RNA–Protein interactions for RNA: ENST00000542310.1

VPS33A-206, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS33A, Length 756 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-206ENST00000542310 NR1H3Q13133 447 aa16.62■□□□□ 0.25
VPS33A-206ENST00000542310 PUM1Q14671 1186 aaKnown RBP eCLIP16.62■□□□□ 0.25
VPS33A-206ENST00000542310 SGSM1Q2NKQ1 1148 aa16.62■□□□□ 0.25
VPS33A-206ENST00000542310 FAM35AQ86V20 835 aa16.62■□□□□ 0.25
VPS33A-206ENST00000542310 DDX42Q86XP3 938 aaKnown RBP eCLIP16.62■□□□□ 0.25
VPS33A-206ENST00000542310 NUP93Q8N1F7 819 aa16.62■□□□□ 0.25
VPS33A-206ENST00000542310 CCDC26Q8TAB7 109 aa16.62■□□□□ 0.25
VPS33A-206ENST00000542310 SMARCD1Q96GM5 515 aa16.62■□□□□ 0.25
VPS33A-206ENST00000542310 B3GNT5Q9BYG0 378 aa16.62■□□□□ 0.25
VPS33A-206ENST00000542310 DMAP1Q9NPF5 467 aaPredicted RBP16.62■□□□□ 0.25
VPS33A-206ENST00000542310 TMEM30AQ9NV96 361 aa16.62■□□□□ 0.25
VPS33A-206ENST00000542310 DLL3Q9NYJ7 618 aa16.62■□□□□ 0.25
VPS33A-206ENST00000542310 WNT6Q9Y6F9 365 aa16.62■□□□□ 0.25
VPS33A-206ENST00000542310 PRR5-ARHGAP8B1AHC4 643 aa16.61■□□□□ 0.25
VPS33A-206ENST00000542310 CLSTN1O94985 981 aa16.61■□□□□ 0.25
VPS33A-206ENST00000542310 RETP07949 1114 aa16.61■□□□□ 0.25
VPS33A-206ENST00000542310 TUBP50607 506 aa16.61■□□□□ 0.25
VPS33A-206ENST00000542310 CACNA2D1P54289 1103 aa16.61■□□□□ 0.25
VPS33A-206ENST00000542310 ARHGAP8P85298 464 aa16.61■□□□□ 0.25
VPS33A-206ENST00000542310 DMWDQ09019 674 aa16.61■□□□□ 0.25
VPS33A-206ENST00000542310 SIM2Q14190 667 aaPredicted RBP16.61■□□□□ 0.25
VPS33A-206ENST00000542310 CEP135Q66GS9 1140 aa16.61■□□□□ 0.25
VPS33A-206ENST00000542310 SCARA5Q6ZMJ2 495 aa16.61■□□□□ 0.25
VPS33A-206ENST00000542310 KRBA2Q6ZNG9 492 aa16.61■□□□□ 0.25
VPS33A-206ENST00000542310 INTS8Q75QN2 995 aaKnown RBP16.61■□□□□ 0.25
VPS33A-206ENST00000542310 UNC93AQ86WB7 457 aa16.61■□□□□ 0.25
VPS33A-206ENST00000542310 GUF1Q8N442 669 aaKnown RBP16.61■□□□□ 0.25
VPS33A-206ENST00000542310 CD101Q93033 1021 aa16.61■□□□□ 0.25
VPS33A-206ENST00000542310 CCDC34Q96HJ3 373 aa16.61■□□□□ 0.25
VPS33A-206ENST00000542310 C2orf42Q9NWW7 574 aa16.61■□□□□ 0.25
VPS33A-206ENST00000542310 COMMD8Q9NX08 183 aa16.61■□□□□ 0.25
VPS33A-206ENST00000542310 LEFTY2O00292 366 aa16.6■□□□□ 0.25
VPS33A-206ENST00000542310 CLDN5O00501 218 aa16.6■□□□□ 0.25
VPS33A-206ENST00000542310 SLC9A3R1O14745 358 aaPredicted RBP16.6■□□□□ 0.25
VPS33A-206ENST00000542310 RNF40O75150 1001 aa16.6■□□□□ 0.25
VPS33A-206ENST00000542310 ASS1P00966 412 aaKnown RBP16.6■□□□□ 0.25
VPS33A-206ENST00000542310 EGFP01133 1207 aa16.6■□□□□ 0.25
VPS33A-206ENST00000542310 PRR29P0C7W0 189 aa16.6■□□□□ 0.25
VPS33A-206ENST00000542310 TRIM21P19474 475 aaKnown RBP16.6■□□□□ 0.25
VPS33A-206ENST00000542310 NR2F2P24468 414 aa16.6■□□□□ 0.25
VPS33A-206ENST00000542310 YWHAQP27348 245 aa16.6■□□□□ 0.25
VPS33A-206ENST00000542310 PIK3CAP42336 1068 aa16.6■□□□□ 0.25
VPS33A-206ENST00000542310 RAP1GAPP47736 663 aa16.6■□□□□ 0.25
VPS33A-206ENST00000542310 DLG4P78352 724 aa16.6■□□□□ 0.25
VPS33A-206ENST00000542310 TAF10Q12962 218 aa16.6■□□□□ 0.25
VPS33A-206ENST00000542310 SNX30Q5VWJ9 437 aa16.6■□□□□ 0.25
VPS33A-206ENST00000542310 PKN3Q6P5Z2 889 aa16.6■□□□□ 0.25
VPS33A-206ENST00000542310 PRR23BQ6ZRT6 265 aa16.6■□□□□ 0.25
VPS33A-206ENST00000542310 SV2AQ7L0J3 742 aa16.6■□□□□ 0.25
VPS33A-206ENST00000542310 ACDQ96AP0 544 aa16.6■□□□□ 0.25
VPS33A-206ENST00000542310 DUSP9Q99956 384 aaKnown RBP16.6■□□□□ 0.25
VPS33A-206ENST00000542310 IMPG2Q9BZV3 1241 aa16.6■□□□□ 0.25
VPS33A-206ENST00000542310 SDCBP2Q9H190 292 aa16.6■□□□□ 0.25
VPS33A-206ENST00000542310 IL37Q9NZH6 218 aa16.6■□□□□ 0.25
VPS33A-206ENST00000542310 SLC8A2Q9UPR5 921 aa16.6■□□□□ 0.25
VPS33A-206ENST00000542310 FAM92AA1XBS5 289 aa16.59■□□□□ 0.25
VPS33A-206ENST00000542310 TNFRSF10BO14763 440 aa16.59■□□□□ 0.25
VPS33A-206ENST00000542310 HRO43593 1189 aa16.59■□□□□ 0.25
VPS33A-206ENST00000542310 AKAP3O75969 853 aa16.59■□□□□ 0.25
VPS33A-206ENST00000542310 TGM1P22735 817 aa16.59■□□□□ 0.25
VPS33A-206ENST00000542310 RPL13P26373 211 aaKnown RBP16.59■□□□□ 0.25
VPS33A-206ENST00000542310 ASPAP45381 313 aa16.59■□□□□ 0.25
VPS33A-206ENST00000542310 GALK1P51570 392 aa16.59■□□□□ 0.25
VPS33A-206ENST00000542310 VAMP7P51809 220 aa16.59■□□□□ 0.25
VPS33A-206ENST00000542310 SLC5A3P53794 718 aa16.59■□□□□ 0.25
VPS33A-206ENST00000542310 CDH8P55286 799 aa16.59■□□□□ 0.25
VPS33A-206ENST00000542310 ZXDBP98169 803 aa16.59■□□□□ 0.25
VPS33A-206ENST00000542310 INCA1Q0VD86 236 aa16.59■□□□□ 0.25
VPS33A-206ENST00000542310 C1orf220Q5T0J3 134 aa16.59■□□□□ 0.25
VPS33A-206ENST00000542310 ARHGAP30Q7Z6I6 1101 aaPredicted RBP16.59■□□□□ 0.25
VPS33A-206ENST00000542310 CAMKK1Q8N5S9 505 aa16.59■□□□□ 0.25
VPS33A-206ENST00000542310 FBXO32Q969P5 355 aa16.59■□□□□ 0.25
VPS33A-206ENST00000542310 MED10Q9BTT4 135 aa16.59■□□□□ 0.25
VPS33A-206ENST00000542310 KRT82Q9NSB4 513 aa16.59■□□□□ 0.25
VPS33A-206ENST00000542310 CPQQ9Y646 472 aa16.59■□□□□ 0.25
VPS33A-206ENST00000542310 FOXD2O60548 495 aaPredicted RBP16.58■□□□□ 0.24
VPS33A-206ENST00000542310 HLA-DRAP01903 254 aa16.58■□□□□ 0.24
VPS33A-206ENST00000542310 EIF2DP41214 584 aaKnown RBP16.58■□□□□ 0.24
VPS33A-206ENST00000542310 MCCD1P59942 119 aaPredicted RBP16.58■□□□□ 0.24
VPS33A-206ENST00000542310 EDRF1Q3B7T1 1238 aa16.58■□□□□ 0.24
VPS33A-206ENST00000542310 ZCWPW2Q504Y3 356 aa16.58■□□□□ 0.24
VPS33A-206ENST00000542310 HEATR6Q6AI08 1181 aaKnown RBP16.58■□□□□ 0.24
VPS33A-206ENST00000542310 PAQR9Q6ZVX9 377 aa16.58■□□□□ 0.24
VPS33A-206ENST00000542310 SYT13Q7L8C5 426 aa16.58■□□□□ 0.24
VPS33A-206ENST00000542310 DGLUCYQ7Z3D6 616 aa16.58■□□□□ 0.24
VPS33A-206ENST00000542310 FUKQ8N0W3 1084 aa16.58■□□□□ 0.24
VPS33A-206ENST00000542310 CRYBG2Q8N1P7 616 aa16.58■□□□□ 0.24
VPS33A-206ENST00000542310 TTC16Q8NEE8 873 aa16.58■□□□□ 0.24
VPS33A-206ENST00000542310 GAB3Q8WWW8 586 aa16.58■□□□□ 0.24
VPS33A-206ENST00000542310 CHAMP1Q96JM3 812 aa16.58■□□□□ 0.24
VPS33A-206ENST00000542310 RNF38Q9H0F5 515 aa16.58■□□□□ 0.24
VPS33A-206ENST00000542310 GOLPH3LQ9H4A5 285 aa16.58■□□□□ 0.24
VPS33A-206ENST00000542310 FBRSL1Q9HCM7 1045 aaKnown RBP16.58■□□□□ 0.24
VPS33A-206ENST00000542310 CSNK1G1Q9HCP0 422 aa16.58■□□□□ 0.24
VPS33A-206ENST00000542310 USP18Q9UMW8 372 aa16.58■□□□□ 0.24
VPS33A-206ENST00000542310 AP1G2O75843 785 aa16.57■□□□□ 0.24
VPS33A-206ENST00000542310 ZNF202O95125 648 aa16.57■□□□□ 0.24
VPS33A-206ENST00000542310 CYP17A1P05093 508 aa16.57■□□□□ 0.24
VPS33A-206ENST00000542310 ZDHHC11BP0C7U3 371 aa16.57■□□□□ 0.24
VPS33A-206ENST00000542310 KRT13P13646 458 aa16.57■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms