RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 SUGP1Q8IWZ8 645 aaKnown RBP13.14□□□□□ -0.31
USP53-209ENST00000514665 TEX9Q8N6V9 391 aa13.14□□□□□ -0.31
USP53-209ENST00000514665 SHCBP1Q8NEM2 672 aa13.14□□□□□ -0.31
USP53-209ENST00000514665 NKX2-3Q8TAU0 364 aa13.14□□□□□ -0.31
USP53-209ENST00000514665 PWWP2AQ96N64 755 aa13.14□□□□□ -0.31
USP53-209ENST00000514665 TMEM120AQ9BXJ8 343 aa13.14□□□□□ -0.31
USP53-209ENST00000514665 RXFP1Q9HBX9 757 aa13.14□□□□□ -0.31
USP53-209ENST00000514665 V9GYQ6 96 aa13.14□□□□□ -0.31
USP53-209ENST00000514665 O00370 1275 aa13.14□□□□□ -0.31
USP53-209ENST00000514665 ZBTB24O43167 697 aaPredicted RBP13.14□□□□□ -0.31
USP53-209ENST00000514665 JCHAINP01591 159 aa13.14□□□□□ -0.31
USP53-209ENST00000514665 ADRB2P07550 413 aa13.14□□□□□ -0.31
USP53-209ENST00000514665 SPATA31C1P0DKV0 1188 aa13.14□□□□□ -0.31
USP53-209ENST00000514665 CYP2C8P10632 490 aa13.14□□□□□ -0.31
USP53-209ENST00000514665 MAPTP10636 758 aaKnown RBP13.14□□□□□ -0.31
USP53-209ENST00000514665 INPP1P49441 399 aa13.14□□□□□ -0.31
USP53-209ENST00000514665 MRPS35P82673 323 aaKnown RBP13.14□□□□□ -0.31
USP53-209ENST00000514665 DGKDQ16760 1214 aa13.14□□□□□ -0.31
USP53-209ENST00000514665 ALG3Q92685 438 aa13.14□□□□□ -0.31
USP53-209ENST00000514665 L3MBTL3Q96JM7 780 aaPredicted RBP13.14□□□□□ -0.31
USP53-209ENST00000514665 KIAA1683Q9H0B3 1180 aa13.14□□□□□ -0.31
USP53-209ENST00000514665 ILKAPQ9H0C8 392 aaPredicted RBP13.14□□□□□ -0.31
USP53-209ENST00000514665 HSD3B7Q9H2F3 369 aa13.14□□□□□ -0.31
USP53-209ENST00000514665 CHST12Q9NRB3 414 aa13.14□□□□□ -0.31
USP53-209ENST00000514665 TADA2AO75478 443 aa13.14□□□□□ -0.31
USP53-209ENST00000514665 YY1P25490 414 aa13.14□□□□□ -0.31
USP53-209ENST00000514665 ARSHQ5FYA8 562 aa13.14□□□□□ -0.31
USP53-209ENST00000514665 FAM83AQ86UY5 434 aa13.14□□□□□ -0.31
USP53-209ENST00000514665 MAP4K3Q8IVH8 894 aa13.14□□□□□ -0.31
USP53-209ENST00000514665 ARHGAP18Q8N392 663 aa13.14□□□□□ -0.31
USP53-209ENST00000514665 WDCPQ9H6R7 721 aa13.14□□□□□ -0.31
USP53-209ENST00000514665 LATS2Q9NRM7 1088 aa13.14□□□□□ -0.31
USP53-209ENST00000514665 CDYLQ9Y232 598 aa13.14□□□□□ -0.31
USP53-209ENST00000514665 TGFB1I1O43294 461 aa13.13□□□□□ -0.31
USP53-209ENST00000514665 SUPT3HO75486 399 aa13.13□□□□□ -0.31
USP53-209ENST00000514665 CBX6O95503 412 aa13.13□□□□□ -0.31
USP53-209ENST00000514665 SERPINB5P36952 375 aa13.13□□□□□ -0.31
USP53-209ENST00000514665 FLOT2Q14254 428 aa13.13□□□□□ -0.31
USP53-209ENST00000514665 MKL1Q969V6 931 aa13.13□□□□□ -0.31
USP53-209ENST00000514665 PBXIP1Q96AQ6 731 aa13.13□□□□□ -0.31
USP53-209ENST00000514665 GCNAQ96QF7 691 aa13.13□□□□□ -0.31
USP53-209ENST00000514665 ZCWPW1Q9H0M4 648 aa13.13□□□□□ -0.31
USP53-209ENST00000514665 RNF19AQ9NV58 838 aa13.13□□□□□ -0.31
USP53-209ENST00000514665 SLC8A2Q9UPR5 921 aa13.13□□□□□ -0.31
USP53-209ENST00000514665 KBTBD13C9JR72 458 aa13.13□□□□□ -0.31
USP53-209ENST00000514665 CYP3A4P08684 503 aa13.13□□□□□ -0.31
USP53-209ENST00000514665 INSRRP14616 1297 aa13.13□□□□□ -0.31
USP53-209ENST00000514665 ETS1P14921 441 aa13.13□□□□□ -0.31
USP53-209ENST00000514665 ADRA1DP25100 572 aa13.13□□□□□ -0.31
USP53-209ENST00000514665 NDST1P52848 882 aa13.13□□□□□ -0.31
USP53-209ENST00000514665 PDK2Q15119 407 aa13.13□□□□□ -0.31
USP53-209ENST00000514665 DENND1BQ6P3S1 775 aa13.13□□□□□ -0.31
USP53-209ENST00000514665 IL31RAQ8NI17 732 aa13.13□□□□□ -0.31
USP53-209ENST00000514665 UNKQ9C0B0 810 aaKnown RBP13.13□□□□□ -0.31
USP53-209ENST00000514665 CASS4Q9NQ75 786 aa13.13□□□□□ -0.31
USP53-209ENST00000514665 TSPAN16Q9UKR8 245 aa13.13□□□□□ -0.31
USP53-209ENST00000514665 KIAA1257Q9ULG3 409 aa13.13□□□□□ -0.31
USP53-209ENST00000514665 DCCP43146 1447 aa13.13□□□□□ -0.31
USP53-209ENST00000514665 AP3B1O00203 1094 aa13.13□□□□□ -0.31
USP53-209ENST00000514665 GLRA3O75311 464 aa13.13□□□□□ -0.31
USP53-209ENST00000514665 MT-CO1P00395 513 aa13.13□□□□□ -0.31
USP53-209ENST00000514665 ITGB5P18084 799 aa13.13□□□□□ -0.31
USP53-209ENST00000514665 C16orf87Q6PH81 154 aa13.13□□□□□ -0.31
USP53-209ENST00000514665 POTEAQ6S8J7 498 aa13.13□□□□□ -0.31
USP53-209ENST00000514665 METTL7BQ6UX53 244 aa13.13□□□□□ -0.31
USP53-209ENST00000514665 CCDC60Q8IWA6 550 aaPredicted RBP13.13□□□□□ -0.31
USP53-209ENST00000514665 ZNF512Q96ME7 567 aaPredicted RBP13.13□□□□□ -0.31
USP53-209ENST00000514665 HSD17B14Q9BPX1 270 aa13.13□□□□□ -0.31
USP53-209ENST00000514665 RUBCNLQ9H714 662 aa13.13□□□□□ -0.31
USP53-209ENST00000514665 CYP4F12Q9HCS2 524 aa13.13□□□□□ -0.31
USP53-209ENST00000514665 ARMCX1Q9P291 453 aa13.13□□□□□ -0.31
USP53-209ENST00000514665 ARHGAP26Q9UNA1 814 aa13.13□□□□□ -0.31
USP53-209ENST00000514665 E9PBE3 544 aa13.12□□□□□ -0.31
USP53-209ENST00000514665 KLHL41O60662 606 aa13.12□□□□□ -0.31
USP53-209ENST00000514665 SUPT7LO94864 414 aa13.12□□□□□ -0.31
USP53-209ENST00000514665 ATP6V1G2O95670 118 aa13.12□□□□□ -0.31
USP53-209ENST00000514665 HMOX2P30519 316 aa13.12□□□□□ -0.31
USP53-209ENST00000514665 MFSD14CQ5VZR4 134 aa13.12□□□□□ -0.31
USP53-209ENST00000514665 C4orf22Q6V702 233 aa13.12□□□□□ -0.31
USP53-209ENST00000514665 SLFN11Q7Z7L1 901 aa13.12□□□□□ -0.31
USP53-209ENST00000514665 SCUBE3Q8IX30 993 aa13.12□□□□□ -0.31
USP53-209ENST00000514665 FUKQ8N0W3 1084 aa13.12□□□□□ -0.31
USP53-209ENST00000514665 ETNPPLQ8TBG4 499 aa13.12□□□□□ -0.31
USP53-209ENST00000514665 TSPAN17Q96FV3 270 aa13.12□□□□□ -0.31
USP53-209ENST00000514665 OSMRQ99650 979 aa13.12□□□□□ -0.31
USP53-209ENST00000514665 DCLRE1BQ9H816 532 aa13.12□□□□□ -0.31
USP53-209ENST00000514665 ABI2Q9NYB9 513 aaPredicted RBP13.12□□□□□ -0.31
USP53-209ENST00000514665 LMCD1Q9NZU5 365 aa13.12□□□□□ -0.31
USP53-209ENST00000514665 RIMS1Q86UR5 1692 aaKnown RBP13.12□□□□□ -0.31
USP53-209ENST00000514665 KCNK1O00180 336 aa13.12□□□□□ -0.31
USP53-209ENST00000514665 MTSS1O43312 755 aa13.12□□□□□ -0.31
USP53-209ENST00000514665 FDFT1P37268 417 aa13.12□□□□□ -0.31
USP53-209ENST00000514665 OCA2Q04671 838 aa13.12□□□□□ -0.31
USP53-209ENST00000514665 ITGB3BPQ13352 177 aaPredicted RBP13.12□□□□□ -0.31
USP53-209ENST00000514665 SPDYAQ5MJ70 313 aa13.12□□□□□ -0.31
USP53-209ENST00000514665 CHSY1Q86X52 802 aa13.12□□□□□ -0.31
USP53-209ENST00000514665 MIB1Q86YT6 1006 aa13.12□□□□□ -0.31
USP53-209ENST00000514665 SEPT5Q99719 369 aaPredicted RBP13.12□□□□□ -0.31
USP53-209ENST00000514665 A1CFQ9NQ94 594 aaKnown RBP13.12□□□□□ -0.31
USP53-209ENST00000514665 AVENQ9NQS1 362 aaPredicted RBP13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms