RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 TMEM184CQ9NVA4 438 aa4.97□□□□□ -1.61
VPS50-219ENST00000495039 PROCRQ9UNN8 238 aa4.97□□□□□ -1.61
VPS50-219ENST00000495039 ATP8A1Q9Y2Q0 1164 aa4.97□□□□□ -1.61
VPS50-219ENST00000495039 HS3ST3B1Q9Y662 390 aa4.97□□□□□ -1.61
VPS50-219ENST00000495039 PRSS44E7EML9 344 aa4.96□□□□□ -1.62
VPS50-219ENST00000495039 H3BUI4 141 aa4.96□□□□□ -1.62
VPS50-219ENST00000495039 CNOT3O75175 753 aaKnown RBP4.96□□□□□ -1.62
VPS50-219ENST00000495039 TULP3O75386 442 aa4.96□□□□□ -1.62
VPS50-219ENST00000495039 ZRANB2O95218 330 aaKnown RBP eCLIP4.96□□□□□ -1.62
VPS50-219ENST00000495039 MT-CO3P00414 261 aa4.96□□□□□ -1.62
VPS50-219ENST00000495039 T-ENOLP0DO92 83 aa4.96□□□□□ -1.62
VPS50-219ENST00000495039 SUMO2P61956 95 aaKnown RBP4.96□□□□□ -1.62
VPS50-219ENST00000495039 PLS1Q14651 629 aa4.96□□□□□ -1.62
VPS50-219ENST00000495039 DAB2IPQ5VWQ8 1189 aa4.96□□□□□ -1.62
VPS50-219ENST00000495039 USP45Q70EL2 814 aa4.96□□□□□ -1.62
VPS50-219ENST00000495039 PRR18Q8N4B5 295 aa4.96□□□□□ -1.62
VPS50-219ENST00000495039 RBMXL3Q8N7X1 1067 aaKnown RBP4.96□□□□□ -1.62
VPS50-219ENST00000495039 CTAGE1Q96RT6 745 aa4.96□□□□□ -1.62
VPS50-219ENST00000495039 CCDC8Q9H0W5 538 aaPredicted RBP4.96□□□□□ -1.62
VPS50-219ENST00000495039 PSMD9O00233 223 aa4.95□□□□□ -1.62
VPS50-219ENST00000495039 VNN1O95497 513 aa4.95□□□□□ -1.62
VPS50-219ENST00000495039 XRCC6P12956 609 aaKnown RBP eCLIP4.95□□□□□ -1.62
VPS50-219ENST00000495039 THBS4P35443 961 aa4.95□□□□□ -1.62
VPS50-219ENST00000495039 GUCY2FP51841 1108 aa4.95□□□□□ -1.62
VPS50-219ENST00000495039 PSG6Q00889 435 aa4.95□□□□□ -1.62
VPS50-219ENST00000495039 KRT17Q04695 432 aa4.95□□□□□ -1.62
VPS50-219ENST00000495039 PTPN21Q16825 1174 aa4.95□□□□□ -1.62
VPS50-219ENST00000495039 LY6KQ17RY6 165 aa4.95□□□□□ -1.62
VPS50-219ENST00000495039 MGAT5BQ3V5L5 792 aa4.95□□□□□ -1.62
VPS50-219ENST00000495039 CCDC157Q569K6 752 aa4.95□□□□□ -1.62
VPS50-219ENST00000495039 TMEM63BQ5T3F8 832 aa4.95□□□□□ -1.62
VPS50-219ENST00000495039 UBAP2Q5T6F2 1119 aaKnown RBP4.95□□□□□ -1.62
VPS50-219ENST00000495039 COLCA1Q6ZS62 124 aa4.95□□□□□ -1.62
VPS50-219ENST00000495039 LIX1LQ8IVB5 337 aa4.95□□□□□ -1.62
VPS50-219ENST00000495039 ZNF548Q8NEK5 533 aaPredicted RBP4.95□□□□□ -1.62
VPS50-219ENST00000495039 SLC35A4Q96G79 324 aa4.95□□□□□ -1.62
VPS50-219ENST00000495039 TRMOQ9BU70 441 aa4.95□□□□□ -1.62
VPS50-219ENST00000495039 SARS2Q9NP81 518 aaKnown RBP4.95□□□□□ -1.62
VPS50-219ENST00000495039 TMX2Q9Y320 296 aa4.95□□□□□ -1.62
VPS50-219ENST00000495039 SNX14Q9Y5W7 946 aa4.95□□□□□ -1.62
VPS50-219ENST00000495039 MYO1CO00159 1063 aa4.94□□□□□ -1.62
VPS50-219ENST00000495039 CES2O00748 559 aa4.94□□□□□ -1.62
VPS50-219ENST00000495039 CCND1P24385 295 aa4.94□□□□□ -1.62
VPS50-219ENST00000495039 DGKEP52429 567 aa4.94□□□□□ -1.62
VPS50-219ENST00000495039 WNT3P56703 355 aa4.94□□□□□ -1.62
VPS50-219ENST00000495039 RPS13P62277 151 aaKnown RBP4.94□□□□□ -1.62
VPS50-219ENST00000495039 NKX6-1P78426 367 aaPredicted RBP4.94□□□□□ -1.62
VPS50-219ENST00000495039 CFHR1Q03591 330 aa4.94□□□□□ -1.62
VPS50-219ENST00000495039 LARS2Q15031 903 aaKnown RBP4.94□□□□□ -1.62
VPS50-219ENST00000495039 KHDC1LQ5JSQ8 128 aa4.94□□□□□ -1.62
VPS50-219ENST00000495039 TMTC4Q5T4D3 741 aa4.94□□□□□ -1.62
VPS50-219ENST00000495039 TMEM65Q6PI78 240 aa4.94□□□□□ -1.62
VPS50-219ENST00000495039 ZNF280BQ86YH2 543 aa4.94□□□□□ -1.62
VPS50-219ENST00000495039 ADHFE1Q8IWW8 467 aa4.94□□□□□ -1.62
VPS50-219ENST00000495039 SUGP2Q8IX01 1082 aaKnown RBP eCLIP4.94□□□□□ -1.62
VPS50-219ENST00000495039 ZFYVE19Q96K21 471 aa4.94□□□□□ -1.62
VPS50-219ENST00000495039 MESP1Q9BRJ9 268 aa4.94□□□□□ -1.62
VPS50-219ENST00000495039 SHROOM4Q9ULL8 1493 aa4.94□□□□□ -1.62
VPS50-219ENST00000495039 EME2A4GXA9 379 aaPredicted RBP4.93□□□□□ -1.62
VPS50-219ENST00000495039 CYSRT1A8MQ03 144 aa4.93□□□□□ -1.62
VPS50-219ENST00000495039 GTPBP1O00178 669 aaKnown RBP4.93□□□□□ -1.62
VPS50-219ENST00000495039 KRT86O43790 486 aa4.93□□□□□ -1.62
VPS50-219ENST00000495039 MT3P25713 68 aa4.93□□□□□ -1.62
VPS50-219ENST00000495039 GKP32189 559 aa4.93□□□□□ -1.62
VPS50-219ENST00000495039 CDKN2AP42771 156 aaKnown RBP4.93□□□□□ -1.62
VPS50-219ENST00000495039 UCP3P55916 312 aa4.93□□□□□ -1.62
VPS50-219ENST00000495039 HYAL1Q12794 435 aa4.93□□□□□ -1.62
VPS50-219ENST00000495039 KRT81Q14533 505 aa4.93□□□□□ -1.62
VPS50-219ENST00000495039 MLC1Q15049 377 aa4.93□□□□□ -1.62
VPS50-219ENST00000495039 AWAT1Q58HT5 328 aa4.93□□□□□ -1.62
VPS50-219ENST00000495039 DENND2CQ68D51 928 aa4.93□□□□□ -1.62
VPS50-219ENST00000495039 Q6ZTC4 211 aa4.93□□□□□ -1.62
VPS50-219ENST00000495039 MPLKIPQ8TAP9 179 aa4.93□□□□□ -1.62
VPS50-219ENST00000495039 MTFMTQ96DP5 389 aaKnown RBP4.93□□□□□ -1.62
VPS50-219ENST00000495039 MAFFQ9ULX9 164 aa4.93□□□□□ -1.62
VPS50-219ENST00000495039 PCDHA6Q9UN73 950 aa4.93□□□□□ -1.62
VPS50-219ENST00000495039 CADPSQ9ULU8 1353 aa4.92□□□□□ -1.62
VPS50-219ENST00000495039 M0R3H8 397 aa4.92□□□□□ -1.62
VPS50-219ENST00000495039 PMPCBO75439 489 aa4.92□□□□□ -1.62
VPS50-219ENST00000495039 TGFB3P10600 412 aa4.92□□□□□ -1.62
VPS50-219ENST00000495039 CTSAP10619 480 aa4.92□□□□□ -1.62
VPS50-219ENST00000495039 KCNA3P22001 575 aa4.92□□□□□ -1.62
VPS50-219ENST00000495039 COPB1P53618 953 aaKnown RBP4.92□□□□□ -1.62
VPS50-219ENST00000495039 PRKAG1P54619 331 aa4.92□□□□□ -1.62
VPS50-219ENST00000495039 LMAN2Q12907 356 aa4.92□□□□□ -1.62
VPS50-219ENST00000495039 PGS1Q32NB8 556 aa4.92□□□□□ -1.62
VPS50-219ENST00000495039 ZIK1Q3SY52 487 aaPredicted RBP4.92□□□□□ -1.62
VPS50-219ENST00000495039 ZNF549Q6P9A3 640 aa4.92□□□□□ -1.62
VPS50-219ENST00000495039 C18orf65Q6ZTR6 163 aa4.92□□□□□ -1.62
VPS50-219ENST00000495039 PTCHD4Q6ZW05 846 aa4.92□□□□□ -1.62
VPS50-219ENST00000495039 RAB11FIP4Q86YS3 637 aa4.92□□□□□ -1.62
VPS50-219ENST00000495039 C17orf80Q9BSJ5 609 aa4.92□□□□□ -1.62
VPS50-219ENST00000495039 SNX15Q9NRS6 342 aa4.92□□□□□ -1.62
VPS50-219ENST00000495039 KATNA1O75449 491 aa4.91□□□□□ -1.62
VPS50-219ENST00000495039 THP07101 528 aa4.91□□□□□ -1.62
VPS50-219ENST00000495039 APEHP13798 732 aaKnown RBP4.91□□□□□ -1.62
VPS50-219ENST00000495039 SLC11A2P49281 568 aa4.91□□□□□ -1.62
VPS50-219ENST00000495039 SEC23BQ15437 767 aa4.91□□□□□ -1.62
VPS50-219ENST00000495039 CDK5RAP3Q96JB5 506 aa4.91□□□□□ -1.62
VPS50-219ENST00000495039 CNNM1Q9NRU3 951 aa4.91□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms