RNA–Protein interactions for RNA: ENST00000542238.5

RTN3-211, Transcript of reticulon 3, humanhuman

TSL 3

Gene RTN3, Length 735 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-211ENST00000542238 LRRC27Q9C0I9 530 aa16.45■□□□□ 0.22
RTN3-211ENST00000542238 RNF38Q9H0F5 515 aa16.45■□□□□ 0.22
RTN3-211ENST00000542238 POLMQ9NP87 494 aaPredicted RBP16.45■□□□□ 0.22
RTN3-211ENST00000542238 SMPD4Q9NXE4 827 aa16.45■□□□□ 0.22
RTN3-211ENST00000542238 BCCIPQ9P287 314 aaKnown RBP eCLIP16.45■□□□□ 0.22
RTN3-211ENST00000542238 PI4KAP42356 2102 aa16.45■□□□□ 0.22
RTN3-211ENST00000542238 CACNA1GO43497 2377 aa16.44■□□□□ 0.22
RTN3-211ENST00000542238 PATE3B3GLJ2 98 aa16.44■□□□□ 0.22
RTN3-211ENST00000542238 KAT7O95251 611 aa16.44■□□□□ 0.22
RTN3-211ENST00000542238 KLF8O95600 359 aaPredicted RBP16.44■□□□□ 0.22
RTN3-211ENST00000542238 IRX4P78413 519 aa16.44■□□□□ 0.22
RTN3-211ENST00000542238 LMAN2Q12907 356 aa16.44■□□□□ 0.22
RTN3-211ENST00000542238 TAF10Q12962 218 aa16.44■□□□□ 0.22
RTN3-211ENST00000542238 RESTQ13127 1097 aa16.44■□□□□ 0.22
RTN3-211ENST00000542238 BYSLQ13895 437 aaKnown RBP16.44■□□□□ 0.22
RTN3-211ENST00000542238 GAB4Q2WGN9 574 aa16.44■□□□□ 0.22
RTN3-211ENST00000542238 UAP1L1Q3KQV9 507 aa16.44■□□□□ 0.22
RTN3-211ENST00000542238 EOGTQ5NDL2 527 aa16.44■□□□□ 0.22
RTN3-211ENST00000542238 UNQ6494/PRO21346Q6UXR6 183 aa16.44■□□□□ 0.22
RTN3-211ENST00000542238 TRAPPC11Q7Z392 1133 aa16.44■□□□□ 0.22
RTN3-211ENST00000542238 ALLCQ8N6M5 410 aa16.44■□□□□ 0.22
RTN3-211ENST00000542238 TXNDC5Q8NBS9 432 aaKnown RBP16.44■□□□□ 0.22
RTN3-211ENST00000542238 OR6B3Q8NGW1 331 aa16.44■□□□□ 0.22
RTN3-211ENST00000542238 OLIG1Q8TAK6 271 aa16.44■□□□□ 0.22
RTN3-211ENST00000542238 NUSAP1Q9BXS6 441 aaKnown RBP16.44■□□□□ 0.22
RTN3-211ENST00000542238 HSPBP1Q9NZL4 362 aa16.44■□□□□ 0.22
RTN3-211ENST00000542238 CFAP97Q9P2B7 532 aa16.44■□□□□ 0.22
RTN3-211ENST00000542238 TBC1D14Q9P2M4 693 aa16.44■□□□□ 0.22
RTN3-211ENST00000542238 FRYQ5TBA9 3013 aa16.44■□□□□ 0.22
RTN3-211ENST00000542238 MYO18AQ92614 2054 aaKnown RBP16.44■□□□□ 0.22
RTN3-211ENST00000542238 ZFHX4Q86UP3 3567 aa16.43■□□□□ 0.22
RTN3-211ENST00000542238 PALM2-AKAP2B1ALY0 433 aaPredicted RBP16.43■□□□□ 0.22
RTN3-211ENST00000542238 CDX4O14627 284 aaPredicted RBP16.43■□□□□ 0.22
RTN3-211ENST00000542238 TACC1O75410 805 aa16.43■□□□□ 0.22
RTN3-211ENST00000542238 OLFM2O95897 454 aa16.43■□□□□ 0.22
RTN3-211ENST00000542238 OAS1P00973 400 aaKnown RBP16.43■□□□□ 0.22
RTN3-211ENST00000542238 FAM163BP0C2L3 166 aa16.43■□□□□ 0.22
RTN3-211ENST00000542238 MBL2P11226 248 aaPredicted RBP16.43■□□□□ 0.22
RTN3-211ENST00000542238 TNNI1P19237 187 aa16.43■□□□□ 0.22
RTN3-211ENST00000542238 TIE1P35590 1138 aa16.43■□□□□ 0.22
RTN3-211ENST00000542238 GRIA2P42262 883 aa16.43■□□□□ 0.22
RTN3-211ENST00000542238 DPP6P42658 865 aa16.43■□□□□ 0.22
RTN3-211ENST00000542238 SLC6A11P48066 632 aa16.43■□□□□ 0.22
RTN3-211ENST00000542238 TNNC1P63316 161 aa16.43■□□□□ 0.22
RTN3-211ENST00000542238 TRIM61Q5EBN2 209 aa16.43■□□□□ 0.22
RTN3-211ENST00000542238 RHBDF2Q6PJF5 856 aa16.43■□□□□ 0.22
RTN3-211ENST00000542238 TMEM92Q6UXU6 159 aa16.43■□□□□ 0.22
RTN3-211ENST00000542238 PDILTQ8N807 584 aa16.43■□□□□ 0.22
RTN3-211ENST00000542238 IL17RCQ8NAC3 791 aa16.43■□□□□ 0.22
RTN3-211ENST00000542238 FNBP1Q96RU3 617 aa16.43■□□□□ 0.22
RTN3-211ENST00000542238 MRPL45Q9BRJ2 306 aaKnown RBP16.43■□□□□ 0.22
RTN3-211ENST00000542238 ELOVL4Q9GZR5 314 aa16.43■□□□□ 0.22
RTN3-211ENST00000542238 ARHGEF4Q9NR80 690 aa16.43■□□□□ 0.22
RTN3-211ENST00000542238 EVLQ9UI08 416 aaPredicted RBP16.43■□□□□ 0.22
RTN3-211ENST00000542238 GON4LQ3T8J9 2241 aa16.43■□□□□ 0.22
RTN3-211ENST00000542238 ASCC3Q8N3C0 2202 aaKnown RBP16.43■□□□□ 0.22
RTN3-211ENST00000542238 CEP192Q8TEP8 1941 aa16.43■□□□□ 0.22
RTN3-211ENST00000542238 PLXND1Q9Y4D7 1925 aa16.43■□□□□ 0.22
RTN3-211ENST00000542238 TNRC6BQ9UPQ9 1833 aaKnown RBP16.42■□□□□ 0.22
RTN3-211ENST00000542238 ANTXRLA6NF34 631 aa16.42■□□□□ 0.22
RTN3-211ENST00000542238 C1QTNF9BB2RNN3 333 aa16.42■□□□□ 0.22
RTN3-211ENST00000542238 SGK1O00141 431 aa16.42■□□□□ 0.22
RTN3-211ENST00000542238 TNFRSF10BO14763 440 aa16.42■□□□□ 0.22
RTN3-211ENST00000542238 SCAMP3O14828 347 aaKnown RBP16.42■□□□□ 0.22
RTN3-211ENST00000542238 C1QTNF9P0C862 333 aa16.42■□□□□ 0.22
RTN3-211ENST00000542238 DLATP10515 647 aaKnown RBP16.42■□□□□ 0.22
RTN3-211ENST00000542238 ADH5P11766 374 aa16.42■□□□□ 0.22
RTN3-211ENST00000542238 PTPN1P18031 435 aaKnown RBP16.42■□□□□ 0.22
RTN3-211ENST00000542238 P2RY2P41231 377 aa16.42■□□□□ 0.22
RTN3-211ENST00000542238 TNFRSF4P43489 277 aa16.42■□□□□ 0.22
RTN3-211ENST00000542238 IFRD2Q12894 506 aaPredicted RBP16.42■□□□□ 0.22
RTN3-211ENST00000542238 SLC39A14Q15043 492 aa16.42■□□□□ 0.22
RTN3-211ENST00000542238 SNRNP35Q16560 246 aaKnown RBP16.42■□□□□ 0.22
RTN3-211ENST00000542238 WDR72Q3MJ13 1102 aa16.42■□□□□ 0.22
RTN3-211ENST00000542238 FAM173BQ6P4H8 233 aa16.42■□□□□ 0.22
RTN3-211ENST00000542238 PGBD3Q8N328 593 aa16.42■□□□□ 0.22
RTN3-211ENST00000542238 PDZD8Q8NEN9 1154 aa16.42■□□□□ 0.22
RTN3-211ENST00000542238 HMGB4Q8WW32 186 aa16.42■□□□□ 0.22
RTN3-211ENST00000542238 RLN3Q8WXF3 142 aa16.42■□□□□ 0.22
RTN3-211ENST00000542238 IGF2RP11717 2491 aa16.41■□□□□ 0.22
RTN3-211ENST00000542238 A0A087X0B3 334 aa16.41■□□□□ 0.22
RTN3-211ENST00000542238 A0A0A0MRY4 1105 aa16.41■□□□□ 0.22
RTN3-211ENST00000542238 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa16.41■□□□□ 0.22
RTN3-211ENST00000542238 E2F8A0AVK6 867 aa16.41■□□□□ 0.22
RTN3-211ENST00000542238 A8MXQ7 604 aa16.41■□□□□ 0.22
RTN3-211ENST00000542238 EIF3DO15371 548 aaKnown RBP eCLIP16.41■□□□□ 0.22
RTN3-211ENST00000542238 RTN3O95197 1032 aaPredicted RBP16.41■□□□□ 0.22
RTN3-211ENST00000542238 CST3P01034 146 aaPredicted RBP16.41■□□□□ 0.22
RTN3-211ENST00000542238 HNRNPLP14866 589 aaKnown RBP eCLIP16.41■□□□□ 0.222e-12■■■□□ 15.2
RTN3-211ENST00000542238 YWHAQP27348 245 aa16.41■□□□□ 0.22
RTN3-211ENST00000542238 AMPD3Q01432 767 aa16.41■□□□□ 0.22
RTN3-211ENST00000542238 GAD2Q05329 585 aa16.41■□□□□ 0.22
RTN3-211ENST00000542238 KDSRQ06136 332 aa16.41■□□□□ 0.22
RTN3-211ENST00000542238 TRPC3Q13507 836 aa16.41■□□□□ 0.22
RTN3-211ENST00000542238 CUL4AQ13619 759 aa16.41■□□□□ 0.22
RTN3-211ENST00000542238 PREPLQ4J6C6 727 aaPredicted RBP16.41■□□□□ 0.22
RTN3-211ENST00000542238 SPDYCQ5MJ68 293 aa16.41■□□□□ 0.22
RTN3-211ENST00000542238 BTBD8Q5XKL5 378 aa16.41■□□□□ 0.22
RTN3-211ENST00000542238 NUDT18Q6ZVK8 323 aa16.41■□□□□ 0.22
RTN3-211ENST00000542238 ARMCX6Q7L4S7 300 aa16.41■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms