RNA–Protein interactions for RNA: ENST00000513818.1

TOPBP1-209, Transcript of DNA topoisomerase II binding protein 1, humanhuman

TSL 1 (best)

Gene TOPBP1, Length 898 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOPBP1-209ENST00000513818 PIGZQ86VD9 579 aa10.36□□□□□ -0.75
TOPBP1-209ENST00000513818 C1orf131Q8NDD1 294 aaKnown RBP10.36□□□□□ -0.75
TOPBP1-209ENST00000513818 SHKBP1Q8TBC3 707 aa10.36□□□□□ -0.75
TOPBP1-209ENST00000513818 EPS8L1Q8TE68 723 aa10.36□□□□□ -0.75
TOPBP1-209ENST00000513818 ZNF606Q8WXB4 792 aa10.36□□□□□ -0.75
TOPBP1-209ENST00000513818 C8orf48Q96LL4 319 aa10.36□□□□□ -0.75
TOPBP1-209ENST00000513818 RIPOR3Q96MK2 946 aa10.36□□□□□ -0.75
TOPBP1-209ENST00000513818 NECAB3Q96P71 396 aaPredicted RBP10.36□□□□□ -0.75
TOPBP1-209ENST00000513818 MYADMQ96S97 322 aa10.36□□□□□ -0.75
TOPBP1-209ENST00000513818 DUSP16Q9BY84 665 aa10.36□□□□□ -0.75
TOPBP1-209ENST00000513818 DNAI2Q9GZS0 605 aa10.36□□□□□ -0.75
TOPBP1-209ENST00000513818 FAM124BQ9H5Z6 455 aaPredicted RBP10.36□□□□□ -0.75
TOPBP1-209ENST00000513818 IL21Q9HBE4 155 aa10.36□□□□□ -0.75
TOPBP1-209ENST00000513818 CSNK1G1Q9HCP0 422 aa10.36□□□□□ -0.75
TOPBP1-209ENST00000513818 WDR6Q9NNW5 1121 aaKnown RBP10.36□□□□□ -0.75
TOPBP1-209ENST00000513818 HSFX1Q9UBD0 423 aa10.36□□□□□ -0.75
TOPBP1-209ENST00000513818 HESX1Q9UBX0 185 aa10.36□□□□□ -0.75
TOPBP1-209ENST00000513818 MAFFQ9ULX9 164 aa10.36□□□□□ -0.75
TOPBP1-209ENST00000513818 MRPS23Q9Y3D9 190 aaKnown RBP10.36□□□□□ -0.75
TOPBP1-209ENST00000513818 ITIH6Q6UXX5 1313 aa10.35□□□□□ -0.75
TOPBP1-209ENST00000513818 TNFRSF10BO14763 440 aa10.35□□□□□ -0.75
TOPBP1-209ENST00000513818 PAPLNO95428 1278 aa10.35□□□□□ -0.75
TOPBP1-209ENST00000513818 MMEP08473 750 aa10.35□□□□□ -0.75
TOPBP1-209ENST00000513818 POU2F2P09086 479 aa10.35□□□□□ -0.75
TOPBP1-209ENST00000513818 CSH1P0DML2 217 aa10.35□□□□□ -0.75
TOPBP1-209ENST00000513818 CSH2P0DML3 217 aa10.35□□□□□ -0.75
TOPBP1-209ENST00000513818 PTPN2P17706 415 aa10.35□□□□□ -0.75
TOPBP1-209ENST00000513818 PGFP49763 221 aa10.35□□□□□ -0.75
TOPBP1-209ENST00000513818 PTK2Q05397 1052 aa10.35□□□□□ -0.75
TOPBP1-209ENST00000513818 ADIGQ0VDE8 80 aa10.35□□□□□ -0.75
TOPBP1-209ENST00000513818 BST2Q10589 180 aaKnown RBP10.35□□□□□ -0.75
TOPBP1-209ENST00000513818 ASIC2Q16515 512 aa10.35□□□□□ -0.75
TOPBP1-209ENST00000513818 PKDCCQ504Y2 493 aa10.35□□□□□ -0.75
TOPBP1-209ENST00000513818 PRSS36Q5K4E3 855 aa10.35□□□□□ -0.75
TOPBP1-209ENST00000513818 IER5LQ5T953 404 aa10.35□□□□□ -0.75
TOPBP1-209ENST00000513818 LCLAT1Q6UWP7 414 aa10.35□□□□□ -0.75
TOPBP1-209ENST00000513818 ITIH5Q86UX2 942 aa10.35□□□□□ -0.75
TOPBP1-209ENST00000513818 VSTM4Q8IW00 320 aa10.35□□□□□ -0.75
TOPBP1-209ENST00000513818 PHF6Q8IWS0 365 aaKnown RBP eCLIP10.35□□□□□ -0.75
TOPBP1-209ENST00000513818 ANKRD52Q8NB46 1076 aa10.35□□□□□ -0.75
TOPBP1-209ENST00000513818 NDRG1Q92597 394 aaKnown RBP10.35□□□□□ -0.75
TOPBP1-209ENST00000513818 RPGRIP1Q96KN7 1286 aa10.35□□□□□ -0.75
TOPBP1-209ENST00000513818 ANP32EQ9BTT0 268 aa10.35□□□□□ -0.75
TOPBP1-209ENST00000513818 ATXN3LQ9H3M9 355 aa10.35□□□□□ -0.75
TOPBP1-209ENST00000513818 GMIPQ9P107 970 aa10.35□□□□□ -0.75
TOPBP1-209ENST00000513818 TJP2Q9UDY2 1190 aa10.35□□□□□ -0.75
TOPBP1-209ENST00000513818 CYTH4Q9UIA0 394 aa10.35□□□□□ -0.75
TOPBP1-209ENST00000513818 NOCTQ9UK39 431 aaKnown RBP10.35□□□□□ -0.75
TOPBP1-209ENST00000513818 DOCK8Q8NF50 2099 aa10.34□□□□□ -0.75
TOPBP1-209ENST00000513818 C2CD4DB7Z1M9 353 aa10.34□□□□□ -0.75
TOPBP1-209ENST00000513818 XPO1O14980 1071 aaKnown RBP10.34□□□□□ -0.75
TOPBP1-209ENST00000513818 ABL1P00519 1130 aa10.34□□□□□ -0.75
TOPBP1-209ENST00000513818 SETSIPP0DME0 302 aa10.34□□□□□ -0.75
TOPBP1-209ENST00000513818 SKILP12757 684 aa10.34□□□□□ -0.75
TOPBP1-209ENST00000513818 LCP1P13796 627 aa10.34□□□□□ -0.75
TOPBP1-209ENST00000513818 CHRNB2P17787 502 aa10.34□□□□□ -0.75
TOPBP1-209ENST00000513818 CASP14P31944 242 aa10.34□□□□□ -0.75
TOPBP1-209ENST00000513818 GBP2P32456 591 aaPredicted RBP10.34□□□□□ -0.75
TOPBP1-209ENST00000513818 EPHA5P54756 1037 aa10.34□□□□□ -0.75
TOPBP1-209ENST00000513818 MRPS5P82675 430 aaKnown RBP10.34□□□□□ -0.75
TOPBP1-209ENST00000513818 TAF10Q12962 218 aa10.34□□□□□ -0.75
TOPBP1-209ENST00000513818 SMAD2Q15796 467 aaKnown RBP10.34□□□□□ -0.75
TOPBP1-209ENST00000513818 CNGA2Q16280 664 aa10.34□□□□□ -0.75
TOPBP1-209ENST00000513818 CYP4A22Q5TCH4 519 aa10.34□□□□□ -0.75
TOPBP1-209ENST00000513818 SPECC1LQ69YQ0 1117 aa10.34□□□□□ -0.75
TOPBP1-209ENST00000513818 PMF1Q6P1K2 205 aa10.34□□□□□ -0.75
TOPBP1-209ENST00000513818 GAREM2Q75VX8 874 aa10.34□□□□□ -0.75
TOPBP1-209ENST00000513818 RTL10Q7L3V2 364 aa10.34□□□□□ -0.75
TOPBP1-209ENST00000513818 TMEM150AQ86TG1 271 aa10.34□□□□□ -0.75
TOPBP1-209ENST00000513818 NPAS3Q8IXF0 933 aa10.34□□□□□ -0.75
TOPBP1-209ENST00000513818 NUP93Q8N1F7 819 aa10.34□□□□□ -0.75
TOPBP1-209ENST00000513818 CLEC4CQ8WTT0 213 aa10.34□□□□□ -0.75
TOPBP1-209ENST00000513818 DDX1Q92499 740 aaKnown RBP10.34□□□□□ -0.75
TOPBP1-209ENST00000513818 FBXO32Q969P5 355 aa10.34□□□□□ -0.75
TOPBP1-209ENST00000513818 MCRS1Q96EZ8 462 aa10.34□□□□□ -0.75
TOPBP1-209ENST00000513818 SPATA17Q96L03 361 aa10.34□□□□□ -0.75
TOPBP1-209ENST00000513818 ASB2Q96Q27 587 aa10.34□□□□□ -0.75
TOPBP1-209ENST00000513818 ULBP1Q9BZM6 244 aa10.34□□□□□ -0.75
TOPBP1-209ENST00000513818 MIS12Q9H081 205 aa10.34□□□□□ -0.75
TOPBP1-209ENST00000513818 SMG9Q9H0W8 520 aaKnown RBP10.34□□□□□ -0.75
TOPBP1-209ENST00000513818 PDCL3Q9H2J4 239 aa10.34□□□□□ -0.75
TOPBP1-209ENST00000513818 SLITRK6Q9H5Y7 841 aa10.34□□□□□ -0.75
TOPBP1-209ENST00000513818 TRPC7Q9HCX4 862 aa10.34□□□□□ -0.75
TOPBP1-209ENST00000513818 ST7Q9NRC1 585 aa10.34□□□□□ -0.75
TOPBP1-209ENST00000513818 SEPT11Q9NVA2 429 aaKnown RBP10.34□□□□□ -0.75
TOPBP1-209ENST00000513818 KIAA1257Q9ULG3 409 aa10.34□□□□□ -0.75
TOPBP1-209ENST00000513818 ASB3Q9Y575 518 aa10.34□□□□□ -0.75
TOPBP1-209ENST00000513818 NCANO14594 1321 aa10.33□□□□□ -0.76
TOPBP1-209ENST00000513818 DENND4CQ5VZ89 1909 aa10.33□□□□□ -0.76
TOPBP1-209ENST00000513818 ANAPC1Q9H1A4 1944 aa10.33□□□□□ -0.76
TOPBP1-209ENST00000513818 MED7O43513 233 aa10.33□□□□□ -0.76
TOPBP1-209ENST00000513818 F11P03951 625 aa10.33□□□□□ -0.76
TOPBP1-209ENST00000513818 PLEKP08567 350 aaPredicted RBP10.33□□□□□ -0.76
TOPBP1-209ENST00000513818 USP17L7P0C7H9 530 aa10.33□□□□□ -0.76
TOPBP1-209ENST00000513818 FERP16591 822 aa10.33□□□□□ -0.76
TOPBP1-209ENST00000513818 YWHAQP27348 245 aa10.33□□□□□ -0.76
TOPBP1-209ENST00000513818 KRT9P35527 623 aa10.33□□□□□ -0.76
TOPBP1-209ENST00000513818 GPD2P43304 727 aa10.33□□□□□ -0.76
TOPBP1-209ENST00000513818 PLA2G4AP47712 749 aa10.33□□□□□ -0.76
TOPBP1-209ENST00000513818 FMO1Q01740 532 aa10.33□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms