RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 UNC13DQ70J99 1090 aa9.04□□□□□ -0.96
USP28-215ENST00000545608 RETREG3Q86VR2 466 aa9.04□□□□□ -0.96
USP28-215ENST00000545608 CPA6Q8N4T0 437 aa9.04□□□□□ -0.96
USP28-215ENST00000545608 IQUBQ8NA54 791 aa9.04□□□□□ -0.96
USP28-215ENST00000545608 SH3RF2Q8TEC5 729 aa9.04□□□□□ -0.96
USP28-215ENST00000545608 SCFD1Q8WVM8 642 aa9.04□□□□□ -0.96
USP28-215ENST00000545608 CCDC127Q96BQ5 260 aa9.04□□□□□ -0.96
USP28-215ENST00000545608 PCED1BQ96HM7 432 aa9.04□□□□□ -0.96
USP28-215ENST00000545608 SPATA17Q96L03 361 aa9.04□□□□□ -0.96
USP28-215ENST00000545608 MMS19Q96T76 1030 aa9.04□□□□□ -0.96
USP28-215ENST00000545608 CGRRF1Q99675 332 aa9.04□□□□□ -0.96
USP28-215ENST00000545608 P2RY13Q9BPV8 354 aa9.04□□□□□ -0.96
USP28-215ENST00000545608 GZF1Q9H116 711 aaPredicted RBP9.04□□□□□ -0.96
USP28-215ENST00000545608 BLZF1Q9H2G9 400 aa9.04□□□□□ -0.96
USP28-215ENST00000545608 SLC8A2Q9UPR5 921 aa9.04□□□□□ -0.96
USP28-215ENST00000545608 DCHS1Q96JQ0 3298 aa9.03□□□□□ -0.96
USP28-215ENST00000545608 CCDC163A0A0D9SF12 145 aa9.03□□□□□ -0.96
USP28-215ENST00000545608 ANTXRLA6NF34 631 aa9.03□□□□□ -0.96
USP28-215ENST00000545608 SLC30A4O14863 429 aa9.03□□□□□ -0.96
USP28-215ENST00000545608 POLR2DO15514 142 aaKnown RBP9.03□□□□□ -0.96
USP28-215ENST00000545608 ACTN4O43707 911 aaKnown RBP9.03□□□□□ -0.96
USP28-215ENST00000545608 TACC1O75410 805 aa9.03□□□□□ -0.96
USP28-215ENST00000545608 RPP40O75818 363 aaKnown RBP9.03□□□□□ -0.96
USP28-215ENST00000545608 TCF3P15923 654 aa9.03□□□□□ -0.96
USP28-215ENST00000545608 DRD1P21728 446 aa9.03□□□□□ -0.96
USP28-215ENST00000545608 CACNA2D1P54289 1103 aa9.03□□□□□ -0.96
USP28-215ENST00000545608 CYP24A1Q07973 514 aa9.03□□□□□ -0.96
USP28-215ENST00000545608 KCNB1Q14721 858 aa9.03□□□□□ -0.96
USP28-215ENST00000545608 MAPRE1Q15691 268 aaKnown RBP9.03□□□□□ -0.96
USP28-215ENST00000545608 CCDC6Q16204 474 aa9.03□□□□□ -0.96
USP28-215ENST00000545608 MDH1BQ5I0G3 518 aa9.03□□□□□ -0.96
USP28-215ENST00000545608 DENND5BQ6ZUT9 1274 aa9.03□□□□□ -0.96
USP28-215ENST00000545608 KBTBD6Q86V97 674 aa9.03□□□□□ -0.96
USP28-215ENST00000545608 FSIP1Q8NA03 581 aa9.03□□□□□ -0.96
USP28-215ENST00000545608 XXYLT1Q8NBI6 393 aa9.03□□□□□ -0.96
USP28-215ENST00000545608 OR6B3Q8NGW1 331 aa9.03□□□□□ -0.96
USP28-215ENST00000545608 MYCBPAPQ8TBZ2 947 aa9.03□□□□□ -0.96
USP28-215ENST00000545608 PLEKHO2Q8TD55 490 aa9.03□□□□□ -0.96
USP28-215ENST00000545608 NETO1Q8TDF5 533 aa9.03□□□□□ -0.96
USP28-215ENST00000545608 GAB3Q8WWW8 586 aa9.03□□□□□ -0.96
USP28-215ENST00000545608 CD101Q93033 1021 aa9.03□□□□□ -0.96
USP28-215ENST00000545608 C8orf48Q96LL4 319 aa9.03□□□□□ -0.96
USP28-215ENST00000545608 HHIPQ96QV1 700 aa9.03□□□□□ -0.96
USP28-215ENST00000545608 FNBP1Q96RU3 617 aa9.03□□□□□ -0.96
USP28-215ENST00000545608 TTLL2Q9BWV7 592 aa9.03□□□□□ -0.96
USP28-215ENST00000545608 RNF38Q9H0F5 515 aa9.03□□□□□ -0.96
USP28-215ENST00000545608 ARRDC1-AS1Q9H2J1 176 aa9.03□□□□□ -0.96
USP28-215ENST00000545608 SNX25Q9H3E2 840 aa9.03□□□□□ -0.96
USP28-215ENST00000545608 DPEP3Q9H4B8 488 aa9.03□□□□□ -0.96
USP28-215ENST00000545608 SLC39A2Q9NP94 309 aa9.03□□□□□ -0.96
USP28-215ENST00000545608 TMEM30AQ9NV96 361 aa9.03□□□□□ -0.96
USP28-215ENST00000545608 TRPM5Q9NZQ8 1165 aa9.03□□□□□ -0.96
USP28-215ENST00000545608 PCDHA7Q9UN72 937 aa9.03□□□□□ -0.96
USP28-215ENST00000545608 ARHGAP26Q9UNA1 814 aa9.03□□□□□ -0.96
USP28-215ENST00000545608 SPTBN2O15020 2390 aa9.03□□□□□ -0.96
USP28-215ENST00000545608 TCHHQ07283 1943 aa9.03□□□□□ -0.96
USP28-215ENST00000545608 SDK1Q7Z5N4 2213 aa9.03□□□□□ -0.96
USP28-215ENST00000545608 ZNF840PA6NDX5 716 aa9.02□□□□□ -0.97
USP28-215ENST00000545608 F8VP50 259 aa9.02□□□□□ -0.97
USP28-215ENST00000545608 LEFTY2O00292 366 aa9.02□□□□□ -0.97
USP28-215ENST00000545608 CLDN5O00501 218 aa9.02□□□□□ -0.97
USP28-215ENST00000545608 FAM163BP0C2L3 166 aa9.02□□□□□ -0.97
USP28-215ENST00000545608 CCDC192P0DO97 292 aa9.02□□□□□ -0.97
USP28-215ENST00000545608 PTPN1P18031 435 aaKnown RBP9.02□□□□□ -0.97
USP28-215ENST00000545608 ANXA13P27216 316 aa9.02□□□□□ -0.97
USP28-215ENST00000545608 OPRD1P41143 372 aa9.02□□□□□ -0.97
USP28-215ENST00000545608 AFMP43652 599 aa9.02□□□□□ -0.97
USP28-215ENST00000545608 RAP1GAPP47736 663 aa9.02□□□□□ -0.97
USP28-215ENST00000545608 CASP4P49662 377 aa9.02□□□□□ -0.97
USP28-215ENST00000545608 MYL6P60660 151 aa9.02□□□□□ -0.97
USP28-215ENST00000545608 SNRPFP62306 86 aaKnown RBP9.02□□□□□ -0.97
USP28-215ENST00000545608 PSMD2Q13200 908 aa9.02□□□□□ -0.97
USP28-215ENST00000545608 CUL4BQ13620 913 aa9.02□□□□□ -0.97
USP28-215ENST00000545608 SF3A2Q15428 464 aaKnown RBP9.02□□□□□ -0.97
USP28-215ENST00000545608 BMT2Q1RMZ1 405 aa9.02□□□□□ -0.97
USP28-215ENST00000545608 GAB4Q2WGN9 574 aa9.02□□□□□ -0.97
USP28-215ENST00000545608 WDR72Q3MJ13 1102 aa9.02□□□□□ -0.97
USP28-215ENST00000545608 FBXO43Q4G163 708 aa9.02□□□□□ -0.97
USP28-215ENST00000545608 SYT13Q7L8C5 426 aa9.02□□□□□ -0.97
USP28-215ENST00000545608 HS2ST1Q7LGA3 356 aa9.02□□□□□ -0.97
USP28-215ENST00000545608 CACNA2D4Q7Z3S7 1137 aa9.02□□□□□ -0.97
USP28-215ENST00000545608 CAMKK1Q8N5S9 505 aa9.02□□□□□ -0.97
USP28-215ENST00000545608 RPLP0P6Q8NHW5 317 aa9.02□□□□□ -0.97
USP28-215ENST00000545608 ATP2A3Q93084 1043 aa9.02□□□□□ -0.97
USP28-215ENST00000545608 SNX21Q969T3 373 aa9.02□□□□□ -0.97
USP28-215ENST00000545608 MARVELD3Q96A59 401 aa9.02□□□□□ -0.97
USP28-215ENST00000545608 ELMO3Q96BJ8 720 aa9.02□□□□□ -0.97
USP28-215ENST00000545608 CEP295NLQ96MC4 621 aa9.02□□□□□ -0.97
USP28-215ENST00000545608 B3GNT5Q9BYG0 378 aa9.02□□□□□ -0.97
USP28-215ENST00000545608 ZNF518BQ9C0D4 1074 aa9.02□□□□□ -0.97
USP28-215ENST00000545608 XYLT2Q9H1B5 865 aa9.02□□□□□ -0.97
USP28-215ENST00000545608 RXFP3Q9NSD7 469 aa9.02□□□□□ -0.97
USP28-215ENST00000545608 NXF1Q9UBU9 619 aaKnown RBP9.02□□□□□ -0.97
USP28-215ENST00000545608 KIF26AQ9ULI4 1882 aaPredicted RBP9.02□□□□□ -0.97
USP28-215ENST00000545608 UBE4BO95155 1302 aa9.02□□□□□ -0.97
USP28-215ENST00000545608 PVALEFA0A1B0GWK0 134 aa9.01□□□□□ -0.97
USP28-215ENST00000545608 A8MXQ7 604 aa9.01□□□□□ -0.97
USP28-215ENST00000545608 SCAMP3O14828 347 aaKnown RBP9.01□□□□□ -0.97
USP28-215ENST00000545608 DCLK1O15075 740 aa9.01□□□□□ -0.97
USP28-215ENST00000545608 EXOC3O60645 756 aa9.01□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms