RNA–Protein interactions for RNA: ENST00000542033.5

USP28-210, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 852 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-210ENST00000542033 RAPGEF1Q13905 1077 aa3.86□□□□□ -1.79
USP28-210ENST00000542033 LONRF1Q17RB8 773 aa3.86□□□□□ -1.79
USP28-210ENST00000542033 TREML2Q5T2D2 321 aa3.86□□□□□ -1.79
USP28-210ENST00000542033 CERCAMQ5T4B2 595 aa3.86□□□□□ -1.79
USP28-210ENST00000542033 LIX1LQ8IVB5 337 aa3.86□□□□□ -1.79
USP28-210ENST00000542033 SIMC1Q8NDZ2 872 aa3.86□□□□□ -1.79
USP28-210ENST00000542033 PARD3BQ8TEW8 1205 aa3.86□□□□□ -1.79
USP28-210ENST00000542033 PPM1EQ8WY54 764 aa3.86□□□□□ -1.79
USP28-210ENST00000542033 PDLIM2Q96JY6 352 aa3.86□□□□□ -1.79
USP28-210ENST00000542033 DHX36Q9H2U1 1008 aaKnown RBP3.86□□□□□ -1.79
USP28-210ENST00000542033 SYNPO2LQ9H987 977 aa3.86□□□□□ -1.79
USP28-210ENST00000542033 GBA2Q9HCG7 927 aaPredicted RBP3.86□□□□□ -1.79
USP28-210ENST00000542033 NLRC4Q9NPP4 1024 aa3.86□□□□□ -1.79
USP28-210ENST00000542033 TBC1D23Q9NUY8 699 aa3.86□□□□□ -1.79
USP28-210ENST00000542033 SLC17A6Q9P2U8 582 aa3.86□□□□□ -1.79
USP28-210ENST00000542033 CCNL1Q9UK58 526 aaPredicted RBP3.86□□□□□ -1.79
USP28-210ENST00000542033 PHTF1Q9UMS5 762 aa3.86□□□□□ -1.79
USP28-210ENST00000542033 DAAM1Q9Y4D1 1078 aa3.86□□□□□ -1.79
USP28-210ENST00000542033 A1L4Q6 167 aa3.85□□□□□ -1.79
USP28-210ENST00000542033 AQP7P3A6NL99 342 aa3.85□□□□□ -1.79
USP28-210ENST00000542033 PIAS2O75928 621 aa3.85□□□□□ -1.79
USP28-210ENST00000542033 ONECUT2O95948 504 aa3.85□□□□□ -1.79
USP28-210ENST00000542033 CSF1RP07333 972 aa3.85□□□□□ -1.79
USP28-210ENST00000542033 IL6RP08887 468 aaPredicted RBP3.85□□□□□ -1.79
USP28-210ENST00000542033 EBLN1P0CF75 366 aa3.85□□□□□ -1.79
USP28-210ENST00000542033 IL1R1P14778 569 aa3.85□□□□□ -1.79
USP28-210ENST00000542033 NDUFB7P17568 137 aa3.85□□□□□ -1.79
USP28-210ENST00000542033 PAX3P23760 479 aa3.85□□□□□ -1.79
USP28-210ENST00000542033 ADORA2AP29274 412 aa3.85□□□□□ -1.79
USP28-210ENST00000542033 MTHFSP49914 203 aa3.85□□□□□ -1.79
USP28-210ENST00000542033 CLCN2P51788 898 aa3.85□□□□□ -1.79
USP28-210ENST00000542033 CACNA2D1P54289 1103 aa3.85□□□□□ -1.79
USP28-210ENST00000542033 PDE1AP54750 535 aa3.85□□□□□ -1.79
USP28-210ENST00000542033 SP2Q02086 613 aa3.85□□□□□ -1.79
USP28-210ENST00000542033 CCNIQ14094 377 aa3.85□□□□□ -1.79
USP28-210ENST00000542033 KRT72Q14CN4 511 aa3.85□□□□□ -1.79
USP28-210ENST00000542033 FAM153CQ494X1 144 aa3.85□□□□□ -1.79
USP28-210ENST00000542033 BEND5Q7L4P6 421 aa3.85□□□□□ -1.79
USP28-210ENST00000542033 ZNF551Q7Z340 670 aaPredicted RBP3.85□□□□□ -1.79
USP28-210ENST00000542033 MAVSQ7Z434 540 aa3.85□□□□□ -1.79
USP28-210ENST00000542033 DPP9Q86TI2 863 aa3.85□□□□□ -1.79
USP28-210ENST00000542033 PRIMA1Q86XR5 153 aa3.85□□□□□ -1.79
USP28-210ENST00000542033 ADGRG3Q86Y34 549 aa3.85□□□□□ -1.79
USP28-210ENST00000542033 IZUMO1Q8IYV9 350 aa3.85□□□□□ -1.79
USP28-210ENST00000542033 ABRAQ8N0Z2 381 aa3.85□□□□□ -1.79
USP28-210ENST00000542033 ATP11CQ8NB49 1132 aa3.85□□□□□ -1.79
USP28-210ENST00000542033 DNAJB14Q8TBM8 379 aa3.85□□□□□ -1.79
USP28-210ENST00000542033 PNISRQ8TF01 805 aaKnown RBP3.85□□□□□ -1.79
USP28-210ENST00000542033 TMEM171Q8WVE6 324 aa3.85□□□□□ -1.79
USP28-210ENST00000542033 XAGE5Q8WWM1 108 aa3.85□□□□□ -1.79
USP28-210ENST00000542033 GLG1Q92896 1179 aa3.85□□□□□ -1.79
USP28-210ENST00000542033 MYD88Q99836 296 aa3.85□□□□□ -1.79
USP28-210ENST00000542033 FAM83DQ9H4H8 585 aa3.85□□□□□ -1.79
USP28-210ENST00000542033 STARD7Q9NQZ5 370 aa3.85□□□□□ -1.79
USP28-210ENST00000542033 ARHGEF3Q9NR81 526 aa3.85□□□□□ -1.79
USP28-210ENST00000542033 FOXJ2Q9P0K8 574 aa3.85□□□□□ -1.79
USP28-210ENST00000542033 DKK3Q9UBP4 350 aa3.85□□□□□ -1.79
USP28-210ENST00000542033 CCDC189A1A4V9 331 aa3.84□□□□□ -1.79
USP28-210ENST00000542033 LINC00473A8K010 186 aa3.84□□□□□ -1.79
USP28-210ENST00000542033 GCOM1H8Y6P7 765 aaPredicted RBP3.84□□□□□ -1.79
USP28-210ENST00000542033 OVOL3O00110 214 aa3.84□□□□□ -1.79
USP28-210ENST00000542033 PSMD9O00233 223 aa3.84□□□□□ -1.79
USP28-210ENST00000542033 APOL1O14791 398 aa3.84□□□□□ -1.79
USP28-210ENST00000542033 RRP9O43818 475 aaKnown RBP3.84□□□□□ -1.79
USP28-210ENST00000542033 SH3BP5O60239 455 aa3.84□□□□□ -1.79
USP28-210ENST00000542033 TCEA3O75764 348 aa3.84□□□□□ -1.79
USP28-210ENST00000542033 FESP07332 822 aa3.84□□□□□ -1.79
USP28-210ENST00000542033 TSHRP16473 764 aa3.84□□□□□ -1.79
USP28-210ENST00000542033 BTF3P20290 206 aaKnown RBP3.84□□□□□ -1.79
USP28-210ENST00000542033 LIPAP38571 399 aa3.84□□□□□ -1.79
USP28-210ENST00000542033 ATXN1P54253 815 aaKnown RBP3.84□□□□□ -1.79
USP28-210ENST00000542033 SOX10P56693 466 aa3.84□□□□□ -1.79
USP28-210ENST00000542033 STK3Q13188 491 aa3.84□□□□□ -1.79
USP28-210ENST00000542033 RALBP1Q15311 655 aa3.84□□□□□ -1.79
USP28-210ENST00000542033 PTCHD3Q3KNS1 767 aa3.84□□□□□ -1.79
USP28-210ENST00000542033 INO80DQ53TQ3 878 aaPredicted RBP3.84□□□□□ -1.79
USP28-210ENST00000542033 FAM83BQ5T0W9 1011 aa3.84□□□□□ -1.79
USP28-210ENST00000542033 AKNAD1Q5T1N1 836 aa3.84□□□□□ -1.79
USP28-210ENST00000542033 KLHDC7AQ5VTJ3 777 aa3.84□□□□□ -1.79
USP28-210ENST00000542033 RD3Q7Z3Z2 195 aa3.84□□□□□ -1.79
USP28-210ENST00000542033 KCTD20Q7Z5Y7 419 aa3.84□□□□□ -1.79
USP28-210ENST00000542033 FAM186BQ8IYM0 893 aa3.84□□□□□ -1.79
USP28-210ENST00000542033 LRRC71Q8N4P6 559 aa3.84□□□□□ -1.79
USP28-210ENST00000542033 CCDC150Q8NCX0 1101 aa3.84□□□□□ -1.79
USP28-210ENST00000542033 RFKQ969G6 155 aa3.84□□□□□ -1.79
USP28-210ENST00000542033 EVI5LQ96CN4 794 aa3.84□□□□□ -1.79
USP28-210ENST00000542033 R3HDM4Q96D70 268 aa3.84□□□□□ -1.79
USP28-210ENST00000542033 ZC3H10Q96K80 434 aaKnown RBP3.84□□□□□ -1.79
USP28-210ENST00000542033 CCDC138Q96M89 665 aa3.84□□□□□ -1.79
USP28-210ENST00000542033 HAPLN3Q96S86 360 aa3.84□□□□□ -1.79
USP28-210ENST00000542033 SELENOOQ9BVL4 669 aa3.84□□□□□ -1.79
USP28-210ENST00000542033 DPCDQ9BVM2 203 aaPredicted RBP3.84□□□□□ -1.79
USP28-210ENST00000542033 PLCB1Q9NQ66 1216 aa3.84□□□□□ -1.79
USP28-210ENST00000542033 HEYLQ9NQ87 328 aaPredicted RBP3.84□□□□□ -1.79
USP28-210ENST00000542033 DNMT3BQ9UBC3 853 aaKnown RBP3.84□□□□□ -1.79
USP28-210ENST00000542033 RGS17Q9UGC6 210 aaPredicted RBP3.84□□□□□ -1.79
USP28-210ENST00000542033 PADI4Q9UM07 663 aa3.84□□□□□ -1.79
USP28-210ENST00000542033 ST3GAL5Q9UNP4 418 aa3.84□□□□□ -1.79
USP28-210ENST00000542033 USP22Q9UPT9 525 aa3.84□□□□□ -1.79
USP28-210ENST00000542033 SH2B3Q9UQQ2 575 aa3.84□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms