RNA–Protein interactions for RNA: ENST00000514307.5

NUP54-214, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-214ENST00000514307 TADA3O75528 432 aa16.79■□□□□ 0.28
NUP54-214ENST00000514307 BDNFP23560 247 aa16.79■□□□□ 0.28
NUP54-214ENST00000514307 PCK1P35558 622 aa16.79■□□□□ 0.28
NUP54-214ENST00000514307 GRIK1P39086 918 aa16.79■□□□□ 0.28
NUP54-214ENST00000514307 MAGEA11P43364 429 aa16.79■□□□□ 0.28
NUP54-214ENST00000514307 COPS2P61201 443 aa16.79■□□□□ 0.28
NUP54-214ENST00000514307 YWHAZP63104 245 aaKnown RBP16.79■□□□□ 0.28
NUP54-214ENST00000514307 MRPS5P82675 430 aaKnown RBP16.79■□□□□ 0.28
NUP54-214ENST00000514307 KRT17Q04695 432 aa16.79■□□□□ 0.28
NUP54-214ENST00000514307 PTPROQ16827 1216 aa16.79■□□□□ 0.28
NUP54-214ENST00000514307 LONRF2Q1L5Z9 754 aa16.79■□□□□ 0.28
NUP54-214ENST00000514307 SLC39A12Q504Y0 691 aa16.79■□□□□ 0.28
NUP54-214ENST00000514307 GLE1Q53GS7 698 aaKnown RBP16.79■□□□□ 0.28
NUP54-214ENST00000514307 ZFYVE27Q5T4F4 411 aa16.79■□□□□ 0.28
NUP54-214ENST00000514307 OLFML1Q6UWY5 402 aa16.79■□□□□ 0.28
NUP54-214ENST00000514307 POLNQ7Z5Q5 900 aa16.79■□□□□ 0.28
NUP54-214ENST00000514307 KATNAL2Q8IYT4 538 aa16.79■□□□□ 0.28
NUP54-214ENST00000514307 SCML4Q8N228 414 aa16.79■□□□□ 0.28
NUP54-214ENST00000514307 MMGT1Q8N4V1 131 aa16.79■□□□□ 0.28
NUP54-214ENST00000514307 GPR161Q8N6U8 529 aaKnown RBP16.79■□□□□ 0.28
NUP54-214ENST00000514307 OR10T2Q8NGX3 314 aa16.79■□□□□ 0.28
NUP54-214ENST00000514307 EXD1Q8NHP7 514 aa16.79■□□□□ 0.28
NUP54-214ENST00000514307 JOSD2Q8TAC2 188 aa16.79■□□□□ 0.28
NUP54-214ENST00000514307 TMEM169Q96HH4 297 aa16.79■□□□□ 0.28
NUP54-214ENST00000514307 MS4A14Q96JA4 679 aa16.79■□□□□ 0.28
NUP54-214ENST00000514307 MARCH5Q9NX47 278 aa16.79■□□□□ 0.28
NUP54-214ENST00000514307 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP16.79■□□□□ 0.28
NUP54-214ENST00000514307 TJP2Q9UDY2 1190 aa16.79■□□□□ 0.28
NUP54-214ENST00000514307 INSL6Q9Y581 213 aa16.79■□□□□ 0.28
NUP54-214ENST00000514307 PCDHB12Q9Y5F1 795 aa16.79■□□□□ 0.28
NUP54-214ENST00000514307 GOLGA6L10A0A0M3HER8 536 aa16.78■□□□□ 0.28
NUP54-214ENST00000514307 F8VP50 259 aa16.78■□□□□ 0.28
NUP54-214ENST00000514307 PIK3R2O00459 728 aa16.78■□□□□ 0.28
NUP54-214ENST00000514307 KRIT1O00522 736 aa16.78■□□□□ 0.28
NUP54-214ENST00000514307 DPYSL4O14531 572 aa16.78■□□□□ 0.28
NUP54-214ENST00000514307 GJB6O95452 261 aa16.78■□□□□ 0.28
NUP54-214ENST00000514307 PPM1AP35813 382 aa16.78■□□□□ 0.28
NUP54-214ENST00000514307 PTPN9P43378 593 aa16.78■□□□□ 0.28
NUP54-214ENST00000514307 MLLT1Q03111 559 aaPredicted RBP16.78■□□□□ 0.28
NUP54-214ENST00000514307 GPR17Q13304 367 aa16.78■□□□□ 0.28
NUP54-214ENST00000514307 BOLA3Q53S33 107 aa16.78■□□□□ 0.28
NUP54-214ENST00000514307 RAB41Q5JT25 222 aa16.78■□□□□ 0.28
NUP54-214ENST00000514307 FAM117BQ6P1L5 589 aa16.78■□□□□ 0.28
NUP54-214ENST00000514307 C16orf59Q7L2K0 433 aa16.78■□□□□ 0.28
NUP54-214ENST00000514307 RSRC2Q7L4I2 434 aaKnown RBP16.78■□□□□ 0.28
NUP54-214ENST00000514307 RBM41Q96IZ5 413 aaKnown RBP16.78■□□□□ 0.28
NUP54-214ENST00000514307 C8orf48Q96LL4 319 aa16.78■□□□□ 0.28
NUP54-214ENST00000514307 RNPC3Q96LT9 517 aaKnown RBP16.78■□□□□ 0.28
NUP54-214ENST00000514307 DDX23Q9BUQ8 820 aaKnown RBP16.78■□□□□ 0.28
NUP54-214ENST00000514307 HOMER3Q9NSC5 361 aa16.78■□□□□ 0.28
NUP54-214ENST00000514307 RRN3Q9NYV6 651 aa16.78■□□□□ 0.28
NUP54-214ENST00000514307 SSX2IPQ9Y2D8 614 aa16.78■□□□□ 0.28
NUP54-214ENST00000514307 BACE2Q9Y5Z0 518 aa16.78■□□□□ 0.28
NUP54-214ENST00000514307 TRIP11Q15643 1979 aa16.78■□□□□ 0.28
NUP54-214ENST00000514307 PDCD11Q14690 1871 aaKnown RBP16.78■□□□□ 0.28
NUP54-214ENST00000514307 TNRC18O15417 2968 aaPredicted RBP16.77■□□□□ 0.28
NUP54-214ENST00000514307 PDE2AO00408 941 aaPredicted RBP16.77■□□□□ 0.28
NUP54-214ENST00000514307 TRIM66O15016 1216 aa16.77■□□□□ 0.28
NUP54-214ENST00000514307 GABBR2O75899 941 aa16.77■□□□□ 0.28
NUP54-214ENST00000514307 BEST1O76090 585 aa16.77■□□□□ 0.28
NUP54-214ENST00000514307 ZBED1O96006 694 aa16.77■□□□□ 0.28
NUP54-214ENST00000514307 FGGP02679 453 aa16.77■□□□□ 0.28
NUP54-214ENST00000514307 PYGMP11217 842 aa16.77■□□□□ 0.28
NUP54-214ENST00000514307 MCM3P25205 808 aa16.77■□□□□ 0.28
NUP54-214ENST00000514307 NOS2P35228 1153 aa16.77■□□□□ 0.28
NUP54-214ENST00000514307 MATKP42679 507 aa16.77■□□□□ 0.28
NUP54-214ENST00000514307 DEFB103AP81534 67 aa16.77■□□□□ 0.28
NUP54-214ENST00000514307 ADIGQ0VDE8 80 aa16.77■□□□□ 0.28
NUP54-214ENST00000514307 TEX35Q5T0J7 233 aa16.77■□□□□ 0.28
NUP54-214ENST00000514307 GPR65Q8IYL9 337 aa16.77■□□□□ 0.28
NUP54-214ENST00000514307 C7orf61Q8IZ16 206 aa16.77■□□□□ 0.28
NUP54-214ENST00000514307 FIBCD1Q8N539 461 aa16.77■□□□□ 0.28
NUP54-214ENST00000514307 EMC1Q8N766 993 aa16.77■□□□□ 0.28
NUP54-214ENST00000514307 SPPL2BQ8TCT7 592 aa16.77■□□□□ 0.28
NUP54-214ENST00000514307 ALG3Q92685 438 aa16.77■□□□□ 0.28
NUP54-214ENST00000514307 KRT35Q92764 455 aa16.77■□□□□ 0.28
NUP54-214ENST00000514307 KHSRPQ92945 711 aaKnown RBP eCLIP16.77■□□□□ 0.287e-7■■■□□ 17.1
NUP54-214ENST00000514307 KCNK16Q96T55 309 aa16.77■□□□□ 0.28
NUP54-214ENST00000514307 COMMD8Q9NX08 183 aa16.77■□□□□ 0.28
NUP54-214ENST00000514307 SLC4A7Q9Y6M7 1214 aa16.77■□□□□ 0.28
NUP54-214ENST00000514307 CAPN9O14815 690 aa16.76■□□□□ 0.27
NUP54-214ENST00000514307 PRPSAP2O60256 369 aa16.76■□□□□ 0.27
NUP54-214ENST00000514307 TBC1D4O60343 1298 aa16.76■□□□□ 0.27
NUP54-214ENST00000514307 CPB1P15086 417 aa16.76■□□□□ 0.27
NUP54-214ENST00000514307 RPL10AP62906 217 aaKnown RBP16.76■□□□□ 0.27
NUP54-214ENST00000514307 OGDHQ02218 1023 aa16.76■□□□□ 0.27
NUP54-214ENST00000514307 ERCC6LQ2NKX8 1250 aa16.76■□□□□ 0.27
NUP54-214ENST00000514307 CCDC14Q49A88 953 aa16.76■□□□□ 0.27
NUP54-214ENST00000514307 PM20D1Q6GTS8 502 aa16.76■□□□□ 0.27
NUP54-214ENST00000514307 DDX53Q86TM3 631 aaKnown RBP16.76■□□□□ 0.27
NUP54-214ENST00000514307 MAP7D3Q8IWC1 876 aa16.76■□□□□ 0.27
NUP54-214ENST00000514307 SCN4BQ8IWT1 228 aa16.76■□□□□ 0.27
NUP54-214ENST00000514307 SLC39A11Q8N1S5 342 aa16.76■□□□□ 0.27
NUP54-214ENST00000514307 COLGALT1Q8NBJ5 622 aa16.76■□□□□ 0.27
NUP54-214ENST00000514307 CCDC26Q8TAB7 109 aa16.76■□□□□ 0.27
NUP54-214ENST00000514307 RIN2Q8WYP3 895 aaPredicted RBP16.76■□□□□ 0.27
NUP54-214ENST00000514307 PIK3R5Q8WYR1 880 aa16.76■□□□□ 0.27
NUP54-214ENST00000514307 HERVK_113Q902F9 699 aa16.76■□□□□ 0.27
NUP54-214ENST00000514307 CEP295NLQ96MC4 621 aa16.76■□□□□ 0.27
NUP54-214ENST00000514307 RUNDC3BQ96NL0 473 aa16.76■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms