RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 MYO18AQ92614 2054 aaKnown RBP14.46□□□□□ -0.09
SS18-204ENST00000539244 TNRC6BQ9UPQ9 1833 aaKnown RBP14.46□□□□□ -0.09
SS18-204ENST00000539244 CDX4O14627 284 aaPredicted RBP14.46□□□□□ -0.09
SS18-204ENST00000539244 STAU1O95793 577 aaKnown RBP14.46□□□□□ -0.09
SS18-204ENST00000539244 CST3P01034 146 aaPredicted RBP14.46□□□□□ -0.09
SS18-204ENST00000539244 PROS1P07225 676 aa14.46□□□□□ -0.09
SS18-204ENST00000539244 HNRNPLP14866 589 aaKnown RBP eCLIP14.46□□□□□ -0.093e-8■■■■□ 24
SS18-204ENST00000539244 CSRP1P21291 193 aaKnown RBP14.46□□□□□ -0.09
SS18-204ENST00000539244 GNL1P36915 607 aaPredicted RBP14.46□□□□□ -0.09
SS18-204ENST00000539244 NASPP49321 788 aaPredicted RBP14.46□□□□□ -0.09
SS18-204ENST00000539244 SEC13P55735 322 aa14.46□□□□□ -0.09
SS18-204ENST00000539244 TAF10Q12962 218 aa14.46□□□□□ -0.09
SS18-204ENST00000539244 E2F4Q16254 413 aa14.46□□□□□ -0.09
SS18-204ENST00000539244 SNRNP35Q16560 246 aaKnown RBP14.46□□□□□ -0.09
SS18-204ENST00000539244 MDH1BQ5I0G3 518 aa14.46□□□□□ -0.09
SS18-204ENST00000539244 TDRD10Q5VZ19 366 aaKnown RBP14.46□□□□□ -0.09
SS18-204ENST00000539244 CNNM4Q6P4Q7 775 aa14.46□□□□□ -0.09
SS18-204ENST00000539244 RHBDF2Q6PJF5 856 aa14.46□□□□□ -0.09
SS18-204ENST00000539244 TMEM92Q6UXU6 159 aa14.46□□□□□ -0.09
SS18-204ENST00000539244 CYP2U1Q7Z449 544 aa14.46□□□□□ -0.09
SS18-204ENST00000539244 DDX42Q86XP3 938 aaKnown RBP eCLIP14.46□□□□□ -0.09
SS18-204ENST00000539244 IL17RCQ8NAC3 791 aa14.46□□□□□ -0.09
SS18-204ENST00000539244 ZNF507Q8TCN5 953 aa14.46□□□□□ -0.09
SS18-204ENST00000539244 OVCA2Q8WZ82 227 aa14.46□□□□□ -0.09
SS18-204ENST00000539244 SLITRK1Q96PX8 696 aa14.46□□□□□ -0.09
SS18-204ENST00000539244 PNKPQ96T60 521 aa14.46□□□□□ -0.09
SS18-204ENST00000539244 DUSP9Q99956 384 aaKnown RBP14.46□□□□□ -0.09
SS18-204ENST00000539244 TRIM9Q9C026 710 aa14.46□□□□□ -0.09
SS18-204ENST00000539244 SNX25Q9H3E2 840 aa14.46□□□□□ -0.09
SS18-204ENST00000539244 CUEDC2Q9H467 287 aa14.46□□□□□ -0.09
SS18-204ENST00000539244 TMEM9BQ9NQ34 198 aa14.46□□□□□ -0.09
SS18-204ENST00000539244 INVSQ9Y283 1065 aa14.46□□□□□ -0.09
SS18-204ENST00000539244 CHD6Q8TD26 2715 aa14.46□□□□□ -0.09
SS18-204ENST00000539244 CEP295Q9C0D2 2601 aa14.45□□□□□ -0.1
SS18-204ENST00000539244 ASCC3Q8N3C0 2202 aaKnown RBP14.45□□□□□ -0.1
SS18-204ENST00000539244 GIPC1O14908 333 aa14.45□□□□□ -0.1
SS18-204ENST00000539244 TGFB1I1O43294 461 aa14.45□□□□□ -0.1
SS18-204ENST00000539244 ALDH1A2O94788 518 aa14.45□□□□□ -0.1
SS18-204ENST00000539244 KAT7O95251 611 aa14.45□□□□□ -0.1
SS18-204ENST00000539244 ADH1CP00326 375 aa14.45□□□□□ -0.1
SS18-204ENST00000539244 CEACAM1P13688 526 aa14.45□□□□□ -0.1
SS18-204ENST00000539244 PTPN1P18031 435 aaKnown RBP14.45□□□□□ -0.1
SS18-204ENST00000539244 P2RY2P41231 377 aa14.45□□□□□ -0.1
SS18-204ENST00000539244 KIR2DL1P43626 348 aaPredicted RBP14.45□□□□□ -0.1
SS18-204ENST00000539244 CACNA2D1P54289 1103 aa14.45□□□□□ -0.1
SS18-204ENST00000539244 SNRPFP62306 86 aaKnown RBP14.45□□□□□ -0.1
SS18-204ENST00000539244 MESP2Q0VG99 397 aa14.45□□□□□ -0.1
SS18-204ENST00000539244 PSMD6Q15008 389 aa14.45□□□□□ -0.1
SS18-204ENST00000539244 SPDYCQ5MJ68 293 aa14.45□□□□□ -0.1
SS18-204ENST00000539244 SH3PXD2AQ5TCZ1 1133 aa14.45□□□□□ -0.1
SS18-204ENST00000539244 HS2ST1Q7LGA3 356 aa14.45□□□□□ -0.1
SS18-204ENST00000539244 C12orf40Q86WS4 652 aa14.45□□□□□ -0.1
SS18-204ENST00000539244 PHTF2Q8N3S3 785 aa14.45□□□□□ -0.1
SS18-204ENST00000539244 CCDC33Q8N5R6 958 aa14.45□□□□□ -0.1
SS18-204ENST00000539244 PDILTQ8N807 584 aa14.45□□□□□ -0.1
SS18-204ENST00000539244 TXNDC5Q8NBS9 432 aaKnown RBP14.45□□□□□ -0.1
SS18-204ENST00000539244 OR6B3Q8NGW1 331 aa14.45□□□□□ -0.1
SS18-204ENST00000539244 HPS3Q969F9 1004 aa14.45□□□□□ -0.1
SS18-204ENST00000539244 OTUB2Q96DC9 234 aa14.45□□□□□ -0.1
SS18-204ENST00000539244 FNBP1Q96RU3 617 aa14.45□□□□□ -0.1
SS18-204ENST00000539244 CGRRF1Q99675 332 aa14.45□□□□□ -0.1
SS18-204ENST00000539244 ZSCAN16Q9H4T2 348 aaPredicted RBP14.45□□□□□ -0.1
SS18-204ENST00000539244 AGPAT3Q9NRZ7 376 aa14.45□□□□□ -0.1
SS18-204ENST00000539244 SMPD4Q9NXE4 827 aa14.45□□□□□ -0.1
SS18-204ENST00000539244 TBC1D14Q9P2M4 693 aa14.45□□□□□ -0.1
SS18-204ENST00000539244 MTMR6Q9Y217 621 aa14.45□□□□□ -0.1
SS18-204ENST00000539244 PI4KAP42356 2102 aa14.45□□□□□ -0.1
SS18-204ENST00000539244 ASPMQ8IZT6 3477 aa14.45□□□□□ -0.1
SS18-204ENST00000539244 UBE4BO95155 1302 aa14.44□□□□□ -0.1
SS18-204ENST00000539244 E2F8A0AVK6 867 aa14.44□□□□□ -0.1
SS18-204ENST00000539244 PALM2-AKAP2B1ALY0 433 aaPredicted RBP14.44□□□□□ -0.1
SS18-204ENST00000539244 PATE3B3GLJ2 98 aa14.44□□□□□ -0.1
SS18-204ENST00000539244 SGK1O00141 431 aa14.44□□□□□ -0.1
SS18-204ENST00000539244 TNFRSF10BO14763 440 aa14.44□□□□□ -0.1
SS18-204ENST00000539244 RTN3O95197 1032 aaPredicted RBP14.44□□□□□ -0.1
SS18-204ENST00000539244 APODP05090 189 aa14.44□□□□□ -0.1
SS18-204ENST00000539244 DLATP10515 647 aaKnown RBP14.44□□□□□ -0.1
SS18-204ENST00000539244 TNNI1P19237 187 aa14.44□□□□□ -0.1
SS18-204ENST00000539244 GRIA2P42262 883 aa14.44□□□□□ -0.1
SS18-204ENST00000539244 TNFRSF4P43489 277 aa14.44□□□□□ -0.1
SS18-204ENST00000539244 SLC6A11P48066 632 aa14.44□□□□□ -0.1
SS18-204ENST00000539244 IRX4P78413 519 aa14.44□□□□□ -0.1
SS18-204ENST00000539244 CYP24A1Q07973 514 aa14.44□□□□□ -0.1
SS18-204ENST00000539244 EHHADHQ08426 723 aa14.44□□□□□ -0.1
SS18-204ENST00000539244 ZNF252P-AS1Q0IIN9 211 aa14.44□□□□□ -0.1
SS18-204ENST00000539244 WDR72Q3MJ13 1102 aa14.44□□□□□ -0.1
SS18-204ENST00000539244 EOGTQ5NDL2 527 aa14.44□□□□□ -0.1
SS18-204ENST00000539244 SNX30Q5VWJ9 437 aa14.44□□□□□ -0.1
SS18-204ENST00000539244 SFTPA1Q8IWL2 248 aa14.44□□□□□ -0.1
SS18-204ENST00000539244 NUP93Q8N1F7 819 aa14.44□□□□□ -0.1
SS18-204ENST00000539244 ALLCQ8N6M5 410 aa14.44□□□□□ -0.1
SS18-204ENST00000539244 LINC00301Q8NCQ3 95 aa14.44□□□□□ -0.1
SS18-204ENST00000539244 B3GALNT2Q8NCR0 500 aa14.44□□□□□ -0.1
SS18-204ENST00000539244 PDZD8Q8NEN9 1154 aa14.44□□□□□ -0.1
SS18-204ENST00000539244 WHAMMQ8TF30 809 aa14.44□□□□□ -0.1
SS18-204ENST00000539244 INTS4Q96HW7 963 aaKnown RBP14.44□□□□□ -0.1
SS18-204ENST00000539244 ZFRQ96KR1 1074 aaKnown RBP14.44□□□□□ -0.1
SS18-204ENST00000539244 SPACA7Q96KW9 195 aa14.44□□□□□ -0.1
SS18-204ENST00000539244 B3GNT5Q9BYG0 378 aa14.44□□□□□ -0.1
SS18-204ENST00000539244 ZNF518BQ9C0D4 1074 aa14.44□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms