RNA–Protein interactions for RNA: ENST00000526734.5

VPS28-206, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 570 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-206ENST00000526734 IL37Q9NZH6 218 aa21.86■■□□□ 1.09
VPS28-206ENST00000526734 TICRRQ7Z2Z1 1910 aa21.86■■□□□ 1.09
VPS28-206ENST00000526734 KIF26AQ9ULI4 1882 aaPredicted RBP21.86■■□□□ 1.09
VPS28-206ENST00000526734 C2orf78A6NCI8 922 aa21.85■■□□□ 1.09
VPS28-206ENST00000526734 TNFRSF10BO14763 440 aa21.85■■□□□ 1.09
VPS28-206ENST00000526734 PMM2O15305 246 aa21.85■■□□□ 1.09
VPS28-206ENST00000526734 GNA14O95837 355 aa21.85■■□□□ 1.09
VPS28-206ENST00000526734 OLFM2O95897 454 aa21.85■■□□□ 1.09
VPS28-206ENST00000526734 CCDC130P13994 396 aa21.85■■□□□ 1.09
VPS28-206ENST00000526734 CD44P16070 742 aaKnown RBP21.85■■□□□ 1.09
VPS28-206ENST00000526734 SLC5A3P53794 718 aa21.85■■□□□ 1.09
VPS28-206ENST00000526734 YWHAEP62258 255 aaKnown RBP21.85■■□□□ 1.09
VPS28-206ENST00000526734 SLC7A9P82251 487 aa21.85■■□□□ 1.09
VPS28-206ENST00000526734 FZD5Q13467 585 aa21.85■■□□□ 1.09
VPS28-206ENST00000526734 RUNX3Q13761 415 aa21.85■■□□□ 1.09
VPS28-206ENST00000526734 DGKKQ5KSL6 1271 aa21.85■■□□□ 1.09
VPS28-206ENST00000526734 ISM2Q6H9L7 571 aa21.85■■□□□ 1.09
VPS28-206ENST00000526734 TTI2Q6NXR4 508 aa21.85■■□□□ 1.09
VPS28-206ENST00000526734 DDX42Q86XP3 938 aaKnown RBP eCLIP21.85■■□□□ 1.09
VPS28-206ENST00000526734 NELFBQ8WX92 580 aa21.85■■□□□ 1.09
VPS28-206ENST00000526734 SEMA4DQ92854 862 aa21.85■■□□□ 1.09
VPS28-206ENST00000526734 FBXO32Q969P5 355 aa21.85■■□□□ 1.09
VPS28-206ENST00000526734 FBXO44Q9H4M3 255 aa21.85■■□□□ 1.09
VPS28-206ENST00000526734 FAM49BQ9NUQ9 324 aa21.85■■□□□ 1.09
VPS28-206ENST00000526734 GTSE1Q9NYZ3 720 aa21.85■■□□□ 1.09
VPS28-206ENST00000526734 F5P12259 2224 aa21.84■■□□□ 1.09
VPS28-206ENST00000526734 FAM92AA1XBS5 289 aa21.84■■□□□ 1.09
VPS28-206ENST00000526734 PPP1R3GB7ZBB8 358 aa21.84■■□□□ 1.09
VPS28-206ENST00000526734 OAS1P00973 400 aaKnown RBP21.84■■□□□ 1.09
VPS28-206ENST00000526734 CD58P19256 250 aa21.84■■□□□ 1.09
VPS28-206ENST00000526734 BMP6P22004 513 aa21.84■■□□□ 1.09
VPS28-206ENST00000526734 IFNAR2P48551 515 aa21.84■■□□□ 1.09
VPS28-206ENST00000526734 TUBP50607 506 aa21.84■■□□□ 1.09
VPS28-206ENST00000526734 PAK1Q13153 545 aa21.84■■□□□ 1.09
VPS28-206ENST00000526734 PPP2R5DQ14738 602 aa21.84■■□□□ 1.09
VPS28-206ENST00000526734 CCDC40Q4G0X9 1142 aa21.84■■□□□ 1.09
VPS28-206ENST00000526734 CBWD6Q4V339 395 aa21.84■■□□□ 1.09
VPS28-206ENST00000526734 CBWD3Q5JTY5 395 aa21.84■■□□□ 1.09
VPS28-206ENST00000526734 CBWD5Q5RIA9 395 aa21.84■■□□□ 1.09
VPS28-206ENST00000526734 SNX30Q5VWJ9 437 aa21.84■■□□□ 1.09
VPS28-206ENST00000526734 KLHL10Q6JEL2 608 aa21.84■■□□□ 1.09
VPS28-206ENST00000526734 CPA6Q8N4T0 437 aa21.84■■□□□ 1.09
VPS28-206ENST00000526734 SH3RF2Q8TEC5 729 aa21.84■■□□□ 1.09
VPS28-206ENST00000526734 OSCP1Q8WVF1 389 aa21.84■■□□□ 1.09
VPS28-206ENST00000526734 ATP2A3Q93084 1043 aa21.84■■□□□ 1.09
VPS28-206ENST00000526734 CYFIP2Q96F07 1278 aa21.84■■□□□ 1.09
VPS28-206ENST00000526734 SLC22A12Q96S37 553 aa21.84■■□□□ 1.09
VPS28-206ENST00000526734 CYP2S1Q96SQ9 504 aa21.84■■□□□ 1.09
VPS28-206ENST00000526734 KCNK16Q96T55 309 aa21.84■■□□□ 1.09
VPS28-206ENST00000526734 SMOQ99835 787 aa21.84■■□□□ 1.09
VPS28-206ENST00000526734 COL4A3Q01955 1670 aa21.84■■□□□ 1.09
VPS28-206ENST00000526734 GREB1Q4ZG55 1949 aa21.84■■□□□ 1.09
VPS28-206ENST00000526734 P4HA2O15460 535 aa21.83■■□□□ 1.09
VPS28-206ENST00000526734 FGFR1OPO95684 399 aaKnown RBP21.83■■□□□ 1.09
VPS28-206ENST00000526734 SP9P0CG40 484 aa21.83■■□□□ 1.09
VPS28-206ENST00000526734 TNK2Q07912 1038 aa21.83■■□□□ 1.09
VPS28-206ENST00000526734 CETN1Q12798 172 aa21.83■■□□□ 1.09
VPS28-206ENST00000526734 ORC1Q13415 861 aa21.83■■□□□ 1.09
VPS28-206ENST00000526734 SYNPOQ8N3V7 929 aa21.83■■□□□ 1.09
VPS28-206ENST00000526734 WHAMMQ8TF30 809 aa21.83■■□□□ 1.09
VPS28-206ENST00000526734 TWNKQ96RR1 684 aa21.83■■□□□ 1.09
VPS28-206ENST00000526734 PHOX2BQ99453 314 aa21.83■■□□□ 1.09
VPS28-206ENST00000526734 DUSP9Q99956 384 aaKnown RBP21.83■■□□□ 1.09
VPS28-206ENST00000526734 LMAN1LQ9HAT1 526 aa21.83■■□□□ 1.09
VPS28-206ENST00000526734 HPS4Q9NQG7 708 aa21.83■■□□□ 1.09
VPS28-206ENST00000526734 UTP3Q9NQZ2 479 aaKnown RBP eCLIP21.83■■□□□ 1.091e-6■■■■■ 30.7
VPS28-206ENST00000526734 CISHQ9NSE2 258 aa21.83■■□□□ 1.09
VPS28-206ENST00000526734 DUS2Q9NX74 493 aaKnown RBP21.83■■□□□ 1.09
VPS28-206ENST00000526734 KIAA1468Q9P260 1216 aa21.83■■□□□ 1.09
VPS28-206ENST00000526734 CTNND2Q9UQB3 1225 aa21.83■■□□□ 1.09
VPS28-206ENST00000526734 WDFY4Q6ZS81 3184 aa21.83■■□□□ 1.09
VPS28-206ENST00000526734 BIN1O00499 593 aa21.82■■□□□ 1.08
VPS28-206ENST00000526734 CHRNB1P11230 501 aa21.82■■□□□ 1.08
VPS28-206ENST00000526734 TBXAS1P24557 533 aaPredicted RBP21.82■■□□□ 1.08
VPS28-206ENST00000526734 SOX9P48436 509 aa21.82■■□□□ 1.08
VPS28-206ENST00000526734 IFRD2Q12894 506 aaPredicted RBP21.82■■□□□ 1.08
VPS28-206ENST00000526734 NR1H3Q13133 447 aa21.82■■□□□ 1.08
VPS28-206ENST00000526734 C12orf29Q8N999 325 aa21.82■■□□□ 1.08
VPS28-206ENST00000526734 ZMIZ2Q8NF64 920 aa21.82■■□□□ 1.08
VPS28-206ENST00000526734 NKD2Q969F2 451 aaPredicted RBP21.82■■□□□ 1.08
VPS28-206ENST00000526734 FAM126AQ9BYI3 521 aaPredicted RBP21.82■■□□□ 1.08
VPS28-206ENST00000526734 PRMT8Q9NR22 394 aaPredicted RBP21.82■■□□□ 1.08
VPS28-206ENST00000526734 SLC9A3R1O14745 358 aaPredicted RBP21.81■■□□□ 1.08
VPS28-206ENST00000526734 ABL1P00519 1130 aa21.81■■□□□ 1.08
VPS28-206ENST00000526734 ZDHHC11BP0C7U3 371 aa21.81■■□□□ 1.08
VPS28-206ENST00000526734 ADORA2BP29275 332 aa21.81■■□□□ 1.08
VPS28-206ENST00000526734 FMO5P49326 533 aa21.81■■□□□ 1.08
VPS28-206ENST00000526734 CCR3P51677 355 aa21.81■■□□□ 1.08
VPS28-206ENST00000526734 MARSP56192 900 aaKnown RBP21.81■■□□□ 1.08
VPS28-206ENST00000526734 MAP3K7CLP57077 242 aa21.81■■□□□ 1.08
VPS28-206ENST00000526734 HECTD3Q5T447 861 aa21.81■■□□□ 1.08
VPS28-206ENST00000526734 CLEC20AQ6ZU45 233 aa21.81■■□□□ 1.08
VPS28-206ENST00000526734 RIN3Q8TB24 985 aa21.81■■□□□ 1.08
VPS28-206ENST00000526734 TMEM176AQ96HP8 235 aa21.81■■□□□ 1.08
VPS28-206ENST00000526734 EBF3Q9H4W6 596 aa21.81■■□□□ 1.08
VPS28-206ENST00000526734 LEFTY2O00292 366 aa21.8■■□□□ 1.08
VPS28-206ENST00000526734 GFRA3O60609 400 aa21.8■■□□□ 1.08
VPS28-206ENST00000526734 NFATC1O95644 943 aa21.8■■□□□ 1.08
VPS28-206ENST00000526734 MTAPQ13126 283 aa21.8■■□□□ 1.08
VPS28-206ENST00000526734 CUL2Q13617 745 aa21.8■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms