RNA–Protein interactions for RNA: ENST00000494518.1

SKA1-205, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2

Gene SKA1, Length 746 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-205ENST00000494518 SURF1Q15526 300 aa13.48□□□□□ -0.25
SKA1-205ENST00000494518 ELF2Q15723 593 aa13.48□□□□□ -0.25
SKA1-205ENST00000494518 SNRNP35Q16560 246 aaKnown RBP13.48□□□□□ -0.25
SKA1-205ENST00000494518 ST3GAL2Q16842 350 aa13.48□□□□□ -0.25
SKA1-205ENST00000494518 GAB4Q2WGN9 574 aa13.48□□□□□ -0.25
SKA1-205ENST00000494518 FAM26FQ5R3K3 315 aa13.48□□□□□ -0.25
SKA1-205ENST00000494518 RNF43Q68DV7 783 aa13.48□□□□□ -0.25
SKA1-205ENST00000494518 ANO7Q6IWH7 933 aa13.48□□□□□ -0.25
SKA1-205ENST00000494518 DPH6Q7L8W6 267 aa13.48□□□□□ -0.25
SKA1-205ENST00000494518 LINC00301Q8NCQ3 95 aa13.48□□□□□ -0.25
SKA1-205ENST00000494518 USP33Q8TEY7 942 aa13.48□□□□□ -0.25
SKA1-205ENST00000494518 ZC3H10Q96K80 434 aaKnown RBP13.48□□□□□ -0.25
SKA1-205ENST00000494518 FNBP1Q96RU3 617 aa13.48□□□□□ -0.25
SKA1-205ENST00000494518 CGRRF1Q99675 332 aa13.48□□□□□ -0.25
SKA1-205ENST00000494518 ZNF518BQ9C0D4 1074 aa13.48□□□□□ -0.25
SKA1-205ENST00000494518 RNF38Q9H0F5 515 aa13.48□□□□□ -0.25
SKA1-205ENST00000494518 BLZF1Q9H2G9 400 aa13.48□□□□□ -0.25
SKA1-205ENST00000494518 VPS45Q9NRW7 570 aa13.48□□□□□ -0.25
SKA1-205ENST00000494518 AGPAT3Q9NRZ7 376 aa13.48□□□□□ -0.25
SKA1-205ENST00000494518 KBTBD4Q9NVX7 518 aa13.48□□□□□ -0.25
SKA1-205ENST00000494518 NXF1Q9UBU9 619 aaKnown RBP13.48□□□□□ -0.25
SKA1-205ENST00000494518 CIZ1Q9ULV3 898 aaPredicted RBP13.48□□□□□ -0.25
SKA1-205ENST00000494518 TNRC6BQ9UPQ9 1833 aaKnown RBP13.48□□□□□ -0.25
SKA1-205ENST00000494518 ZFHX4Q86UP3 3567 aa13.47□□□□□ -0.25
SKA1-205ENST00000494518 CACNA1EQ15878 2313 aa13.47□□□□□ -0.25
SKA1-205ENST00000494518 ZNF840PA6NDX5 716 aa13.47□□□□□ -0.25
SKA1-205ENST00000494518 K7EQS6 105 aa13.47□□□□□ -0.25
SKA1-205ENST00000494518 TRIM66O15016 1216 aa13.47□□□□□ -0.25
SKA1-205ENST00000494518 BCKDHBP21953 392 aa13.47□□□□□ -0.25
SKA1-205ENST00000494518 CASP4P49662 377 aa13.47□□□□□ -0.25
SKA1-205ENST00000494518 LIMK1P53667 647 aa13.47□□□□□ -0.25
SKA1-205ENST00000494518 TNNC1P63316 161 aa13.47□□□□□ -0.25
SKA1-205ENST00000494518 KDSRQ06136 332 aa13.47□□□□□ -0.25
SKA1-205ENST00000494518 CYP24A1Q07973 514 aa13.47□□□□□ -0.25
SKA1-205ENST00000494518 TAF10Q12962 218 aa13.47□□□□□ -0.25
SKA1-205ENST00000494518 MAPRE1Q15691 268 aaKnown RBP13.47□□□□□ -0.25
SKA1-205ENST00000494518 WDR72Q3MJ13 1102 aa13.47□□□□□ -0.25
SKA1-205ENST00000494518 SCARA5Q6ZMJ2 495 aa13.47□□□□□ -0.25
SKA1-205ENST00000494518 EPM2AIP1Q7L775 607 aaPredicted RBP13.47□□□□□ -0.25
SKA1-205ENST00000494518 C12orf40Q86WS4 652 aa13.47□□□□□ -0.25
SKA1-205ENST00000494518 EDEM2Q9BV94 578 aa13.47□□□□□ -0.25
SKA1-205ENST00000494518 TTLL2Q9BWV7 592 aa13.47□□□□□ -0.25
SKA1-205ENST00000494518 ZSCAN16Q9H4T2 348 aaPredicted RBP13.47□□□□□ -0.25
SKA1-205ENST00000494518 CFAP97Q9P2B7 532 aa13.47□□□□□ -0.25
SKA1-205ENST00000494518 PCDHGA5Q9Y5G8 931 aa13.47□□□□□ -0.25
SKA1-205ENST00000494518 A8MXQ7 604 aa13.46□□□□□ -0.25
SKA1-205ENST00000494518 TM4SF5O14894 197 aa13.46□□□□□ -0.25
SKA1-205ENST00000494518 EIF3DO15371 548 aaKnown RBP eCLIP13.46□□□□□ -0.25
SKA1-205ENST00000494518 RHOBTB1O94844 696 aa13.46□□□□□ -0.25
SKA1-205ENST00000494518 CAVIN2O95810 425 aa13.46□□□□□ -0.25
SKA1-205ENST00000494518 MBL2P11226 248 aaPredicted RBP13.46□□□□□ -0.25
SKA1-205ENST00000494518 HNRNPLP14866 589 aaKnown RBP eCLIP13.46□□□□□ -0.25
SKA1-205ENST00000494518 TCF3P15923 654 aa13.46□□□□□ -0.25
SKA1-205ENST00000494518 PTPN1P18031 435 aaKnown RBP13.46□□□□□ -0.25
SKA1-205ENST00000494518 PDE6CP51160 858 aa13.46□□□□□ -0.25
SKA1-205ENST00000494518 MYL6P60660 151 aa13.46□□□□□ -0.25
SKA1-205ENST00000494518 TRPC3Q13507 836 aa13.46□□□□□ -0.25
SKA1-205ENST00000494518 PSMD6Q15008 389 aa13.46□□□□□ -0.25
SKA1-205ENST00000494518 SHC4Q6S5L8 630 aa13.46□□□□□ -0.25
SKA1-205ENST00000494518 ALLCQ8N6M5 410 aa13.46□□□□□ -0.25
SKA1-205ENST00000494518 XXYLT1Q8NBI6 393 aa13.46□□□□□ -0.25
SKA1-205ENST00000494518 ZNF507Q8TCN5 953 aa13.46□□□□□ -0.25
SKA1-205ENST00000494518 SCFD1Q8WVM8 642 aa13.46□□□□□ -0.25
SKA1-205ENST00000494518 DDX1Q92499 740 aaKnown RBP13.46□□□□□ -0.25
SKA1-205ENST00000494518 ZNF516Q92618 1163 aa13.46□□□□□ -0.25
SKA1-205ENST00000494518 C8orf48Q96LL4 319 aa13.46□□□□□ -0.25
SKA1-205ENST00000494518 B3GNT5Q9BYG0 378 aa13.46□□□□□ -0.25
SKA1-205ENST00000494518 GZF1Q9H116 711 aaPredicted RBP13.46□□□□□ -0.25
SKA1-205ENST00000494518 SMYD3Q9H7B4 428 aa13.46□□□□□ -0.25
SKA1-205ENST00000494518 KIAA1586Q9HCI6 787 aa13.46□□□□□ -0.25
SKA1-205ENST00000494518 SLC39A2Q9NP94 309 aa13.46□□□□□ -0.25
SKA1-205ENST00000494518 MORC2Q9Y6X9 1032 aaPredicted RBP13.46□□□□□ -0.25
SKA1-205ENST00000494518 CACNA1GO43497 2377 aa13.46□□□□□ -0.25
SKA1-205ENST00000494518 PLXND1Q9Y4D7 1925 aa13.45□□□□□ -0.26
SKA1-205ENST00000494518 BCLAF3A2AJT9 711 aaKnown RBP13.45□□□□□ -0.26
SKA1-205ENST00000494518 C4orf47A7E2U8 309 aa13.45□□□□□ -0.26
SKA1-205ENST00000494518 PATE3B3GLJ2 98 aa13.45□□□□□ -0.26
SKA1-205ENST00000494518 GIPC1O14908 333 aa13.45□□□□□ -0.26
SKA1-205ENST00000494518 POLR2DO15514 142 aaKnown RBP13.45□□□□□ -0.26
SKA1-205ENST00000494518 PHACTR2O75167 634 aa13.45□□□□□ -0.26
SKA1-205ENST00000494518 TACC1O75410 805 aa13.45□□□□□ -0.26
SKA1-205ENST00000494518 KLF8O95600 359 aaPredicted RBP13.45□□□□□ -0.26
SKA1-205ENST00000494518 TIE1P35590 1138 aa13.45□□□□□ -0.26
SKA1-205ENST00000494518 CDH8P55286 799 aa13.45□□□□□ -0.26
SKA1-205ENST00000494518 NOP14P78316 857 aaKnown RBP13.45□□□□□ -0.26
SKA1-205ENST00000494518 SLC7A9P82251 487 aa13.45□□□□□ -0.26
SKA1-205ENST00000494518 AMPD3Q01432 767 aa13.45□□□□□ -0.26
SKA1-205ENST00000494518 ORC1Q13415 861 aa13.45□□□□□ -0.26
SKA1-205ENST00000494518 DHCR24Q15392 516 aa13.45□□□□□ -0.26
SKA1-205ENST00000494518 USP39Q53GS9 565 aaKnown RBP13.45□□□□□ -0.26
SKA1-205ENST00000494518 EMC10Q5UCC4 262 aa13.45□□□□□ -0.26
SKA1-205ENST00000494518 TDRD10Q5VZ19 366 aaKnown RBP13.45□□□□□ -0.26
SKA1-205ENST00000494518 PSAPL1Q6NUJ1 521 aa13.45□□□□□ -0.26
SKA1-205ENST00000494518 TMEM92Q6UXU6 159 aa13.45□□□□□ -0.26
SKA1-205ENST00000494518 ARMCX6Q7L4S7 300 aa13.45□□□□□ -0.26
SKA1-205ENST00000494518 GRAMD1CQ8IYS0 662 aa13.45□□□□□ -0.26
SKA1-205ENST00000494518 B3GALNT2Q8NCR0 500 aa13.45□□□□□ -0.26
SKA1-205ENST00000494518 MDGA1Q8NFP4 955 aa13.45□□□□□ -0.26
SKA1-205ENST00000494518 PLEKHO2Q8TD55 490 aa13.45□□□□□ -0.26
SKA1-205ENST00000494518 RLN3Q8WXF3 142 aa13.45□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms