RNA–Protein interactions for RNA: ENST00000541259.1

DDX55-208, Transcript of DEAD-box helicase 55, humanhuman

TSL 3

Gene DDX55, Length 460 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-208ENST00000541259 CCDC112Q8NEF3 446 aa9.87□□□□□ -0.83
DDX55-208ENST00000541259 ZNF461Q8TAF7 563 aa9.87□□□□□ -0.83
DDX55-208ENST00000541259 GPR152Q8TDT2 470 aa9.87□□□□□ -0.83
DDX55-208ENST00000541259 SLC35F5Q8WV83 523 aa9.87□□□□□ -0.83
DDX55-208ENST00000541259 ATRIPQ8WXE1 791 aa9.87□□□□□ -0.83
DDX55-208ENST00000541259 LRCH3Q96II8 777 aa9.87□□□□□ -0.83
DDX55-208ENST00000541259 ZFRQ96KR1 1074 aaKnown RBP9.87□□□□□ -0.83
DDX55-208ENST00000541259 PACSIN1Q9BY11 444 aa9.87□□□□□ -0.83
DDX55-208ENST00000541259 KRTAP3-3Q9BYR6 98 aa9.87□□□□□ -0.83
DDX55-208ENST00000541259 KRTAP3-2Q9BYR7 98 aa9.87□□□□□ -0.83
DDX55-208ENST00000541259 FAM117AQ9C073 453 aa9.87□□□□□ -0.83
DDX55-208ENST00000541259 HESX1Q9UBX0 185 aa9.87□□□□□ -0.83
DDX55-208ENST00000541259 AFF4Q9UHB7 1163 aaKnown RBP9.87□□□□□ -0.83
DDX55-208ENST00000541259 NAGPAQ9UK23 515 aa9.87□□□□□ -0.83
DDX55-208ENST00000541259 PYCARDQ9ULZ3 195 aa9.87□□□□□ -0.83
DDX55-208ENST00000541259 NOTCH4Q99466 2003 aa9.87□□□□□ -0.83
DDX55-208ENST00000541259 C2orf16Q68DN1 1984 aa9.86□□□□□ -0.83
DDX55-208ENST00000541259 REV3LO60673 3130 aa9.86□□□□□ -0.83
DDX55-208ENST00000541259 EIF3CLB5ME19 914 aaKnown RBP9.86□□□□□ -0.83
DDX55-208ENST00000541259 F8VP50 259 aa9.86□□□□□ -0.83
DDX55-208ENST00000541259 ARHGAP6O43182 974 aa9.86□□□□□ -0.83
DDX55-208ENST00000541259 RTN2O75298 545 aa9.86□□□□□ -0.83
DDX55-208ENST00000541259 LCA5LO95447 670 aa9.86□□□□□ -0.83
DDX55-208ENST00000541259 LSM8O95777 96 aaKnown RBP9.86□□□□□ -0.83
DDX55-208ENST00000541259 FTLP02792 175 aaPredicted RBP9.86□□□□□ -0.83
DDX55-208ENST00000541259 HAPLN1P10915 354 aaPredicted RBP9.86□□□□□ -0.83
DDX55-208ENST00000541259 ATF2P15336 505 aa9.86□□□□□ -0.83
DDX55-208ENST00000541259 EPCAMP16422 314 aa9.86□□□□□ -0.83
DDX55-208ENST00000541259 NPR3P17342 541 aa9.86□□□□□ -0.83
DDX55-208ENST00000541259 ANXA13P27216 316 aa9.86□□□□□ -0.83
DDX55-208ENST00000541259 CYLC1P35663 651 aaPredicted RBP9.86□□□□□ -0.83
DDX55-208ENST00000541259 GRIK1P39086 918 aa9.86□□□□□ -0.83
DDX55-208ENST00000541259 BCAT1P54687 386 aa9.86□□□□□ -0.83
DDX55-208ENST00000541259 CREMQ03060 361 aa9.86□□□□□ -0.83
DDX55-208ENST00000541259 CENPCQ03188 943 aa9.86□□□□□ -0.83
DDX55-208ENST00000541259 GRIN2CQ14957 1233 aa9.86□□□□□ -0.83
DDX55-208ENST00000541259 MGAT5BQ3V5L5 792 aa9.86□□□□□ -0.83
DDX55-208ENST00000541259 CFAP221Q4G0U5 840 aa9.86□□□□□ -0.83
DDX55-208ENST00000541259 PTPN20Q4JDL3 420 aa9.86□□□□□ -0.83
DDX55-208ENST00000541259 TPGS2Q68CL5 300 aa9.86□□□□□ -0.83
DDX55-208ENST00000541259 LLGL2Q6P1M3 1020 aa9.86□□□□□ -0.83
DDX55-208ENST00000541259 TRIM72Q6ZMU5 477 aa9.86□□□□□ -0.83
DDX55-208ENST00000541259 GPRIN1Q7Z2K8 1008 aa9.86□□□□□ -0.83
DDX55-208ENST00000541259 PIGZQ86VD9 579 aa9.86□□□□□ -0.83
DDX55-208ENST00000541259 VPS36Q86VN1 386 aa9.86□□□□□ -0.83
DDX55-208ENST00000541259 SCN4BQ8IWT1 228 aa9.86□□□□□ -0.83
DDX55-208ENST00000541259 TMEM35BQ8NCS4 154 aa9.86□□□□□ -0.83
DDX55-208ENST00000541259 ANKK1Q8NFD2 765 aa9.86□□□□□ -0.83
DDX55-208ENST00000541259 SPPL2BQ8TCT7 592 aa9.86□□□□□ -0.83
DDX55-208ENST00000541259 SMARCD1Q96GM5 515 aa9.86□□□□□ -0.83
DDX55-208ENST00000541259 FUBP3Q96I24 572 aaKnown RBP eCLIP9.86□□□□□ -0.83
DDX55-208ENST00000541259 CPXM1Q96SM3 734 aa9.86□□□□□ -0.83
DDX55-208ENST00000541259 EIF3CQ99613 913 aaKnown RBP9.86□□□□□ -0.83
DDX55-208ENST00000541259 SEPT5Q99719 369 aaPredicted RBP9.86□□□□□ -0.83
DDX55-208ENST00000541259 EMILIN2Q9BXX0 1053 aa9.86□□□□□ -0.83
DDX55-208ENST00000541259 LMAN2LQ9H0V9 348 aa9.86□□□□□ -0.83
DDX55-208ENST00000541259 ISCUQ9H1K1 167 aa9.86□□□□□ -0.83
DDX55-208ENST00000541259 PRDM12Q9H4Q4 367 aa9.86□□□□□ -0.83
DDX55-208ENST00000541259 CYP4F11Q9HBI6 524 aa9.86□□□□□ -0.83
DDX55-208ENST00000541259 CSNK1G1Q9HCP0 422 aa9.86□□□□□ -0.83
DDX55-208ENST00000541259 ATP8B3O60423 1300 aa9.85□□□□□ -0.83
DDX55-208ENST00000541259 SZT2Q5T011 3432 aa9.85□□□□□ -0.83
DDX55-208ENST00000541259 XPO1O14980 1071 aaKnown RBP9.85□□□□□ -0.83
DDX55-208ENST00000541259 ERBB2P04626 1255 aa9.85□□□□□ -0.83
DDX55-208ENST00000541259 ADH1AP07327 375 aa9.85□□□□□ -0.83
DDX55-208ENST00000541259 SETSIPP0DME0 302 aa9.85□□□□□ -0.83
DDX55-208ENST00000541259 GZMAP12544 262 aa9.85□□□□□ -0.83
DDX55-208ENST00000541259 LCP1P13796 627 aa9.85□□□□□ -0.83
DDX55-208ENST00000541259 ATF6P18850 670 aa9.85□□□□□ -0.83
DDX55-208ENST00000541259 GTF2F1P35269 517 aaKnown RBP eCLIP9.85□□□□□ -0.83
DDX55-208ENST00000541259 MAGEA1P43355 309 aa9.85□□□□□ -0.83
DDX55-208ENST00000541259 MAGEA11P43364 429 aa9.85□□□□□ -0.83
DDX55-208ENST00000541259 NSFP46459 744 aaKnown RBP9.85□□□□□ -0.83
DDX55-208ENST00000541259 PLA2G4AP47712 749 aa9.85□□□□□ -0.83
DDX55-208ENST00000541259 NRIP1P48552 1158 aa9.85□□□□□ -0.83
DDX55-208ENST00000541259 CLCN4P51793 760 aa9.85□□□□□ -0.83
DDX55-208ENST00000541259 GALCP54803 685 aa9.85□□□□□ -0.83
DDX55-208ENST00000541259 RBM10P98175 930 aaKnown RBP9.85□□□□□ -0.83
DDX55-208ENST00000541259 SMARCB1Q12824 385 aa9.85□□□□□ -0.83
DDX55-208ENST00000541259 PTP4A2Q12974 167 aa9.85□□□□□ -0.83
DDX55-208ENST00000541259 PDCLQ13371 301 aa9.85□□□□□ -0.83
DDX55-208ENST00000541259 CYP4A22Q5TCH4 519 aa9.85□□□□□ -0.83
DDX55-208ENST00000541259 PDE12Q6L8Q7 609 aaKnown RBP9.85□□□□□ -0.83
DDX55-208ENST00000541259 VSTM1Q6UX27 236 aa9.85□□□□□ -0.83
DDX55-208ENST00000541259 MMS22LQ6ZRQ5 1243 aa9.85□□□□□ -0.83
DDX55-208ENST00000541259 ERICH1Q86X53 443 aa9.85□□□□□ -0.83
DDX55-208ENST00000541259 PHF13Q86YI8 300 aaPredicted RBP9.85□□□□□ -0.83
DDX55-208ENST00000541259 TCEAL8Q8IYN2 117 aa9.85□□□□□ -0.83
DDX55-208ENST00000541259 MCOLN2Q8IZK6 566 aa9.85□□□□□ -0.83
DDX55-208ENST00000541259 KREMEN2Q8NCW0 462 aa9.85□□□□□ -0.83
DDX55-208ENST00000541259 GIPC2Q8TF65 315 aa9.85□□□□□ -0.83
DDX55-208ENST00000541259 C2orf15Q8WU43 125 aaKnown RBP9.85□□□□□ -0.83
DDX55-208ENST00000541259 SLC22A17Q8WUG5 538 aa9.85□□□□□ -0.83
DDX55-208ENST00000541259 NDRG1Q92597 394 aaKnown RBP9.85□□□□□ -0.83
DDX55-208ENST00000541259 MRPL38Q96DV4 380 aaKnown RBP9.85□□□□□ -0.83
DDX55-208ENST00000541259 PPP1R13BQ96KQ4 1090 aa9.85□□□□□ -0.83
DDX55-208ENST00000541259 FAM161BQ96MY7 647 aa9.85□□□□□ -0.83
DDX55-208ENST00000541259 C11orf70Q9BRQ4 267 aa9.85□□□□□ -0.83
DDX55-208ENST00000541259 ABCB6Q9NP58 842 aa9.85□□□□□ -0.83
DDX55-208ENST00000541259 DMAP1Q9NPF5 467 aaPredicted RBP9.85□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms