RNA–Protein interactions for RNA: ENST00000494123.5

BRCA1-223, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-223ENST00000494123 IMPACTQ9P2X3 320 aa15.36■□□□□ 0.05
BRCA1-223ENST00000494123 DNMT3BQ9UBC3 853 aaKnown RBP15.36■□□□□ 0.05
BRCA1-223ENST00000494123 UXTQ9UBK9 157 aaPredicted RBP15.36■□□□□ 0.05
BRCA1-223ENST00000494123 REV3LO60673 3130 aa15.36■□□□□ 0.05
BRCA1-223ENST00000494123 GREB1Q4ZG55 1949 aa15.36■□□□□ 0.05
BRCA1-223ENST00000494123 HHLA1C9JL84 531 aa15.35■□□□□ 0.05
BRCA1-223ENST00000494123 PAPLNO95428 1278 aa15.35■□□□□ 0.05
BRCA1-223ENST00000494123 MYL4P12829 197 aa15.35■□□□□ 0.05
BRCA1-223ENST00000494123 CHRNB2P17787 502 aa15.35■□□□□ 0.05
BRCA1-223ENST00000494123 TNFAIP3P21580 790 aa15.35■□□□□ 0.05
BRCA1-223ENST00000494123 YWHAQP27348 245 aa15.35■□□□□ 0.05
BRCA1-223ENST00000494123 MTHFRP42898 656 aa15.35■□□□□ 0.05
BRCA1-223ENST00000494123 FMO1Q01740 532 aa15.35■□□□□ 0.05
BRCA1-223ENST00000494123 GPRIN1Q7Z2K8 1008 aa15.35■□□□□ 0.05
BRCA1-223ENST00000494123 HS6ST3Q8IZP7 471 aa15.35■□□□□ 0.05
BRCA1-223ENST00000494123 SIX6OS1Q8N1H7 587 aa15.35■□□□□ 0.05
BRCA1-223ENST00000494123 LEMD2Q8NC56 503 aa15.35■□□□□ 0.05
BRCA1-223ENST00000494123 SCAMP5Q8TAC9 235 aa15.35■□□□□ 0.05
BRCA1-223ENST00000494123 FBXO44Q9H4M3 255 aa15.35■□□□□ 0.05
BRCA1-223ENST00000494123 MYO16Q9Y6X6 1858 aa15.35■□□□□ 0.05
BRCA1-223ENST00000494123 TNFRSF10BO14763 440 aa15.35■□□□□ 0.05
BRCA1-223ENST00000494123 FGF19O95750 216 aa15.35■□□□□ 0.05
BRCA1-223ENST00000494123 RHOP08100 348 aa15.35■□□□□ 0.05
BRCA1-223ENST00000494123 HMGA1P17096 107 aaKnown RBP15.35■□□□□ 0.05
BRCA1-223ENST00000494123 HNRNPH3P31942 346 aaKnown RBP15.35■□□□□ 0.05
BRCA1-223ENST00000494123 TKTL1P51854 596 aa15.35■□□□□ 0.05
BRCA1-223ENST00000494123 SNX16P57768 344 aa15.35■□□□□ 0.05
BRCA1-223ENST00000494123 USP46P62068 366 aa15.35■□□□□ 0.05
BRCA1-223ENST00000494123 ARID5BQ14865 1188 aa15.35■□□□□ 0.05
BRCA1-223ENST00000494123 PMF1Q6P1K2 205 aa15.35■□□□□ 0.05
BRCA1-223ENST00000494123 ZNF571Q7Z3V5 609 aaPredicted RBP15.35■□□□□ 0.05
BRCA1-223ENST00000494123 MSANTD4Q8NCY6 345 aa15.35■□□□□ 0.05
BRCA1-223ENST00000494123 FEZF2Q8TBJ5 459 aa15.35■□□□□ 0.05
BRCA1-223ENST00000494123 KCTD13Q8WZ19 329 aa15.35■□□□□ 0.05
BRCA1-223ENST00000494123 TRMT2BQ96GJ1 504 aaKnown RBP15.35■□□□□ 0.05
BRCA1-223ENST00000494123 HSFY1Q96LI6 401 aa15.35■□□□□ 0.05
BRCA1-223ENST00000494123 SLITRK1Q96PX8 696 aa15.35■□□□□ 0.05
BRCA1-223ENST00000494123 GCNAQ96QF7 691 aa15.35■□□□□ 0.05
BRCA1-223ENST00000494123 SYNCQ9H7C4 482 aa15.35■□□□□ 0.05
BRCA1-223ENST00000494123 COMMD8Q9NX08 183 aa15.35■□□□□ 0.05
BRCA1-223ENST00000494123 PIK3R2O00459 728 aa15.34■□□□□ 0.05
BRCA1-223ENST00000494123 ZNF197O14709 1029 aa15.34■□□□□ 0.05
BRCA1-223ENST00000494123 LCP1P13796 627 aa15.34■□□□□ 0.05
BRCA1-223ENST00000494123 ACADSBP45954 432 aa15.34■□□□□ 0.05
BRCA1-223ENST00000494123 KIF11P52732 1056 aa15.34■□□□□ 0.05
BRCA1-223ENST00000494123 NTHL1P78549 312 aa15.34■□□□□ 0.05
BRCA1-223ENST00000494123 ADIGQ0VDE8 80 aa15.34■□□□□ 0.05
BRCA1-223ENST00000494123 PDCLQ13371 301 aa15.34■□□□□ 0.05
BRCA1-223ENST00000494123 SMAD4Q13485 552 aaKnown RBP15.34■□□□□ 0.05
BRCA1-223ENST00000494123 NAA35Q5VZE5 725 aa15.34■□□□□ 0.05
BRCA1-223ENST00000494123 HGSNATQ68CP4 663 aa15.34■□□□□ 0.05
BRCA1-223ENST00000494123 TC2NQ8N9U0 490 aa15.34■□□□□ 0.05
BRCA1-223ENST00000494123 IPO4Q8TEX9 1081 aaKnown RBP15.34■□□□□ 0.05
BRCA1-223ENST00000494123 STK32AQ8WU08 396 aa15.34■□□□□ 0.05
BRCA1-223ENST00000494123 FBXO32Q969P5 355 aa15.34■□□□□ 0.05
BRCA1-223ENST00000494123 PPP1R13BQ96KQ4 1090 aa15.34■□□□□ 0.05
BRCA1-223ENST00000494123 MYRFLQ96LU7 910 aa15.34■□□□□ 0.05
BRCA1-223ENST00000494123 NECTIN4Q96NY8 510 aa15.34■□□□□ 0.05
BRCA1-223ENST00000494123 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP15.34■□□□□ 0.05
BRCA1-223ENST00000494123 ZNF334Q9HCZ1 680 aaPredicted RBP15.34■□□□□ 0.05
BRCA1-223ENST00000494123 CYTH4Q9UIA0 394 aa15.34■□□□□ 0.05
BRCA1-223ENST00000494123 CDH22Q9UJ99 828 aa15.34■□□□□ 0.05
BRCA1-223ENST00000494123 USP15Q9Y4E8 981 aaPredicted RBP15.34■□□□□ 0.05
BRCA1-223ENST00000494123 ZNF638Q14966 1978 aaKnown RBP15.34■□□□□ 0.05
BRCA1-223ENST00000494123 CLUHO75153 1309 aa15.33■□□□□ 0.05
BRCA1-223ENST00000494123 FAM170AA1A519 330 aa15.33■□□□□ 0.04
BRCA1-223ENST00000494123 CYP1A1P04798 512 aaPredicted RBP15.33■□□□□ 0.04
BRCA1-223ENST00000494123 GABRR2P28476 465 aa15.33■□□□□ 0.04
BRCA1-223ENST00000494123 CDC25CP30307 473 aa15.33■□□□□ 0.04
BRCA1-223ENST00000494123 CDH5P33151 784 aaPredicted RBP15.33■□□□□ 0.04
BRCA1-223ENST00000494123 NSFP46459 744 aaKnown RBP15.33■□□□□ 0.04
BRCA1-223ENST00000494123 EPHA5P54756 1037 aa15.33■□□□□ 0.04
BRCA1-223ENST00000494123 NOMO3P69849 1222 aa15.33■□□□□ 0.04
BRCA1-223ENST00000494123 TAF10Q12962 218 aa15.33■□□□□ 0.04
BRCA1-223ENST00000494123 LEXMQ3ZCV2 418 aa15.33■□□□□ 0.04
BRCA1-223ENST00000494123 RAB41Q5JT25 222 aa15.33■□□□□ 0.04
BRCA1-223ENST00000494123 TMC8Q8IU68 726 aa15.33■□□□□ 0.04
BRCA1-223ENST00000494123 WDTC1Q8N5D0 677 aa15.33■□□□□ 0.04
BRCA1-223ENST00000494123 PDZD8Q8NEN9 1154 aa15.33■□□□□ 0.04
BRCA1-223ENST00000494123 CPA5Q8WXQ8 436 aa15.33■□□□□ 0.04
BRCA1-223ENST00000494123 TTLL2Q9BWV7 592 aa15.33■□□□□ 0.04
BRCA1-223ENST00000494123 ATXN3LQ9H3M9 355 aa15.33■□□□□ 0.04
BRCA1-223ENST00000494123 DEF6Q9H4E7 631 aa15.33■□□□□ 0.04
BRCA1-223ENST00000494123 WDR6Q9NNW5 1121 aaKnown RBP15.33■□□□□ 0.04
BRCA1-223ENST00000494123 CYLDQ9NQC7 956 aa15.33■□□□□ 0.04
BRCA1-223ENST00000494123 PRDM6Q9NQX0 595 aa15.33■□□□□ 0.04
BRCA1-223ENST00000494123 MRPS23Q9Y3D9 190 aaKnown RBP15.33■□□□□ 0.04
BRCA1-223ENST00000494123 MBTPS2O43462 519 aa15.32■□□□□ 0.04
BRCA1-223ENST00000494123 PLEKP08567 350 aaPredicted RBP15.32■□□□□ 0.04
BRCA1-223ENST00000494123 USP17L7P0C7H9 530 aa15.32■□□□□ 0.04
BRCA1-223ENST00000494123 FSHRP23945 695 aa15.32■□□□□ 0.04
BRCA1-223ENST00000494123 CBX2Q14781 532 aaPredicted RBP15.32■□□□□ 0.04
BRCA1-223ENST00000494123 CLEC16AQ2KHT3 1053 aa15.32■□□□□ 0.04
BRCA1-223ENST00000494123 WDR59Q6PJI9 974 aa15.32■□□□□ 0.04
BRCA1-223ENST00000494123 ERICH1Q86X53 443 aa15.32■□□□□ 0.04
BRCA1-223ENST00000494123 PANX2Q96RD6 677 aa15.32■□□□□ 0.04
BRCA1-223ENST00000494123 CPXM1Q96SM3 734 aa15.32■□□□□ 0.04
BRCA1-223ENST00000494123 PCDHB18PQ96TA0 734 aa15.32■□□□□ 0.04
BRCA1-223ENST00000494123 SYT11Q9BT88 431 aa15.32■□□□□ 0.04
BRCA1-223ENST00000494123 SLC4A5Q9BY07 1137 aa15.32■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms