RNA–Protein interactions for RNA: ENST00000513960.5

VCAN-210, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 3,973 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-210ENST00000513960 SLC25A3Q00325 362 aa10.07□□□□□ -0.8
VCAN-210ENST00000513960 GAD2Q05329 585 aa10.07□□□□□ -0.8
VCAN-210ENST00000513960 NFX1Q12986 1120 aaKnown RBP10.07□□□□□ -0.8
VCAN-210ENST00000513960 TMEM63BQ5T3F8 832 aa10.07□□□□□ -0.8
VCAN-210ENST00000513960 ZCCHC23Q6ZST2 131 aa10.07□□□□□ -0.8
VCAN-210ENST00000513960 CCDC60Q8IWA6 550 aaPredicted RBP10.07□□□□□ -0.8
VCAN-210ENST00000513960 PDIK1LQ8N165 341 aa10.07□□□□□ -0.8
VCAN-210ENST00000513960 KLHL23Q8NBE8 558 aa10.07□□□□□ -0.8
VCAN-210ENST00000513960 RBM15BQ8NDT2 890 aaKnown RBP10.07□□□□□ -0.8
VCAN-210ENST00000513960 GSDMBQ8TAX9 411 aa10.07□□□□□ -0.8
VCAN-210ENST00000513960 CD101Q93033 1021 aa10.07□□□□□ -0.8
VCAN-210ENST00000513960 FAM210AQ96ND0 272 aa10.07□□□□□ -0.8
VCAN-210ENST00000513960 ACAD9Q9H845 621 aa10.07□□□□□ -0.8
VCAN-210ENST00000513960 KRT82Q9NSB4 513 aa10.07□□□□□ -0.8
VCAN-210ENST00000513960 FGFR1P11362 822 aa10.06□□□□□ -0.8
VCAN-210ENST00000513960 ZNF280AP59817 542 aaPredicted RBP10.06□□□□□ -0.8
VCAN-210ENST00000513960 CENPCQ03188 943 aa10.06□□□□□ -0.8
VCAN-210ENST00000513960 CCNG2Q16589 344 aa10.06□□□□□ -0.8
VCAN-210ENST00000513960 IYDQ6PHW0 289 aa10.06□□□□□ -0.8
VCAN-210ENST00000513960 TMEM270Q6UE05 265 aa10.06□□□□□ -0.8
VCAN-210ENST00000513960 RSPH3Q86UC2 560 aa10.06□□□□□ -0.8
VCAN-210ENST00000513960 FBXO27Q8NI29 283 aa10.06□□□□□ -0.8
VCAN-210ENST00000513960 TEX13BQ9BXU2 312 aa10.06□□□□□ -0.8
VCAN-210ENST00000513960 MMADHCQ9H3L0 296 aaPredicted RBP10.06□□□□□ -0.8
VCAN-210ENST00000513960 ATXN10Q9UBB4 475 aa10.06□□□□□ -0.8
VCAN-210ENST00000513960 AGO2Q9UKV8 859 aaKnown RBP10.06□□□□□ -0.8
VCAN-210ENST00000513960 PPM1HQ9ULR3 514 aa10.06□□□□□ -0.8
VCAN-210ENST00000513960 IQANK1A0A1B0GTG1 560 aa10.06□□□□□ -0.8
VCAN-210ENST00000513960 K7ERI5 159 aa10.06□□□□□ -0.8
VCAN-210ENST00000513960 ACOT2P49753 483 aa10.06□□□□□ -0.8
VCAN-210ENST00000513960 GMPSP49915 693 aaPredicted RBP10.06□□□□□ -0.8
VCAN-210ENST00000513960 CHI3L2Q15782 390 aa10.06□□□□□ -0.8
VCAN-210ENST00000513960 RAPH1Q70E73 1250 aa10.06□□□□□ -0.8
VCAN-210ENST00000513960 PSPC1Q8WXF1 523 aaKnown RBP10.06□□□□□ -0.8
VCAN-210ENST00000513960 GCNAQ96QF7 691 aa10.06□□□□□ -0.8
VCAN-210ENST00000513960 ZNF395Q9H8N7 513 aaPredicted RBP10.06□□□□□ -0.8
VCAN-210ENST00000513960 XPNPEP1Q9NQW7 623 aa10.06□□□□□ -0.8
VCAN-210ENST00000513960 APPL1Q9UKG1 709 aa10.06□□□□□ -0.8
VCAN-210ENST00000513960 MAD1L1Q9Y6D9 718 aa10.06□□□□□ -0.8
VCAN-210ENST00000513960 E2F8A0AVK6 867 aa10.06□□□□□ -0.8
VCAN-210ENST00000513960 HLA-DRAP01903 254 aa10.06□□□□□ -0.8
VCAN-210ENST00000513960 VAV1P15498 845 aa10.06□□□□□ -0.8
VCAN-210ENST00000513960 IVDP26440 423 aa10.06□□□□□ -0.8
VCAN-210ENST00000513960 DSG3P32926 999 aa10.06□□□□□ -0.8
VCAN-210ENST00000513960 OAZ1P54368 228 aa10.06□□□□□ -0.8
VCAN-210ENST00000513960 CDC16Q13042 620 aa10.06□□□□□ -0.8
VCAN-210ENST00000513960 BMPR2Q13873 1038 aa10.06□□□□□ -0.8
VCAN-210ENST00000513960 UBAP2LQ14157 1087 aaKnown RBP10.06□□□□□ -0.8
VCAN-210ENST00000513960 TCHHL1Q5QJ38 904 aaPredicted RBP10.06□□□□□ -0.8
VCAN-210ENST00000513960 MFSD7Q6UXD7 560 aa10.06□□□□□ -0.8
VCAN-210ENST00000513960 LCA5Q86VQ0 697 aa10.06□□□□□ -0.8
VCAN-210ENST00000513960 ZNF677Q86XU0 584 aa10.06□□□□□ -0.8
VCAN-210ENST00000513960 CRLF3Q8IUI8 442 aa10.06□□□□□ -0.8
VCAN-210ENST00000513960 NUDCD3Q8IVD9 361 aa10.06□□□□□ -0.8
VCAN-210ENST00000513960 AGR3Q8TD06 166 aa10.06□□□□□ -0.8
VCAN-210ENST00000513960 PPP2R3CQ969Q6 453 aa10.06□□□□□ -0.8
VCAN-210ENST00000513960 TMEM143Q96AN5 459 aa10.06□□□□□ -0.8
VCAN-210ENST00000513960 FAM136AQ96C01 138 aa10.06□□□□□ -0.8
VCAN-210ENST00000513960 DNAAF2Q9NVR5 837 aaKnown RBP10.06□□□□□ -0.8
VCAN-210ENST00000513960 UMODL1Q5DID0 1318 aa10.05□□□□□ -0.8
VCAN-210ENST00000513960 F5H423 210 aaPredicted RBP10.05□□□□□ -0.8
VCAN-210ENST00000513960 ATP6V1G1O75348 118 aa10.05□□□□□ -0.8
VCAN-210ENST00000513960 SLC1A1P43005 524 aa10.05□□□□□ -0.8
VCAN-210ENST00000513960 PDE1CQ14123 709 aaPredicted RBP10.05□□□□□ -0.8
VCAN-210ENST00000513960 EMC2Q15006 297 aa10.05□□□□□ -0.8
VCAN-210ENST00000513960 R3HDM1Q15032 1099 aaKnown RBP10.05□□□□□ -0.8
VCAN-210ENST00000513960 KLHL38Q2WGJ6 581 aa10.05□□□□□ -0.8
VCAN-210ENST00000513960 PRAMEF18Q5VWM3 479 aa10.05□□□□□ -0.8
VCAN-210ENST00000513960 SPOPLQ6IQ16 392 aa10.05□□□□□ -0.8
VCAN-210ENST00000513960 ULK2Q8IYT8 1036 aa10.05□□□□□ -0.8
VCAN-210ENST00000513960 RNF168Q8IYW5 571 aaPredicted RBP10.05□□□□□ -0.8
VCAN-210ENST00000513960 MCOLN2Q8IZK6 566 aa10.05□□□□□ -0.8
VCAN-210ENST00000513960 C12orf50Q8NA57 414 aaPredicted RBP10.05□□□□□ -0.8
VCAN-210ENST00000513960 ICA1LQ8NDH6 482 aa10.05□□□□□ -0.8
VCAN-210ENST00000513960 SLC7A3Q8WY07 619 aa10.05□□□□□ -0.8
VCAN-210ENST00000513960 DDX1Q92499 740 aaKnown RBP10.05□□□□□ -0.8
VCAN-210ENST00000513960 ANLNQ9NQW6 1124 aa10.05□□□□□ -0.8
VCAN-210ENST00000513960 LNPEPQ9UIQ6 1025 aa10.05□□□□□ -0.8
VCAN-210ENST00000513960 PRPF4O43172 522 aaKnown RBP eCLIP10.05□□□□□ -0.8
VCAN-210ENST00000513960 STAM2O75886 525 aa10.05□□□□□ -0.8
VCAN-210ENST00000513960 PTPRAP18433 802 aa10.05□□□□□ -0.8
VCAN-210ENST00000513960 PSMD6Q15008 389 aa10.05□□□□□ -0.8
VCAN-210ENST00000513960 CYTH1Q15438 398 aa10.05□□□□□ -0.8
VCAN-210ENST00000513960 SLFN12LQ6IEE8 588 aa10.05□□□□□ -0.8
VCAN-210ENST00000513960 SLC16A10Q8TF71 515 aa10.05□□□□□ -0.8
VCAN-210ENST00000513960 CNBD2Q96M20 576 aa10.05□□□□□ -0.8
VCAN-210ENST00000513960 GRIP2Q9C0E4 1043 aa10.05□□□□□ -0.8
VCAN-210ENST00000513960 MIS12Q9H081 205 aa10.05□□□□□ -0.8
VCAN-210ENST00000513960 ZNF302Q9NR11 478 aa10.05□□□□□ -0.8
VCAN-210ENST00000513960 ARHGAP28Q9P2N2 729 aa10.05□□□□□ -0.8
VCAN-210ENST00000513960 NUMBLQ9Y6R0 609 aa10.05□□□□□ -0.8
VCAN-210ENST00000513960 NFASCO94856 1347 aa10.05□□□□□ -0.8
VCAN-210ENST00000513960 TRIM49D1C9J1S8 452 aa10.05□□□□□ -0.8
VCAN-210ENST00000513960 C19orf81C9J6K1 198 aa10.05□□□□□ -0.8
VCAN-210ENST00000513960 CFLARO15519 480 aa10.05□□□□□ -0.8
VCAN-210ENST00000513960 RNASEH1O60930 286 aaKnown RBP10.05□□□□□ -0.8
VCAN-210ENST00000513960 SUPT20HL2P0C7V6 817 aa10.05□□□□□ -0.8
VCAN-210ENST00000513960 SPATA31D3P0C874 917 aa10.05□□□□□ -0.8
VCAN-210ENST00000513960 CDK7P50613 346 aa10.05□□□□□ -0.8
VCAN-210ENST00000513960 FAAP100Q0VG06 881 aa10.05□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms