-DRAP01903 254 aa14.16□□□□□ -0.14
CPSF6-204ENST00000547486 TRIM49P0CI25 452 aa14.16□□□□□ -0.14
CPSF6-204ENST00000547486 TRIM49CP0CI26 452 aa14.16□□□□□ -0.14
CPSF6-204ENST00000547486 CCDC130P13994 396 aa14.16□□□□□ -0.14
CPSF6-204ENST00000547486 NR2F2P24468 414 aa14.16□□□□□ -0.14
CPSF6-204ENST00000547486 SLC6A11P48066 632 aa14.16□□□□□ -0.14
CPSF6-204ENST00000547486 GCLMP48507 274 aa14.16□□□□□ -0.14
CPSF6-204ENST00000547486 VAMP7P51809 220 aa14.16□□□□□ -0.14
CPSF6-204ENST00000547486 SLC5A3P53794 718 aa14.16□□□□□ -0.14
CPSF6-204ENST00000547486 PPP3CAQ08209 521 aa14.16□□□□□ -0.14
CPSF6-204ENST00000547486 MESP2Q0VG99 397 aa14.16□□□□□ -0.14
CPSF6-204ENST00000547486 NFIL3Q16649 462 aa14.16□□□□□ -0.14
CPSF6-204ENST00000547486 FBXO43Q4G163 708 aa14.16□□□□□ -0.14
CPSF6-204ENST00000547486 RHBDF2Q6PJF5 856 aa14.16□□□□□ -0.14
CPSF6-204ENST00000547486 CEP68Q76N32 757 aa14.16□□□□□ -0.14
CPSF6-204ENST00000547486 SFTPA1Q8IWL2 248 aa14.16□□□□□ -0.14
CPSF6-204ENST00000547486 SLC2A14Q8TDB8 520 aa14.16□□□□□ -0.14
CPSF6-204ENST00000547486 GAB3Q8WWW8 586 aa14.16□□□□□ -0.14
CPSF6-204ENST00000547486 TAF4BQ92750 862 aa14.16□□□□□ -0.14
CPSF6-204ENST00000547486 ZFRQ96KR1 1074 aaKnown RBP14.16□□□□□ -0.14
CPSF6-204ENST00000547486 HHIPQ96QV1 700 aa14.16□□□□□ -0.14
CPSF6-204ENST00000547486 TWNKQ96RR1 684 aa14.16□□□□□ -0.14
CPSF6-204ENST00000547486 SCAND2PQ9GZW5 306 aaPredicted RBP14.16□□□□□ -0.14
CPSF6-204ENST00000547486 APOBEC3GQ9HC16 384 aaKnown RBP14.16□□□□□ -0.14
CPSF6-204ENST00000547486 SEMA4GQ9NTN9 838 aa14.16□□□□□ -0.14
CPSF6-204ENST00000547486 CFAP97Q9P2B7 532 aa14.16□□□□□ -0.14
CPSF6-204ENST00000547486 ANAPC1Q9H1A4 1944 aa14.15□□□□□ -0.14
CPSF6-204ENST00000547486 CCDC163A0A0D9SF12 145 aa14.15□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms