RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 ABRAQ8N0Z2 381 aa3.64□□□□□ -1.83
NUP54-208ENST00000508604 MAP4K1Q92918 833 aa3.64□□□□□ -1.83
NUP54-208ENST00000508604 MTFMTQ96DP5 389 aaKnown RBP3.64□□□□□ -1.83
NUP54-208ENST00000508604 RSPRY1Q96DX4 576 aa3.64□□□□□ -1.83
NUP54-208ENST00000508604 MTMR8Q96EF0 704 aa3.64□□□□□ -1.83
NUP54-208ENST00000508604 TRMOQ9BU70 441 aa3.64□□□□□ -1.83
NUP54-208ENST00000508604 TMEM184CQ9NVA4 438 aa3.64□□□□□ -1.83
NUP54-208ENST00000508604 XPR1Q9UBH6 696 aa3.64□□□□□ -1.83
NUP54-208ENST00000508604 EME2A4GXA9 379 aaPredicted RBP3.63□□□□□ -1.83
NUP54-208ENST00000508604 GABRDO14764 452 aa3.63□□□□□ -1.83
NUP54-208ENST00000508604 SMAD6O43541 496 aaKnown RBP3.63□□□□□ -1.83
NUP54-208ENST00000508604 TLR2O60603 784 aa3.63□□□□□ -1.83
NUP54-208ENST00000508604 HDCP19113 662 aa3.63□□□□□ -1.83
NUP54-208ENST00000508604 ADORA2AP29274 412 aa3.63□□□□□ -1.83
NUP54-208ENST00000508604 GUCY2FP51841 1108 aa3.63□□□□□ -1.83
NUP54-208ENST00000508604 PRKAG1P54619 331 aa3.63□□□□□ -1.83
NUP54-208ENST00000508604 HYAL1Q12794 435 aa3.63□□□□□ -1.83
NUP54-208ENST00000508604 PTPN21Q16825 1174 aa3.63□□□□□ -1.83
NUP54-208ENST00000508604 KHDC1LQ5JSQ8 128 aa3.63□□□□□ -1.83
NUP54-208ENST00000508604 ADHFE1Q8IWW8 467 aa3.63□□□□□ -1.83
NUP54-208ENST00000508604 SUGP2Q8IX01 1082 aaKnown RBP eCLIP3.63□□□□□ -1.832e-11■■□□□ 11.8
NUP54-208ENST00000508604 GADD45GIP1Q8TAE8 222 aaPredicted RBP3.63□□□□□ -1.83
NUP54-208ENST00000508604 MPLKIPQ8TAP9 179 aa3.63□□□□□ -1.83
NUP54-208ENST00000508604 ZNF398Q8TD17 642 aa3.63□□□□□ -1.83
NUP54-208ENST00000508604 HS6ST2Q96MM7 605 aa3.63□□□□□ -1.83
NUP54-208ENST00000508604 PRR25Q96S07 402 aa3.63□□□□□ -1.83
NUP54-208ENST00000508604 SNX15Q9NRS6 342 aa3.63□□□□□ -1.83
NUP54-208ENST00000508604 ZSCAN32Q9NX65 697 aa3.63□□□□□ -1.83
NUP54-208ENST00000508604 HEY2Q9UBP5 337 aa3.63□□□□□ -1.83
NUP54-208ENST00000508604 ATP8A1Q9Y2Q0 1164 aa3.63□□□□□ -1.83
NUP54-208ENST00000508604 CDC25AP30304 524 aa3.62□□□□□ -1.83
NUP54-208ENST00000508604 MAP2K6P52564 334 aa3.62□□□□□ -1.83
NUP54-208ENST00000508604 COPB1P53618 953 aaKnown RBP3.62□□□□□ -1.83
NUP54-208ENST00000508604 SRSF1Q07955 248 aaKnown RBP eCLIP3.62□□□□□ -1.83
NUP54-208ENST00000508604 MLC1Q15049 377 aa3.62□□□□□ -1.83
NUP54-208ENST00000508604 CYP1B1Q16678 543 aa3.62□□□□□ -1.83
NUP54-208ENST00000508604 VSTM1Q6UX27 236 aa3.62□□□□□ -1.83
NUP54-208ENST00000508604 USP45Q70EL2 814 aa3.62□□□□□ -1.83
NUP54-208ENST00000508604 SLC35A4Q96G79 324 aa3.62□□□□□ -1.83
NUP54-208ENST00000508604 ZFYVE19Q96K21 471 aa3.62□□□□□ -1.83
NUP54-208ENST00000508604 CTAGE1Q96RT6 745 aa3.62□□□□□ -1.83
NUP54-208ENST00000508604 SLC13A1Q9BZW2 595 aa3.62□□□□□ -1.83
NUP54-208ENST00000508604 CXorf36Q9H7Y0 433 aa3.62□□□□□ -1.83
NUP54-208ENST00000508604 ASIC5Q9NY37 505 aa3.62□□□□□ -1.83
NUP54-208ENST00000508604 TTC3P53804 2025 aa3.62□□□□□ -1.83
NUP54-208ENST00000508604 LACTBL1A8MY62 500 aa3.62□□□□□ -1.83
NUP54-208ENST00000508604 THP07101 528 aa3.62□□□□□ -1.83
NUP54-208ENST00000508604 CSF1RP07333 972 aa3.62□□□□□ -1.83
NUP54-208ENST00000508604 GKP32189 559 aa3.62□□□□□ -1.83
NUP54-208ENST00000508604 WNT3P56703 355 aa3.62□□□□□ -1.83
NUP54-208ENST00000508604 PLS1Q14651 629 aa3.62□□□□□ -1.83
NUP54-208ENST00000508604 KRTAP27-1Q3LI81 207 aa3.62□□□□□ -1.83
NUP54-208ENST00000508604 ZNF549Q6P9A3 640 aa3.62□□□□□ -1.83
NUP54-208ENST00000508604 DPY19L3Q6ZPD9 716 aa3.62□□□□□ -1.83
NUP54-208ENST00000508604 LIX1LQ8IVB5 337 aa3.62□□□□□ -1.83
NUP54-208ENST00000508604 KRT78Q8N1N4 520 aa3.62□□□□□ -1.83
NUP54-208ENST00000508604 ZBTB8BQ8NAP8 495 aaPredicted RBP3.62□□□□□ -1.83
NUP54-208ENST00000508604 ZNF548Q8NEK5 533 aaPredicted RBP3.62□□□□□ -1.83
NUP54-208ENST00000508604 TXLNGQ9NUQ3 528 aa3.62□□□□□ -1.83
NUP54-208ENST00000508604 ICKQ9UPZ9 632 aa3.62□□□□□ -1.83
NUP54-208ENST00000508604 KRT86O43790 486 aa3.61□□□□□ -1.83
NUP54-208ENST00000508604 TOMM40O96008 361 aa3.61□□□□□ -1.83
NUP54-208ENST00000508604 MT3P25713 68 aa3.61□□□□□ -1.83
NUP54-208ENST00000508604 DGKEP52429 567 aa3.61□□□□□ -1.83
NUP54-208ENST00000508604 MTMR1Q13613 665 aa3.61□□□□□ -1.83
NUP54-208ENST00000508604 KRT81Q14533 505 aa3.61□□□□□ -1.83
NUP54-208ENST00000508604 ODF1Q14990 250 aa3.61□□□□□ -1.83
NUP54-208ENST00000508604 LY6KQ17RY6 165 aa3.61□□□□□ -1.83
NUP54-208ENST00000508604 PGS1Q32NB8 556 aa3.61□□□□□ -1.83
NUP54-208ENST00000508604 SLC9C1Q4G0N8 1177 aa3.61□□□□□ -1.83
NUP54-208ENST00000508604 CC2D1BQ5T0F9 858 aaKnown RBP3.61□□□□□ -1.83
NUP54-208ENST00000508604 UBAP2Q5T6F2 1119 aaKnown RBP3.61□□□□□ -1.83
NUP54-208ENST00000508604 KRTAP5-4Q6L8H1 288 aa3.61□□□□□ -1.83
NUP54-208ENST00000508604 Q6ZTC4 211 aa3.61□□□□□ -1.83
NUP54-208ENST00000508604 PTCHD4Q6ZW05 846 aa3.61□□□□□ -1.83
NUP54-208ENST00000508604 PIP4P1Q86T03 277 aa3.61□□□□□ -1.83
NUP54-208ENST00000508604 PNISRQ8TF01 805 aaKnown RBP3.61□□□□□ -1.83
NUP54-208ENST00000508604 PCDHA6Q9UN73 950 aa3.61□□□□□ -1.83
NUP54-208ENST00000508604 M0R3H8 397 aa3.6□□□□□ -1.83
NUP54-208ENST00000508604 PMPCBO75439 489 aa3.6□□□□□ -1.83
NUP54-208ENST00000508604 VNN1O95497 513 aa3.6□□□□□ -1.83
NUP54-208ENST00000508604 CTSAP10619 480 aa3.6□□□□□ -1.83
NUP54-208ENST00000508604 PRKAR1BP31321 381 aa3.6□□□□□ -1.83
NUP54-208ENST00000508604 RECQLP46063 649 aaPredicted RBP3.6□□□□□ -1.83
NUP54-208ENST00000508604 UCP3P55916 312 aa3.6□□□□□ -1.83
NUP54-208ENST00000508604 LARS2Q15031 903 aaKnown RBP3.6□□□□□ -1.83
NUP54-208ENST00000508604 TMTC4Q5T4D3 741 aa3.6□□□□□ -1.83
NUP54-208ENST00000508604 RANBP10Q6VN20 620 aa3.6□□□□□ -1.83
NUP54-208ENST00000508604 DCDC5Q6ZRR9 648 aa3.6□□□□□ -1.83
NUP54-208ENST00000508604 C18orf65Q6ZTR6 163 aa3.6□□□□□ -1.83
NUP54-208ENST00000508604 SPARTQ8N0X7 666 aa3.6□□□□□ -1.83
NUP54-208ENST00000508604 PRR18Q8N4B5 295 aa3.6□□□□□ -1.83
NUP54-208ENST00000508604 NGDNQ8NEJ9 315 aaKnown RBP3.6□□□□□ -1.83
NUP54-208ENST00000508604 CDK5RAP3Q96JB5 506 aa3.6□□□□□ -1.83
NUP54-208ENST00000508604 C17orf80Q9BSJ5 609 aa3.6□□□□□ -1.83
NUP54-208ENST00000508604 CCDC8Q9H0W5 538 aaPredicted RBP3.6□□□□□ -1.83
NUP54-208ENST00000508604 USP22Q9UPT9 525 aa3.6□□□□□ -1.83
NUP54-208ENST00000508604 SNX14Q9Y5W7 946 aa3.6□□□□□ -1.83
NUP54-208ENST00000508604 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP3.6□□□□□ -1.83
NUP54-208ENST00000508604 CNOT3O75175 753 aaKnown RBP3.59□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms