RNA–Protein interactions for RNA: ENST00000530790.5

VPS28-211, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 561 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-211ENST00000530790 ERCC4Q92889 916 aaPredicted RBP14.13□□□□□ -0.15
VPS28-211ENST00000530790 ATP2A3Q93084 1043 aa14.13□□□□□ -0.15
VPS28-211ENST00000530790 EEF2KMTQ96G04 330 aa14.13□□□□□ -0.15
VPS28-211ENST00000530790 DNAI2Q9GZS0 605 aa14.13□□□□□ -0.15
VPS28-211ENST00000530790 CYP3A43Q9HB55 503 aa14.13□□□□□ -0.15
VPS28-211ENST00000530790 APOBEC3GQ9HC16 384 aaKnown RBP14.13□□□□□ -0.15
VPS28-211ENST00000530790 RBM12Q9NTZ6 932 aaKnown RBP14.13□□□□□ -0.15
VPS28-211ENST00000530790 FAM49BQ9NUQ9 324 aa14.13□□□□□ -0.15
VPS28-211ENST00000530790 ZSCAN32Q9NX65 697 aa14.13□□□□□ -0.15
VPS28-211ENST00000530790 DUS2Q9NX74 493 aaKnown RBP14.13□□□□□ -0.15
VPS28-211ENST00000530790 WNT6Q9Y6F9 365 aa14.13□□□□□ -0.15
VPS28-211ENST00000530790 CD58P19256 250 aa14.12□□□□□ -0.15
VPS28-211ENST00000530790 YWHAQP27348 245 aa14.12□□□□□ -0.15
VPS28-211ENST00000530790 LRRC63Q05C16 580 aa14.12□□□□□ -0.15
VPS28-211ENST00000530790 GRSF1Q12849 480 aaKnown RBP eCLIP14.12□□□□□ -0.15
VPS28-211ENST00000530790 STIM1Q13586 685 aa14.12□□□□□ -0.15
VPS28-211ENST00000530790 CCINQ13939 588 aa14.12□□□□□ -0.15
VPS28-211ENST00000530790 DCAF17Q5H9S7 520 aaPredicted RBP14.12□□□□□ -0.15
VPS28-211ENST00000530790 MAMSTRQ6ZN01 415 aa14.12□□□□□ -0.15
VPS28-211ENST00000530790 Q6ZS52 159 aa14.12□□□□□ -0.15
VPS28-211ENST00000530790 ADSSL1Q8N142 457 aa14.12□□□□□ -0.15
VPS28-211ENST00000530790 SPEM1Q8N4L4 309 aa14.12□□□□□ -0.15
VPS28-211ENST00000530790 SLC2A14Q8TDB8 520 aa14.12□□□□□ -0.15
VPS28-211ENST00000530790 OVCA2Q8WZ82 227 aa14.12□□□□□ -0.15
VPS28-211ENST00000530790 EXOC4Q96A65 974 aa14.12□□□□□ -0.15
VPS28-211ENST00000530790 KCNK16Q96T55 309 aa14.12□□□□□ -0.15
VPS28-211ENST00000530790 FAM126AQ9BYI3 521 aaPredicted RBP14.12□□□□□ -0.15
VPS28-211ENST00000530790 CIZ1Q9ULV3 898 aaPredicted RBP14.12□□□□□ -0.15
VPS28-211ENST00000530790 GREB1Q4ZG55 1949 aa14.11□□□□□ -0.15
VPS28-211ENST00000530790 F5P12259 2224 aa14.11□□□□□ -0.15
VPS28-211ENST00000530790 OTOL1A6NHN0 477 aaPredicted RBP14.11□□□□□ -0.15
VPS28-211ENST00000530790 PSMA7O14818 248 aa14.11□□□□□ -0.15
VPS28-211ENST00000530790 OLFM2O95897 454 aa14.11□□□□□ -0.15
VPS28-211ENST00000530790 OAS1P00973 400 aaKnown RBP14.11□□□□□ -0.15
VPS28-211ENST00000530790 FAM200BP0CF97 657 aa14.11□□□□□ -0.15
VPS28-211ENST00000530790 ADORA2BP29275 332 aa14.11□□□□□ -0.15
VPS28-211ENST00000530790 CXCL12P48061 93 aa14.11□□□□□ -0.15
VPS28-211ENST00000530790 NRLP54845 237 aa14.11□□□□□ -0.15
VPS28-211ENST00000530790 SLC7A9P82251 487 aa14.11□□□□□ -0.15
VPS28-211ENST00000530790 FKBP3Q00688 224 aaKnown RBP14.11□□□□□ -0.15
VPS28-211ENST00000530790 SATB1Q01826 763 aa14.11□□□□□ -0.15
VPS28-211ENST00000530790 WDR44Q5JSH3 913 aa14.11□□□□□ -0.15
VPS28-211ENST00000530790 TCERG1LQ5VWI1 586 aa14.11□□□□□ -0.15
VPS28-211ENST00000530790 PAQR9Q6ZVX9 377 aa14.11□□□□□ -0.15
VPS28-211ENST00000530790 DDX42Q86XP3 938 aaKnown RBP eCLIP14.11□□□□□ -0.15
VPS28-211ENST00000530790 CRYBG2Q8N1P7 616 aa14.11□□□□□ -0.15
VPS28-211ENST00000530790 SYNPOQ8N3V7 929 aa14.11□□□□□ -0.15
VPS28-211ENST00000530790 ZBTB44Q8NCP5 570 aa14.11□□□□□ -0.15
VPS28-211ENST00000530790 FBXL13Q8NEE6 735 aa14.11□□□□□ -0.15
VPS28-211ENST00000530790 HINFPQ9BQA5 517 aa14.11□□□□□ -0.15
VPS28-211ENST00000530790 NT5C1AQ9BXI3 368 aa14.11□□□□□ -0.15
VPS28-211ENST00000530790 CPQQ9Y646 472 aa14.11□□□□□ -0.15
VPS28-211ENST00000530790 HELZP42694 1942 aaKnown RBP14.1□□□□□ -0.15
VPS28-211ENST00000530790 TRIM49BA6NDI0 452 aa14.1□□□□□ -0.15
VPS28-211ENST00000530790 LEFTY2O00292 366 aa14.1□□□□□ -0.15
VPS28-211ENST00000530790 TNFRSF10BO14763 440 aa14.1□□□□□ -0.15
VPS28-211ENST00000530790 CILPO75339 1184 aa14.1□□□□□ -0.15
VPS28-211ENST00000530790 NFATC1O95644 943 aa14.1□□□□□ -0.15
VPS28-211ENST00000530790 TDGF1P13385 188 aa14.1□□□□□ -0.15
VPS28-211ENST00000530790 PPP1R2P41236 205 aa14.1□□□□□ -0.15
VPS28-211ENST00000530790 PMS1P54277 932 aaKnown RBP14.1□□□□□ -0.15
VPS28-211ENST00000530790 MAP3K7CLP57077 242 aa14.1□□□□□ -0.15
VPS28-211ENST00000530790 MCCD1P59942 119 aaPredicted RBP14.1□□□□□ -0.15
VPS28-211ENST00000530790 GAS6Q14393 721 aa14.1□□□□□ -0.15
VPS28-211ENST00000530790 EML3Q32P44 896 aa14.1□□□□□ -0.15
VPS28-211ENST00000530790 TMEM196Q5HYL7 178 aa14.1□□□□□ -0.15
VPS28-211ENST00000530790 ZC3H3Q8IXZ2 948 aaKnown RBP14.1□□□□□ -0.15
VPS28-211ENST00000530790 ELOA2Q8IYF1 753 aaPredicted RBP14.1□□□□□ -0.15
VPS28-211ENST00000530790 TTC39CQ8N584 583 aa14.1□□□□□ -0.15
VPS28-211ENST00000530790 C12orf29Q8N999 325 aa14.1□□□□□ -0.15
VPS28-211ENST00000530790 SCAMP5Q8TAC9 235 aa14.1□□□□□ -0.15
VPS28-211ENST00000530790 NELL1Q92832 810 aa14.1□□□□□ -0.15
VPS28-211ENST00000530790 FAXDC2Q96IV6 333 aa14.1□□□□□ -0.15
VPS28-211ENST00000530790 TWNKQ96RR1 684 aa14.1□□□□□ -0.15
VPS28-211ENST00000530790 SMOQ99835 787 aa14.1□□□□□ -0.15
VPS28-211ENST00000530790 FBXO44Q9H4M3 255 aa14.1□□□□□ -0.15
VPS28-211ENST00000530790 ECT2Q9H8V3 914 aa14.1□□□□□ -0.15
VPS28-211ENST00000530790 CSNK1G1Q9HCP0 422 aa14.1□□□□□ -0.15
VPS28-211ENST00000530790 COMMD8Q9NX08 183 aa14.1□□□□□ -0.15
VPS28-211ENST00000530790 RAB20Q9NX57 234 aa14.1□□□□□ -0.15
VPS28-211ENST00000530790 SMPD4Q9NXE4 827 aa14.1□□□□□ -0.15
VPS28-211ENST00000530790 ZNF638Q14966 1978 aaKnown RBP14.09□□□□□ -0.15
VPS28-211ENST00000530790 TRDMT1O14717 391 aaKnown RBP14.09□□□□□ -0.15
VPS28-211ENST00000530790 PAPSS2O95340 614 aaPredicted RBP14.09□□□□□ -0.15
VPS28-211ENST00000530790 MBL2P11226 248 aaPredicted RBP14.09□□□□□ -0.15
VPS28-211ENST00000530790 GJA4P35212 333 aa14.09□□□□□ -0.15
VPS28-211ENST00000530790 TUBP50607 506 aa14.09□□□□□ -0.15
VPS28-211ENST00000530790 NR1H3Q13133 447 aa14.09□□□□□ -0.15
VPS28-211ENST00000530790 ANKRD40Q6AI12 368 aa14.09□□□□□ -0.15
VPS28-211ENST00000530790 FSTL4Q6MZW2 842 aa14.09□□□□□ -0.15
VPS28-211ENST00000530790 KIAA1958Q8N8K9 716 aa14.09□□□□□ -0.15
VPS28-211ENST00000530790 ZMIZ2Q8NF64 920 aa14.09□□□□□ -0.15
VPS28-211ENST00000530790 SEMA4DQ92854 862 aa14.09□□□□□ -0.15
VPS28-211ENST00000530790 JAKMIP2Q96AA8 810 aa14.09□□□□□ -0.15
VPS28-211ENST00000530790 CHFRQ96EP1 664 aa14.09□□□□□ -0.15
VPS28-211ENST00000530790 HNRNPABQ99729 332 aaKnown RBP14.09□□□□□ -0.15
VPS28-211ENST00000530790 P2RY13Q9BPV8 354 aa14.09□□□□□ -0.15
VPS28-211ENST00000530790 NACA2Q9H009 215 aa14.09□□□□□ -0.15
VPS28-211ENST00000530790 RNF38Q9H0F5 515 aa14.09□□□□□ -0.15
VPS28-211ENST00000530790 GMIPQ9P107 970 aa14.09□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms